Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

1668855 .. 1670713

Gene Structure 1859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCAAAATCATTGGGGAACTTTTCCACAATTCGTCAGATTACTGAAATATATCACCCACTGTCTTTGAGACACTTCTTGTTAAGTGCGCACTATAGATCTCCACTCAATTACAGTGAATCCCAGCTGGATAGTGCATCAGCTGCTGTCTATTACATATATCAGACTTTGCAAGAGTGTGAAGATGCTTTATCTCCATTTCAAGAAGAGGTCCAGAAGGAAGGCACAGAACCAAATGGTAGAACAGTTAAAATTCCTCAAGCTGCCCAAGTGAAGCTACGGAATGAGTTTAAGACAAAAATGTCTGATGACTTGAACACAGCACCCATATTGACTGGTGCTTTGCAAGATGCCTTGAGGTCTATAAACAGTTTTGTGCCTGATCTTAAGAAGAAGCAGCAGAAGCAAAAACAATCATCCGTAATCCAGGCCCTAGTTGAAACAACAAGAGAAGTTAGAAGAGTTCTGGGCATTTCGGGTCTGCTATCCTCCGATACATACTCTGAGGTTTTGCAGCAATTGAAAAAGAAAGCTTTGAACAGGGCAAGACTTACTGAAGAGGACGTGCTGCGTGCGATTGAAGAAAGAACAACAGCAAGACAAAAAAAAGAATATGCAAGGAGTGATCAGATCAGAGAAGAAATGGAGAGAAAGGGAATTGCAATCATGGCTGTGGGCAAGGGGAGTATTTGGAGACCTTGTGTCCCGAAAGAACAAAAACAAAAAACACCGCCAAACGAGGAAGAACAGAAGGCATCACCTGTTGAACAAAAAGAGCTGCCTGTGTCGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

264

Amino Acids

30.01

Weight (kDa)

9.15

Isoelectric Point (pI)

69.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	1 - 46	9e-11	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
Acc16I	TGCGCA	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	788
AciI	CCGC	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	576
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	7 cut(s)	203, 316, 440, 523, 538, 581, 767
AhdI	GACNNNNNGTC	1 cut(s)	701
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	6 cut(s)	127, 143, 263, 277, 533, 778
AluI	AGCT	6 cut(s)	127, 143, 263, 277, 533, 778
Alw26I	GTCTC	2 cut(s)	64, 688
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	6 cut(s)	143, 263, 397, 514, 568, 778
ApoI	RAATTY	1 cut(s)	252
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	211, 430
AsuHPI	GGTGA	2 cut(s)	47, 750
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	6 cut(s)	130, 250, 409, 526, 555, 765
BciT130I	CCWGG	1 cut(s)	428
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	64, 688
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	6 cut(s)	144, 264, 398, 515, 569, 779
BlsI	GCNGC	6 cut(s)	145, 265, 399, 516, 570, 780
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	211
BmeRI	GACNNNNNGTC	1 cut(s)	701
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	211, 430
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	4 cut(s)	146, 175, 340, 764
BpuEI	CTTGAG	2 cut(s)	243, 376
BsaI	GGTCTC	1 cut(s)	688
BsaXI	ACNNNNNCTCC	2 cut(s)	685, 715
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	416
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	6 cut(s)	130, 250, 409, 526, 555, 765
BseYI	CCCAGC	1 cut(s)	123
BshFI	GGCC	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	689
BsmAI	GTCTC	2 cut(s)	64, 688
BsmFI	GGGAC	1 cut(s)	689
BsnI	GGCC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	688
Bsp143I	GATC	4 cut(s)	98, 382, 625, 630
BspACI	CCGC	1 cut(s)	731
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	1 cut(s)	496
BspTI	CTTAAG	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	4 cut(s)	98, 382, 625, 630
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	4 cut(s)	63, 116, 247, 371
Bst6I	CTCTTC	3 cut(s)	201, 454, 552
BstAFI	CTTAAG	1 cut(s)	386
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	4 cut(s)	101, 385, 628, 633
BstMAI	GTCTC	2 cut(s)	64, 688
BstMBI	GATC	4 cut(s)	98, 382, 625, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 403, 668
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	6 cut(s)	130, 250, 409, 526, 555, 765
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	431
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	2 cut(s)	59, 121
Cac8I	GCNNGC	1 cut(s)	573
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	211, 430
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	2 cut(s)	667, 792
CviJI	RGCY	8 cut(s)	127, 143, 263, 277, 431, 533, 671, 778
CviKI_1	RGCY	8 cut(s)	127, 143, 263, 277, 431, 533, 671, 778
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	4 cut(s)	100, 384, 627, 632
DpnII	GATC	4 cut(s)	98, 382, 625, 630
DrdI	GACNNNNNNGTC	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	301
Eam1104I	CTCTTC	3 cut(s)	201, 454, 552
Eam1105I	GACNNNNNGTC	1 cut(s)	701
EarI	CTCTTC	3 cut(s)	201, 454, 552
Eco31I	GGTCTC	1 cut(s)	688
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	426
FaeI	CATG	2 cut(s)	670, 795
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	2 cut(s)	666, 791
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	788
Fnu4HI	GCNGC	6 cut(s)	144, 264, 398, 515, 569, 779
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	6 cut(s)	144, 264, 398, 515, 569, 779
FspAI	RTGCGCAY	1 cut(s)	90
FspBI	CTAG	1 cut(s)	434
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	6 cut(s)	144, 264, 398, 515, 569, 779
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	670, 795
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	789
HindII	GTYRAC	1 cut(s)	789
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	2 cut(s)	47, 750
Hpy166II	GTNNAC	1 cut(s)	789
Hpy188I	TCNGA	7 cut(s)	39, 165, 307, 493, 505, 630, 635
Hpy188III	TCNNGA	3 cut(s)	203, 214, 706
Hpy8I	GTNNAC	1 cut(s)	789
HpyAV	CCTTC	3 cut(s)	211, 215, 745
HpyCH4III	ACNGT	4 cut(s)	63, 116, 247, 371
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	6 cut(s)	137, 172, 346, 514, 617, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 403, 668
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	2 cut(s)	670, 795
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	98, 382, 625, 630
Lsp1109I	GCAGC	6 cut(s)	130, 250, 409, 526, 555, 765
LweI	GCATC	4 cut(s)	146, 175, 340, 764
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	564
MalI	GATC	4 cut(s)	100, 384, 627, 632
MboI	GATC	4 cut(s)	98, 382, 625, 630
MboII	GAAGA	8 cut(s)	194, 218, 403, 471, 569, 593, 650, 755
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	5 cut(s)	30, 109, 252, 518, 657
MnlI	CCTC	7 cut(s)	202, 267, 351, 499, 499, 553, 733
MseI	TTAA	4 cut(s)	83, 249, 291, 387
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	2 cut(s)	127, 143
MspCI	CTTAAG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	143, 403, 668
NdeII	GATC	4 cut(s)	98, 382, 625, 630
NlaIII	CATG	2 cut(s)	670, 795
NsbI	TGCGCA	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	6 cut(s)	145, 265, 399, 516, 570, 780
Psp6I	CCWGG	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	426
PspPI	GGNCC	2 cut(s)	211, 430
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	98
PvuII	CAGCTG	2 cut(s)	127, 143
RseI	CAYNNNNRTG	1 cut(s)	671
SalI	GTCGAC	1 cut(s)	787
SaqAI	TTAA	4 cut(s)	83, 249, 291, 387
SatI	GCNGC	6 cut(s)	144, 264, 398, 515, 569, 779
Sau3AI	GATC	4 cut(s)	98, 382, 625, 630
Sau96I	GGNCC	2 cut(s)	211, 430
ScrFI	CCNGG	1 cut(s)	428
SfaNI	GCATC	4 cut(s)	146, 175, 340, 764
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	3 cut(s)	258, 355, 386
SmoI	CTYRAG	3 cut(s)	258, 355, 386
Sse9I	AATT	5 cut(s)	30, 109, 252, 518, 657
SsiI	CCGC	1 cut(s)	731
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	426
TaaI	ACNGT	4 cut(s)	63, 116, 247, 371
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	788
TasI	AATT	5 cut(s)	30, 109, 252, 518, 657
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	4 cut(s)	83, 249, 291, 387
Tru9I	TTAA	4 cut(s)	83, 249, 291, 387
TscAI	CASTG	2 cut(s)	66, 121
TseI	GCWGC	6 cut(s)	143, 263, 397, 514, 568, 778
TspGWI	ACGGA	2 cut(s)	295, 409
TspRI	CASTG	2 cut(s)	66, 121
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	788
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.