Rh5BG025300

cysteine--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
1785620 .. 1790223
4604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG025300.1

Sequence Viewer

Length: 1224 bp
ATGGTGGAATTTAGGCTTTACAACTCGATGACACACCAGAAGGAGGTCTTCAAGCCCAATGTTCCCGGCGAGGTGGGTATGTACGTTTGCGGCGTCACGCCCTACGCTGAGAGCCACATCGGTCATGCCTGCGCCGCCGTCAATTTTGATGTGCTCTTCAGATACTTAATGGAGTTGGGTTATAAGGTCACGTACGTGCGGAACTTCACTGATGTTGATGACAAGATAATTGATGGAGCAAATAAGAGTGGGGAAGATCCAATGACATTAAGTAATCGTTTTTGCGAAAAATATAAAAATGACATGAAAGATCTCCAATGCCTCGATCCAACCTATCAGCCGCGTGTTTCTGATCACATGGATCAGATAATAGATATGATAACACAGATCGTCGACAATGAATATGCCTACGTAGTTGATGGGGATGTATTCTTTGCTGTTGAGAAATTCCCAAATTATGGGCAATTATCTAGACAAAATTTGGAACATATTAGGGCGGGTGAACGAGTTTATGTTGATTTAAGAAAGCGCAATCCTGCAGATTTTGCATTGTGGAAGTCTGCAAAGCCTGGAGAGCCAGAATGGAAAAGCCCTTGGGGACCAGGAAGGCCGGGGTGGCACATTGAATGCAGTGCCATGAGTGCTCGTTATCTTACATACAAGTTTGATATTCATGGTGGTGGTATTGACTTGATTTTTCCGCATCATGAAAACGAGATCGCTCAAAGTGGTGCTGCATGCCAGGAGGCTTGTGTCAGTTATTGGTTGCACAACGGTCATGTTACTAAGGATAATGAGAAAATGTCAAAATCATTGGGGAACTTTTCCACAATTCGTCAGACTTTGCAAGAGTGTGAAGATGCTTTATCTCCATTTCAAGAAGAGGTCCAGAAGGAAGGCACAGAACCAAATGGTAGAACAGTTAAAATTCCTCAAGCTGCCCAAGTTAAGCTACGGAATGAGTTTAAGACTAAAATGTCTGATGACTTGAACACAGCACCCATATTGACTGGTACTTTGCAAGATGCCTTGAGGTCTATAAACAGTTTTGTGCCTCATCTTAAGAAGAAGCAGCAGAAGCAAAAACAATGTGGGGGTAATCGACGATTTTTGGACTCATCATTATGCCAACTGACCCTTGCCATAAGTACGCGGACAATGGCGGTCATGAATGCGGTGGCAATTACCGTTATTAGTGCCACAATGAAGAAGGCGCGGACGTGA

Protein Analysis

407

Amino Acids

46.13

Weight (kDa)

6.86

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 17 - 286 3.9e-116 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g PF09334 34 - 145 3.7e-06 tRNA synthetases class I (M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AasI GACNNNNNNGTC 1 cut(s) 976
AccB7I CCANNNNNTGG 1 cut(s) 458
AccI GTMKAC 1 cut(s) 393
AccII CGCG 3 cut(s) 343, 1153, 1216
AclWI GGATC 3 cut(s) 251, 320, 369
AcsI RAATTY 4 cut(s) 8, 446, 478, 927
AcuI CTGAAG 1 cut(s) 142
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 4 cut(s) 83, 194, 1015, 1150
AfiI CCNNNNNNNGG 2 cut(s) 43, 458
AflII CTTAAG 1 cut(s) 1061
AgsI TTSAA 4 cut(s) 52, 626, 878, 991
AjiI CACGTC 1 cut(s) 1221
AjnI CCWGG 3 cut(s) 568, 601, 741
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 2 cut(s) 938, 952
AluI AGCT 2 cut(s) 938, 952
Alw21I GWGCWC 2 cut(s) 156, 646
AlwI GGATC 3 cut(s) 251, 320, 369
AoxI GGCC 1 cut(s) 608
ApeKI GCWGC 3 cut(s) 734, 938, 1072
ApoI RAATTY 4 cut(s) 8, 446, 478, 927
ArsI GACNNNNNNTTYG 2 cut(s) 1000, 1032
AspLEI GCGC 3 cut(s) 134, 531, 1216
AspS9I GGNCC 2 cut(s) 599, 886
AsuC2I CCSGG 2 cut(s) 66, 612
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 2 cut(s) 599, 886
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 2 cut(s) 156, 646
BbvI GCAGC 3 cut(s) 721, 925, 1084
BccI CCATC 2 cut(s) 227, 413
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 3 cut(s) 570, 603, 743
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 2 cut(s) 66, 612
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 1061
BglI GCCNNNNNGGC 1 cut(s) 616
BglII AGATCT 1 cut(s) 310
BisI GCNGC 6 cut(s) 91, 135, 341, 735, 939, 1073
BlsI GCNGC 6 cut(s) 92, 136, 342, 736, 940, 1074
Bme1390I CCNGG 5 cut(s) 66, 570, 603, 612, 743
Bme18I GGWCC 2 cut(s) 599, 886
BmgBI CACGTC 1 cut(s) 1221
BmgT120I GGNCC 2 cut(s) 599, 886
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 5 cut(s) 66, 570, 603, 612, 743
BmsI GCATC 3 cut(s) 712, 850, 1015
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 2 cut(s) 918, 1051
BpuMI CCSGG 2 cut(s) 66, 612
BsaAI YACGTR 3 cut(s) 192, 196, 412
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 593, 611
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 458
Bse1I ACTGG 1 cut(s) 1015
BseBI CCWGG 3 cut(s) 570, 603, 743
BseDI CCNNGG 2 cut(s) 593, 611
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 43, 458
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 1015
BseXI GCAGC 3 cut(s) 721, 925, 1084
Bsh1236I CGCG 3 cut(s) 343, 1153, 1216
BshFI GGCC 1 cut(s) 610
BsiHKAI GWGCWC 2 cut(s) 156, 646
BsiSI CCGG 2 cut(s) 66, 611
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 2 cut(s) 43, 458
BsmFI GGGAC 1 cut(s) 612
BsmI GAATGC 2 cut(s) 632, 1177
BsnI GGCC 1 cut(s) 610
Bsp1286I GDGCHC 2 cut(s) 156, 646
Bsp143I GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
BspANI GGCC 1 cut(s) 610
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 3 cut(s) 343, 1153, 1216
BspHI TCATGA 2 cut(s) 706, 1167
BspLI GGNNCC 1 cut(s) 600
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 3 cut(s) 251, 320, 369
BspQI GCTCTTC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 1061
BsrI ACTGG 1 cut(s) 1015
BssECI CCNNGG 2 cut(s) 593, 611
BssMI GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 3 cut(s) 570, 603, 743
Bst4CI ACNGT 4 cut(s) 776, 922, 1046, 1189
Bst6I CTCTTC 2 cut(s) 161, 876
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBAI YACGTR 3 cut(s) 192, 196, 412
BstC8I GCNNGC 2 cut(s) 130, 739
BstDEI CTNAG 2 cut(s) 108, 786
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 3 cut(s) 343, 1153, 1216
BstHHI GCGC 3 cut(s) 134, 531, 1216
BstKTI GATC 7 cut(s) 259, 313, 328, 355, 364, 390, 720
BstMBI GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
BstMWI GCNNNNNNNGC 6 cut(s) 134, 545, 574, 616, 641, 1078
BstNI CCWGG 3 cut(s) 570, 603, 743
BstNSI RCATGY 1 cut(s) 741
BstSCI CCNGG 5 cut(s) 64, 568, 601, 610, 741
BstSFI CTRYAG 1 cut(s) 537
BstSNI TACGTA 1 cut(s) 412
BstUI CGCG 3 cut(s) 343, 1153, 1216
BstV1I GCAGC 3 cut(s) 721, 925, 1084
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 256, 310
BstYI RGATCY 2 cut(s) 256, 310
BsuRI GGCC 1 cut(s) 610
BtrI CACGTC 1 cut(s) 1221
BtsCI GGATG 1 cut(s) 430
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 2 cut(s) 207, 637
Cac8I GCNNGC 2 cut(s) 130, 739
CciI TCATGA 2 cut(s) 706, 1167
CfoI GCGC 3 cut(s) 134, 531, 1216
Cfr13I GGNCC 2 cut(s) 599, 886
CseI GACGC 1 cut(s) 82
Csp6I GTAC 4 cut(s) 82, 193, 1014, 1149
CviAII CATG 9 cut(s) 125, 304, 358, 637, 674, 707, 738, 779, 1168
CviQI GTAC 4 cut(s) 82, 193, 1014, 1149
DdeI CTNAG 2 cut(s) 108, 786
DpnI GATC 7 cut(s) 258, 312, 327, 354, 363, 389, 719
DpnII GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
DrdI GACNNNNNNGTC 1 cut(s) 976
DseDI GACNNNNNNGTC 1 cut(s) 976
Eam1104I CTCTTC 2 cut(s) 161, 876
EarI CTCTTC 2 cut(s) 161, 876
Eco105I TACGTA 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 593
Eco47I GGWCC 2 cut(s) 599, 886
Eco57I CTGAAG 1 cut(s) 142
EcoRII CCWGG 3 cut(s) 568, 601, 741
EcoT14I CCWWGG 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 9 cut(s) 128, 307, 361, 640, 677, 710, 741, 782, 1171
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 612
FatI CATG 9 cut(s) 124, 303, 357, 636, 673, 706, 737, 778, 1167
FauI CCCGC 1 cut(s) 490
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 6 cut(s) 91, 135, 341, 735, 939, 1073
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 6 cut(s) 91, 135, 341, 735, 939, 1073
FspBI CTAG 1 cut(s) 471
GlaI GCGC 3 cut(s) 133, 530, 1215
GluI GCNGC 6 cut(s) 91, 135, 341, 735, 939, 1073
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 1 cut(s) 610
HapII CCGG 2 cut(s) 66, 611
HgaI GACGC 1 cut(s) 82
HhaI GCGC 3 cut(s) 134, 531, 1216
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 9 cut(s) 128, 307, 361, 640, 677, 710, 741, 782, 1171
Hin6I GCGC 3 cut(s) 132, 529, 1214
HinP1I GCGC 3 cut(s) 132, 529, 1214
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 1115
HpaII CCGG 2 cut(s) 66, 611
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 394, 503
Hpy188I TCNGA 5 cut(s) 161, 352, 366, 840, 982
Hpy188III TCNNGA 5 cut(s) 471, 707, 878, 889, 1168
Hpy8I GTNNAC 2 cut(s) 394, 503
Hpy99I CGWCG 2 cut(s) 395, 1107
HpyAV CCTTC 5 cut(s) 34, 600, 886, 890, 1204
HpyCH4III ACNGT 4 cut(s) 776, 922, 1046, 1189
HpyCH4IV ACGT 5 cut(s) 84, 191, 195, 411, 1220
HpyCH4V TGCA 8 cut(s) 539, 548, 563, 630, 737, 769, 847, 1021
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 545, 574, 616, 641, 1078
HpyF3I CTNAG 2 cut(s) 108, 786
HpySE526I ACGT 5 cut(s) 84, 191, 195, 411, 1220
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 9 cut(s) 128, 307, 361, 640, 677, 710, 741, 782, 1171
HspAI GCGC 3 cut(s) 132, 529, 1214
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 3 cut(s) 721, 925, 1084
LweI GCATC 3 cut(s) 712, 850, 1015
MaeI CTAG 1 cut(s) 471
MaeII ACGT 5 cut(s) 84, 191, 195, 411, 1220
MaeIII GTNAC 3 cut(s) 94, 187, 781
MalI GATC 7 cut(s) 258, 312, 327, 354, 363, 389, 719
MboI GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
MboII GAAGA 7 cut(s) 40, 148, 266, 869, 893, 1078, 1219
MflI RGATCY 2 cut(s) 256, 310
MhlI GDGCHC 2 cut(s) 156, 646
MlyI GAGTC 1 cut(s) 1109
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 8 cut(s) 37, 64, 332, 739, 877, 942, 1026, 1065
MseI TTAA 7 cut(s) 167, 269, 521, 924, 948, 966, 1062
MslI CAYNNNNRTG 3 cut(s) 194, 678, 1123
MspCI CTTAAG 1 cut(s) 1061
MspI CCGG 2 cut(s) 66, 611
MspR9I CCNGG 5 cut(s) 66, 570, 603, 612, 743
Mva1269I GAATGC 2 cut(s) 632, 1177
MvaI CCWGG 3 cut(s) 570, 603, 743
MvnI CGCG 3 cut(s) 343, 1153, 1216
MwoI GCNNNNNNNGC 6 cut(s) 134, 545, 574, 616, 641, 1078
NciI CCSGG 2 cut(s) 66, 612
NdeII GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
NlaIII CATG 9 cut(s) 128, 307, 361, 640, 677, 710, 741, 782, 1171
NlaIV GGNNCC 1 cut(s) 600
NmuCI GTSAC 2 cut(s) 94, 187
NspI RCATGY 1 cut(s) 741
OliI CACNNNNGTG 1 cut(s) 194
PaeI GCATGC 1 cut(s) 741
PagI TCATGA 2 cut(s) 706, 1167
PciSI GCTCTTC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 2 cut(s) 632, 1177
Pfl23II CGTACG 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 6 cut(s) 92, 136, 342, 736, 940, 1074
PleI GAGTC 1 cut(s) 1109
PpsI GAGTC 1 cut(s) 1109
Ppu21I YACGTR 3 cut(s) 192, 196, 412
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 568, 601, 741
PspGI CCWGG 3 cut(s) 568, 601, 741
PspLI CGTACG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 2 cut(s) 599, 886
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 2 cut(s) 256, 310
RsaI GTAC 4 cut(s) 83, 194, 1015, 1150
RsaNI GTAC 4 cut(s) 82, 193, 1014, 1149
RseI CAYNNNNRTG 3 cut(s) 194, 678, 1123
SalI GTCGAC 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 7 cut(s) 167, 269, 521, 924, 948, 966, 1062
SatI GCNGC 6 cut(s) 91, 135, 341, 735, 939, 1073
Sau3AI GATC 7 cut(s) 256, 310, 325, 352, 361, 387, 717
Sau96I GGNCC 2 cut(s) 599, 886
SchI GAGTC 1 cut(s) 1109
ScrFI CCNGG 5 cut(s) 66, 570, 603, 612, 743
SduI GDGCHC 2 cut(s) 156, 646
SfaNI GCATC 3 cut(s) 712, 850, 1015
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 2 cut(s) 599, 886
SmiMI CAYNNNNRTG 3 cut(s) 194, 678, 1123
SmlI CTYRAG 3 cut(s) 933, 1030, 1061
SmoI CTYRAG 3 cut(s) 933, 1030, 1061
SnaBI TACGTA 1 cut(s) 412
SphI GCATGC 1 cut(s) 741
SspMI CTAG 1 cut(s) 471
StyD4I CCNGG 5 cut(s) 64, 568, 601, 610, 741
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 4 cut(s) 776, 922, 1046, 1189
TaiI ACGT 5 cut(s) 87, 194, 198, 414, 1223
TaqI TCGA 4 cut(s) 26, 324, 393, 1102
TaqII GACCGA 1 cut(s) 110
TauI GCSGC 3 cut(s) 93, 137, 343
Tru1I TTAA 7 cut(s) 167, 269, 521, 924, 948, 966, 1062
Tru9I TTAA 7 cut(s) 167, 269, 521, 924, 948, 966, 1062
TscAI CASTG 2 cut(s) 214, 637
TseFI GTSAC 2 cut(s) 94, 187
TseI GCWGC 3 cut(s) 734, 938, 1072
Tsp45I GTSAC 2 cut(s) 94, 187
TspDTI ATGAA 6 cut(s) 320, 414, 662, 723, 1184, 1220
TspGWI ACGGA 1 cut(s) 970
TspRI CASTG 2 cut(s) 214, 637
Van91I CCANNNNNTGG 1 cut(s) 458
Vha464I CTTAAG 1 cut(s) 1061
VpaK11BI GGWCC 2 cut(s) 599, 886
XapI RAATTY 4 cut(s) 8, 446, 478, 927
XbaI TCTAGA 1 cut(s) 470
XceI RCATGY 1 cut(s) 741
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.