Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Reverse (-)

1664217 .. 1672148

Gene Structure 7932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031061

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGTGGAATTTAGGCTTTACAACTCGATGACGCACCAGAAGGAGGTCTTCAAGCCCAACGTTCCCGACGAGGTGGGTATGTACGTCTGCGGCGTCACGCCCTACACTAAGAGCCACATTGGTCATGCCCGCGCCGCCGTCAATTTTGATGTGCTCTTCAGATACTTAATGGAGTTGGGTTATAAGGTCACGTACGTGCGGAACTTCACCGATGTTGATGACAAGATAATTGATGGAGCAAATAAGAGTGGGGAAGATCCAATGACATTAAGTAATCGTTTTTGCGAAAAATATAAAAATGACATGAAAGATCTCCAATGCCTCGATCCAACCTATCAGCCGCGTGTTTCTGATCACATGGATCAGACAATAGATGTGATAACACAGATCGTCGACAATGAATATGCCTACGTAGTTGATGGGGATGTATTCTTTGCTGTTGAGAAATTCCCAAATTATGGCCAATTATCTGGACAAAACTTGGAACATATTAGGGCGGGTGAACGAGTTGATGTTGATTTAAGAAAGCGCAATCCTGCAGATTTTGCATTATATATGGAAGTCTGCAAAGCCTGGAGAGCCAGAATGCTAAACAGAGGCAACAACCTGATACATAATTTAGCGTTACTATTGCAAATAAATTTTATGTACATATCTCATATCTGGTACTTTATGGCCTACTGTTATGTGATTGTTAGACTTTGCAAGAATAACCAAGCTGCCCAAGTTAAGCTACGGAATGAGTTTAAGACTAAAATGTCTGATGACTTGAACACAGCACCCATATTGACTGGTGCTTTGCAAGATGCCTTGAGGTCTATAAACAGTTTTGTGCCTGATCTTAAGAAGAAGCAGCAGAAACAAAAACAATCATCCGTAATCCAGGCCCTAGTTGCCACAACAAGAGAAGTTAGAAGAGTTCTGGGCATTTTGGGTCTGCTATCCTCCGATACATACTCTGAGGTTTTGCAGGAATTGAAAAAGAAAGCTTTGAACAGGGCAGGACTTACTGAAGAGGATGTGCTGCTTGCGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

346

Amino Acids

39.68

Weight (kDa)

8.08

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	17 - 186	1.6e-56	tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g	PF09334	35 - 147	1.9e-06	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AasI	GACNNNNNNGTC	1 cut(s)	757
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	2 cut(s)	132, 343
AciI	CCGC	6 cut(s)	90, 130, 135, 199, 341, 497
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	3 cut(s)	251, 320, 369
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	3 cut(s)	8, 446, 640
AcuI	CTGAAG	2 cut(s)	142, 1032
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	4 cut(s)	83, 194, 650, 668
AfiI	CCNNNNNNNGG	2 cut(s)	43, 458
AflII	CTTAAG	1 cut(s)	842
AgsI	TTSAA	4 cut(s)	52, 772, 979, 994
AjnI	CCWGG	2 cut(s)	572, 882
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	3 cut(s)	719, 733, 989
AluI	AGCT	3 cut(s)	719, 733, 989
Alw21I	GWGCWC	1 cut(s)	156
AlwI	GGATC	3 cut(s)	251, 320, 369
AoxI	GGCC	3 cut(s)	460, 675, 885
ApeKI	GCWGC	3 cut(s)	719, 853, 1024
ApoI	RAATTY	3 cut(s)	8, 446, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	781, 813
AspLEI	GCGC	2 cut(s)	134, 531
AspS9I	GGNCC	1 cut(s)	886
AsuHPI	GGTGA	2 cut(s)	199, 512
BalI	TGGCCA	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	706, 865, 1011
BccI	CCATC	2 cut(s)	227, 413
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	574, 884
BclI	TGATCA	1 cut(s)	352
BfaI	CTAG	1 cut(s)	890
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	842
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	6 cut(s)	91, 135, 341, 720, 854, 1025
BlsI	GCNGC	6 cut(s)	92, 136, 342, 721, 855, 1026
Bme1390I	CCNGG	2 cut(s)	574, 884
BmgT120I	GGNCC	1 cut(s)	886
BmrFI	CCNGG	2 cut(s)	574, 884
BmsI	GCATC	1 cut(s)	796
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	832
BsaAI	YACGTR	3 cut(s)	192, 196, 412
BsaHI	GRCGYC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 458
Bse1I	ACTGG	1 cut(s)	796
BseBI	CCWGG	2 cut(s)	574, 884
BseGI	GGATG	3 cut(s)	430, 872, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	43, 458
BseMII	CTCAG	1 cut(s)	951
BseNI	ACTGG	1 cut(s)	796
BseXI	GCAGC	3 cut(s)	706, 865, 1011
Bsh1236I	CGCG	2 cut(s)	132, 343
BshFI	GGCC	3 cut(s)	462, 677, 887
BsiHKAI	GWGCWC	1 cut(s)	156
BsiWI	CGTACG	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	43, 458
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	3 cut(s)	462, 677, 887
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
BspACI	CCGC	6 cut(s)	90, 130, 135, 199, 341, 497
BspANI	GGCC	3 cut(s)	462, 677, 887
BspCNI	CTCAG	1 cut(s)	952
BspFNI	CGCG	2 cut(s)	132, 343
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	3 cut(s)	251, 320, 369
BspQI	GCTCTTC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	842
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	796
BssMI	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	574, 884
Bst4CI	ACNGT	2 cut(s)	683, 827
Bst6I	CTCTTC	3 cut(s)	161, 910, 1008
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	842
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	648
BstBAI	YACGTR	3 cut(s)	192, 196, 412
BstC8I	GCNNGC	2 cut(s)	130, 1029
BstDEI	CTNAG	2 cut(s)	108, 960
BstF5I	GGATG	3 cut(s)	430, 872, 1024
BstFNI	CGCG	2 cut(s)	132, 343
BstHHI	GCGC	2 cut(s)	134, 531
BstKTI	GATC	7 cut(s)	259, 313, 328, 355, 364, 390, 841
BstMBI	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 545, 578, 893
BstNI	CCWGG	2 cut(s)	574, 884
BstSCI	CCNGG	2 cut(s)	572, 882
BstSFI	CTRYAG	1 cut(s)	537
BstSNI	TACGTA	1 cut(s)	412
BstUI	CGCG	2 cut(s)	132, 343
BstV1I	GCAGC	3 cut(s)	706, 865, 1011
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	256, 310
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	256, 310
BsuRI	GGCC	3 cut(s)	462, 677, 887
BtsCI	GGATG	3 cut(s)	430, 872, 1024
Cac8I	GCNNGC	2 cut(s)	130, 1029
CfoI	GCGC	2 cut(s)	134, 531
Cfr13I	GGNCC	1 cut(s)	886
CseI	GACGC	2 cut(s)	40, 82
Csp6I	GTAC	4 cut(s)	82, 193, 649, 667
CviAII	CATG	3 cut(s)	125, 304, 358
CviQI	GTAC	4 cut(s)	82, 193, 649, 667
DdeI	CTNAG	2 cut(s)	108, 960
DpnI	GATC	7 cut(s)	258, 312, 327, 354, 363, 389, 840
DpnII	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
DrdI	GACNNNNNNGTC	1 cut(s)	757
DseDI	GACNNNNNNGTC	1 cut(s)	757
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	3 cut(s)	161, 910, 1008
EarI	CTCTTC	3 cut(s)	161, 910, 1008
Eco105I	TACGTA	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	142, 1032
EcoO109I	RGGNCCY	1 cut(s)	886
EcoRII	CCWGG	2 cut(s)	572, 882
FaeI	CATG	3 cut(s)	128, 307, 361
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	3 cut(s)	124, 303, 357
FauI	CCCGC	2 cut(s)	137, 490
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	6 cut(s)	91, 135, 341, 720, 854, 1025
FokI	GGATG	3 cut(s)	437, 859, 1031
Fsp4HI	GCNGC	6 cut(s)	91, 135, 341, 720, 854, 1025
FspBI	CTAG	1 cut(s)	890
GlaI	GCGC	2 cut(s)	133, 530
GluI	GCNGC	6 cut(s)	91, 135, 341, 720, 854, 1025
GsuI	CTGGAG	1 cut(s)	595
HaeIII	GGCC	3 cut(s)	462, 677, 887
HgaI	GACGC	2 cut(s)	40, 82
HhaI	GCGC	2 cut(s)	134, 531
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	128, 307, 361
Hin6I	GCGC	2 cut(s)	132, 529
HinP1I	GCGC	2 cut(s)	132, 529
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	987
HphI	GGTGA	2 cut(s)	199, 512
Hpy166II	GTNNAC	2 cut(s)	394, 503
Hpy188I	TCNGA	6 cut(s)	161, 352, 366, 763, 949, 961
Hpy188III	TCNNGA	2 cut(s)	65, 471
Hpy8I	GTNNAC	2 cut(s)	394, 503
Hpy99I	CGWCG	2 cut(s)	71, 395
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	683, 827
HpyCH4IV	ACGT	5 cut(s)	60, 84, 191, 195, 411
HpyCH4V	TGCA	7 cut(s)	539, 548, 567, 634, 705, 802, 970
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 545, 578, 893
HpyF3I	CTNAG	2 cut(s)	108, 960
HpySE526I	ACGT	5 cut(s)	60, 84, 191, 195, 411
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	128, 307, 361
HspAI	GCGC	2 cut(s)	132, 529
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	3 cut(s)	706, 865, 1011
LweI	GCATC	1 cut(s)	796
MaeI	CTAG	1 cut(s)	890
MaeII	ACGT	5 cut(s)	60, 84, 191, 195, 411
MaeIII	GTNAC	3 cut(s)	94, 187, 624
MalI	GATC	7 cut(s)	258, 312, 327, 354, 363, 389, 840
MboI	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
MboII	GAAGA	6 cut(s)	40, 148, 266, 859, 927, 1025
MflI	RGATCY	2 cut(s)	256, 310
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	9 cut(s)	8, 142, 228, 446, 454, 464, 616, 640, 974
MluNI	TGGCCA	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	37, 64, 332, 590, 807, 955, 955, 1009
Mox20I	TGGCCA	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	7 cut(s)	167, 269, 521, 729, 747, 843, 1036
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	462
MspCI	CTTAAG	1 cut(s)	842
MspR9I	CCNGG	2 cut(s)	574, 884
Mva1269I	GAATGC	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	574, 884
MvnI	CGCG	2 cut(s)	132, 343
MwoI	GCNNNNNNNGC	4 cut(s)	134, 545, 578, 893
NdeII	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
NlaIII	CATG	3 cut(s)	128, 307, 361
NmuCI	GTSAC	2 cut(s)	94, 187
OliI	CACNNNNGTG	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 90
PctI	GAATGC	1 cut(s)	591
Pfl23II	CGTACG	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	6 cut(s)	92, 136, 342, 721, 855, 1026
Ppu21I	YACGTR	3 cut(s)	192, 196, 412
PsiI	TTATAA	1 cut(s)	183
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	572, 882
PspGI	CCWGG	2 cut(s)	572, 882
PspLI	CGTACG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	886
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	256, 310
RsaI	GTAC	4 cut(s)	83, 194, 650, 668
RsaNI	GTAC	4 cut(s)	82, 193, 649, 667
RseI	CAYNNNNRTG	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	7 cut(s)	167, 269, 521, 729, 747, 843, 1036
SatI	GCNGC	6 cut(s)	91, 135, 341, 720, 854, 1025
Sau3AI	GATC	7 cut(s)	256, 310, 325, 352, 361, 387, 838
Sau96I	GGNCC	1 cut(s)	886
ScrFI	CCNGG	2 cut(s)	574, 884
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	796
SfcI	CTRYAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	811, 842
SmoI	CTYRAG	2 cut(s)	811, 842
SnaBI	TACGTA	1 cut(s)	412
Sse9I	AATT	9 cut(s)	8, 142, 228, 446, 454, 464, 616, 640, 974
SsiI	CCGC	6 cut(s)	90, 130, 135, 199, 341, 497
SspMI	CTAG	1 cut(s)	890
StyD4I	CCNGG	2 cut(s)	572, 882
TaaI	ACNGT	2 cut(s)	683, 827
TaiI	ACGT	5 cut(s)	63, 87, 194, 198, 414
TaqI	TCGA	3 cut(s)	26, 324, 393
TasI	AATT	9 cut(s)	8, 142, 228, 446, 454, 464, 616, 640, 974
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	3 cut(s)	93, 137, 343
Tru1I	TTAA	7 cut(s)	167, 269, 521, 729, 747, 843, 1036
Tru9I	TTAA	7 cut(s)	167, 269, 521, 729, 747, 843, 1036
TseFI	GTSAC	2 cut(s)	94, 187
TseI	GCWGC	3 cut(s)	719, 853, 1024
Tsp45I	GTSAC	2 cut(s)	94, 187
TspDTI	ATGAA	2 cut(s)	320, 414
TspGWI	ACGGA	2 cut(s)	751, 865
Van91I	CCANNNNNTGG	1 cut(s)	458
Vha464I	CTTAAG	1 cut(s)	842
XapI	RAATTY	3 cut(s)	8, 446, 640
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.