Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001861

Physical Location & Seq

Genomic Coordinates Forward (+)

14920020 .. 14920721

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAACTCCTTAGGGAAGAAAGCGCAGTCCTGCAGATTTTGCACTGTGGAAGTCTGCAAAGCCTGGAGAGCCAAATTGGGACAGCCCTTGGGGACGAGAAAGGCCGTGGTGGCACATTTGAATGCGGTGCCATGAGTGCTCATCGTCTTACATTCAAGTTTGGTATTCATGGTGGTGGTATCAACTTGATTTTTCCACATCATGAAAATGAGATTGCTCATCAAAGTTGTGCCGGAAGGTGCATCAGATGCAGTGTGAAGATGCTTTATCTCATACAATACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

96

Amino Acids

10.4

Weight (kDa)

6.57

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1e	PF01406	34 - 78	1e-12	tRNA synthetases class I (C) catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56300 AT3G56300 AT3G56300
fragaria_vesca	FvH4_2g17241 FvH4_3g19570 FvH4_3g19580 FvH4_3g19590 FvH4_4g27030 FvH4_4g27030 FvH4_4g27030
malus_domestica	MD04G1098100.v1.1 MD13G1039300.v1.1 MD16G1040200.v1.1 MD16G1076600.v1.1 MD17G1183300.v1.1
prunus_persica	Prupe.1G313900_v2.0.a1
pyrus_communis	pycom04g11630 pycom13g03380 pycom16g03490
rosa_chinensis	RchiOBHm_Chr1g0323701 RchiOBHm_Chr1g0362331 RchiOBHm_Chr2g0088831 RchiOBHm_Chr4g0434831 RchiOBHm_Chr5g0002801 RchiOBHm_Chr5g0002811
rosa_laevigata	RLG00000006644 RLG00000031061
rosa_multiflora	Rmu_sc0000633.1_g000010 Rmu_sc0013603.1_g000016
rosa_roxburghii	Rroxscaffold_1G00073040 Rroxscaffold_5G00376040
rosa_rugosa	Rorug04G0279300 Rorug04G0279300 Rorug04G0399800
rosa_samantha	Rh1DG061300 Rh3CG112600 Rh4AG335300 Rh4BG343800 Rh4CG358200 Rh4DG337700 Rh5AG022600 Rh5BG025300 Rh5CG025100 Rh5DG023700
rosa_wichuraiana	Rw4G029240 Rw5G002100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AciI	CCGC	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	122, 157
AjnI	CCWGG	1 cut(s)	63
Alw21I	GWGCWC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	128
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	32
BglI	GCCNNNNNGGC	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	239, 252, 252
BpmI	CTGGAG	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	88, 106
Bse21I	CCTNAGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	88, 106
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	94, 107
BsmFI	GGGAC	2 cut(s)	94, 107
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	88, 106
BssSI	CACGAG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	47
BstAPI	GCANNNNNTGC	2 cut(s)	40, 249
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 69, 111, 137, 249
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	43, 259
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	26
CviAII	CATG	3 cut(s)	133, 170, 203
CviJI	RGCY	4 cut(s)	63, 72, 86, 105
CviKI_1	RGCY	4 cut(s)	63, 72, 86, 105
DdeI	CTNAG	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	136, 173, 206
FaiI	YATR	4 cut(s)	134, 171, 204, 275
FaqI	GGGAC	2 cut(s)	94, 107
FatI	CATG	3 cut(s)	132, 169, 202
GlaI	GCGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	136, 173, 206
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	2 cut(s)	203, 285
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	34, 43, 58, 243, 252
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 69, 111, 137, 249
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	136, 173, 206
HspAI	GCGC	1 cut(s)	24
LpnPI	CCDG	4 cut(s)	44, 50, 77, 247
LweI	GCATC	3 cut(s)	239, 252, 252
MboII	GAAGA	2 cut(s)	29, 271
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	1 cut(s)	75
MslI	CAYNNNNRTG	3 cut(s)	121, 174, 207
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	5 cut(s)	40, 69, 111, 137, 249
NlaIII	CATG	3 cut(s)	136, 173, 206
NlaIV	GGNNCC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	202
PctI	GAATGC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	36
RseI	CAYNNNNRTG	3 cut(s)	121, 174, 207
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	1 cut(s)	242
SfaNI	GCATC	3 cut(s)	239, 252, 252
SfcI	CTRYAG	1 cut(s)	32
SmiMI	CAYNNNNRTG	3 cut(s)	121, 174, 207
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	1 cut(s)	75
TscAI	CASTG	2 cut(s)	50, 259
TspDTI	ATGAA	2 cut(s)	158, 219
TspRI	CASTG	2 cut(s)	50, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.