AT3G58390
ERF Family

May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21600030 .. 21601334
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58390.1

Sequence Viewer

Length: 1188 bp
ATGAAAATCATTCGCAAGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAGATGATGGCAGAGGACTCGGATGATCTCTGGTATACTTATAACCTGATTGGCCCGGAGGATAGTGTAATGGCTATCACTTTCAGAAAAGTTGGTGGTGAAGGAAGAGACTCGACTCCATCGCTAAGTCGAATAGAAAGCAAATACCTTGGAAAGAAAAGATCTTTCACCCGGACTGAACGTGTTAAACTTAAGCTAGAAGTACAAGTTGAGGAGGTGGACTATGACAAAGACGGCGATGTTATGCGCATACGCGGGAAGAATATCATGGAGAACGAGCATGTAAGGATTGGTGCATTCCATACTTTGGAGATTGAGCTTAAACGACCTTTTTTATTGAGAAAGGAAAATTGGGACTCACTGGCTCTTGATACACTCAAGCAGGCCTCAGATCTTGCAGCTAGTGCTGATTTAGCTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTCCTTGCCGGCAAAAGTGTAAAAAGTTGCGGTGCACGAATAAAAACATCGATTCCTTGGAAGCATGGAGCTGGAACGGCTGGTTACGAGTCAGTTTTGAAGAAATTCTTTGAGAATGTTGTGCAAGCCTTTCTGAAACACGTTGACTTCAGTGTGGTTCGATGCGCAGTGATTGCAAGTCCCGGGTTTACAAAAGATCAGTTTCATCGCCACCTATTGTTGGAAGCAGAGAGAAGACAGTTGAGACCTATTCTTGAGAACAAATCACGTTTCATTCTGGTGCACACAAACTCAGGATATAAACATAGCCTAAGCGAGGTTTTGCATGACCCTAACGTGATGAATATGATCAAAGATACTAAAGCAGCAAAAGAGGTCAAAGCTCTCAACGATTTCTTCACCATGTTTTCGAATGATCCAAATAGAGCATGTTATGGACCAAAACATGTGGAAGTTGCTCATGAACGAATGGCAATCCAAACACTTCTCATTATAGATGGGCTATTTAGGAACTCTGACGTGAAAACAAGGAAGAAGTATGTGGATTTTGTGGAGTCGGTGAAAGATTCAGGAGGAGAGGTTTTTATATTTTCGTCAATGCATGCTTCAGGGGAACAACTAGCACAGCATACTGGAATTGCAGCTATTCTTAGGTTCCCTTTACCAGATCTAGAAGACATTGAGATGTAA

Protein Analysis

395

Amino Acids

44.72

Weight (kDa)

8.71

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pelota_N PF26356 1 - 145 5.4e-40 Pelota N-terminal domain
eRF1_2 PF03464 154 - 285 1.5e-25 eRF1 domain 2
eRF1_3 PF03465 289 - 387 4.1e-28 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
Acc16I TGCGCA 2 cut(s) 296, 664
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 1 cut(s) 83
AccII CGCG 1 cut(s) 303
AciI CCGC 2 cut(s) 303, 528
AclWI GGATC 1 cut(s) 908
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 2 cut(s) 631, 1089
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 3 cut(s) 355, 718, 814
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 3 cut(s) 229, 637, 943
AgsI TTSAA 1 cut(s) 598
AjiI CACGTC 1 cut(s) 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AluBI AGCT 7 cut(s) 244, 367, 449, 464, 569, 881, 1142
AluI AGCT 7 cut(s) 244, 367, 449, 464, 569, 881, 1142
Alw21I GWGCWC 2 cut(s) 535, 783
Alw26I GTCTC 2 cut(s) 150, 736
Alw44I GTGCAC 2 cut(s) 531, 779
AlwI GGATC 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 680
AoxI GGCC 2 cut(s) 100, 432
ApaLI GTGCAC 2 cut(s) 531, 779
ApeKI GCWGC 3 cut(s) 446, 863, 1139
ApoI RAATTY 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 2 cut(s) 297, 665
AspS9I GGNCC 3 cut(s) 35, 101, 935
AsuC2I CCSGG 5 cut(s) 39, 104, 220, 681, 682
AsuHPI GGTGA 4 cut(s) 158, 208, 889, 1069
AsuII TTCGAA 1 cut(s) 908
AvaI CYCGRG 1 cut(s) 680
AvaII GGWCC 2 cut(s) 35, 935
BaeGI GKGCMC 2 cut(s) 535, 783
BbsI GAAGAC 2 cut(s) 739, 1179
Bbv12I GWGCWC 2 cut(s) 535, 783
BbvI GCAGC 3 cut(s) 458, 875, 1151
BccI CCATC 3 cut(s) 49, 175, 989
BceAI ACGGC 2 cut(s) 298, 591
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 5 cut(s) 39, 104, 220, 681, 682
BcoDI GTCTC 2 cut(s) 150, 736
BfaI CTAG 4 cut(s) 245, 450, 1118, 1169
BfmI CTRYAG 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 239
BglII AGATCT 3 cut(s) 209, 439, 1165
BisI GCNGC 3 cut(s) 447, 864, 1140
BlsI GCNGC 3 cut(s) 448, 865, 1141
Bme1390I CCNGG 5 cut(s) 39, 104, 220, 681, 682
Bme18I GGWCC 2 cut(s) 35, 935
BmeT110I CYCGRG 1 cut(s) 680
BmgBI CACGTC 1 cut(s) 1018
BmgT120I GGNCC 3 cut(s) 35, 101, 935
BmiI GGNNCC 2 cut(s) 37, 1154
BmrFI CCNGG 5 cut(s) 39, 104, 220, 681, 682
BmsI GCATC 1 cut(s) 650
BpiI GAAGAC 2 cut(s) 739, 1179
Bpu10I CCTNAGC 1 cut(s) 809
Bpu14I TTCGAA 1 cut(s) 908
BpuEI CTTGAG 2 cut(s) 410, 773
BpuMI CCSGG 5 cut(s) 39, 104, 220, 681, 682
Bsa29I ATCGAT 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 3 cut(s) 196, 554, 680
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 718, 814
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 3 cut(s) 414, 492, 1135
BseCI ATCGAT 1 cut(s) 548
BseDI CCNNGG 3 cut(s) 196, 554, 680
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 355, 718, 814
BseMII CTCAG 2 cut(s) 450, 804
BseNI ACTGG 3 cut(s) 414, 492, 1135
BseRI GAGGAG 2 cut(s) 275, 1086
BseSI GKGCMC 2 cut(s) 535, 783
BseXI GCAGC 3 cut(s) 458, 875, 1151
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 102, 434
BshVI ATCGAT 1 cut(s) 548
BsiHKAI GWGCWC 2 cut(s) 535, 783
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 5 cut(s) 39, 104, 220, 507, 681
BslFI GGGAC 2 cut(s) 416, 663
BslI CCNNNNNNNGG 3 cut(s) 355, 718, 814
BsmAI GTCTC 2 cut(s) 150, 736
BsmFI GGGAC 2 cut(s) 416, 663
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 2 cut(s) 102, 434
Bso31I GGTCTC 1 cut(s) 736
BsoBI CYCGRG 1 cut(s) 680
Bsp119I TTCGAA 1 cut(s) 908
Bsp1286I GDGCHC 2 cut(s) 535, 783
Bsp143I GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
BspACI CCGC 2 cut(s) 303, 528
BspANI GGCC 2 cut(s) 102, 434
BspCNI CTCAG 2 cut(s) 449, 803
BspDI ATCGAT 1 cut(s) 548
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 2 cut(s) 37, 1154
BspPI GGATC 1 cut(s) 908
BspT104I TTCGAA 1 cut(s) 908
BspTI CTTAAG 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 736
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 3 cut(s) 414, 492, 1135
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 3 cut(s) 196, 554, 680
BssMI GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
BssNAI GTATAC 1 cut(s) 84
BssT1I CCWWGG 2 cut(s) 196, 554
Bst1107I GTATAC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 738
Bst6I CTCTTC 1 cut(s) 148
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 2 cut(s) 452, 671
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 4 cut(s) 432, 508, 624, 1101
BstDEI CTNAG 5 cut(s) 173, 436, 790, 809, 1148
BstENI CCTNNNNNAGG 1 cut(s) 812
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 2 cut(s) 297, 665
BstKTI GATC 7 cut(s) 76, 212, 442, 697, 849, 916, 1168
BstMAI GTCTC 2 cut(s) 150, 736
BstMBI GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
BstMWI GCNNNNNNNGC 4 cut(s) 452, 461, 575, 671
BstNSI RCATGY 4 cut(s) 332, 930, 947, 1103
BstSCI CCNGG 5 cut(s) 37, 102, 218, 679, 680
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 2 cut(s) 535, 783
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 3 cut(s) 458, 875, 1151
BstV2I GAAGAC 2 cut(s) 739, 1179
BstX2I RGATCY 3 cut(s) 209, 439, 1165
BstYI RGATCY 3 cut(s) 209, 439, 1165
BstZ17I GTATAC 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 548
BsuRI GGCC 2 cut(s) 102, 434
BsuTUI ATCGAT 1 cut(s) 548
BtgZI GCGATG 3 cut(s) 153, 300, 689
BtrI CACGTC 1 cut(s) 1018
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 3 cut(s) 407, 655, 672
Cac8I GCNNGC 4 cut(s) 432, 508, 624, 1101
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 297, 665
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 3 cut(s) 35, 101, 935
Cfr9I CCCGGG 1 cut(s) 680
ClaI ATCGAT 1 cut(s) 548
Csp6I GTAC 1 cut(s) 251
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 9 cut(s) 316, 329, 563, 824, 901, 927, 944, 959, 1100
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 5 cut(s) 173, 436, 790, 809, 1148
DpnI GATC 7 cut(s) 75, 211, 441, 696, 848, 915, 1167
DpnII GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 196, 554
Eco147I AGGCCT 1 cut(s) 434
Eco31I GGTCTC 1 cut(s) 736
Eco47I GGWCC 2 cut(s) 35, 935
Eco57I CTGAAG 2 cut(s) 631, 1089
Eco88I CYCGRG 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 812
EcoT14I CCWWGG 2 cut(s) 196, 554
EcoT22I ATGCAT 1 cut(s) 1101
ErhI CCWWGG 2 cut(s) 196, 554
FaeI CATG 9 cut(s) 319, 332, 566, 827, 904, 930, 947, 962, 1103
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FaqI GGGAC 2 cut(s) 416, 663
FatI CATG 9 cut(s) 315, 328, 562, 823, 900, 926, 943, 958, 1099
FauI CCCGC 1 cut(s) 296
FbaI TGATCA 1 cut(s) 846
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 447, 864, 1140
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 447, 864, 1140
FspAI RTGCGCAY 1 cut(s) 296
FspBI CTAG 4 cut(s) 245, 450, 1118, 1169
FspI TGCGCA 2 cut(s) 296, 664
GlaI GCGC 2 cut(s) 296, 664
GluI GCNGC 3 cut(s) 447, 864, 1140
HaeIII GGCC 2 cut(s) 102, 434
HapII CCGG 5 cut(s) 39, 104, 220, 507, 681
HhaI GCGC 2 cut(s) 297, 665
Hin1II CATG 9 cut(s) 319, 332, 566, 827, 904, 930, 947, 962, 1103
Hin6I GCGC 2 cut(s) 295, 663
HinP1I GCGC 2 cut(s) 295, 663
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 8 cut(s) 65, 158, 163, 404, 550, 587, 1052, 1064
HpaII CCGG 5 cut(s) 39, 104, 220, 507, 681
HphI GGTGA 4 cut(s) 158, 208, 889, 1069
Hpy166II GTNNAC 6 cut(s) 84, 268, 533, 643, 687, 781
Hpy188I TCNGA 5 cut(s) 70, 134, 439, 633, 1015
Hpy188III TCNNGA 6 cut(s) 416, 752, 792, 959, 1068, 1169
Hpy8I GTNNAC 6 cut(s) 84, 268, 533, 643, 687, 781
HpyAV CCTTC 2 cut(s) 143, 476
HpyCH4III ACNGT 1 cut(s) 738
HpyCH4IV ACGT 5 cut(s) 229, 639, 766, 834, 1017
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 461, 575, 671
HpyF3I CTNAG 5 cut(s) 173, 436, 790, 809, 1148
HpySE526I ACGT 5 cut(s) 229, 639, 766, 834, 1017
Hsp92II CATG 9 cut(s) 319, 332, 566, 827, 904, 930, 947, 962, 1103
HspAI GCGC 2 cut(s) 295, 663
KroI GCCGGC 1 cut(s) 506
KroNI GCCGGC 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
LmnI GCTCC 1 cut(s) 566
Lsp1109I GCAGC 3 cut(s) 458, 875, 1151
LweI GCATC 1 cut(s) 650
MaeI CTAG 4 cut(s) 245, 450, 1118, 1169
MaeII ACGT 5 cut(s) 229, 639, 766, 834, 1017
MaeIII GTNAC 1 cut(s) 581
MalI GATC 7 cut(s) 75, 211, 441, 696, 848, 915, 1167
MboI GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
MboII GAAGA 8 cut(s) 165, 319, 490, 610, 744, 886, 1042, 1184
MflI RGATCY 3 cut(s) 209, 439, 1165
MhlI GDGCHC 2 cut(s) 535, 783
MluCI AATT 3 cut(s) 397, 602, 1134
MlyI GAGTC 6 cut(s) 59, 152, 157, 398, 596, 1061
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 9 cut(s) 55, 100, 253, 256, 445, 808, 865, 1064, 1069
Mph1103I ATGCAT 1 cut(s) 1101
MroNI GCCGGC 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 602
MseI TTAA 4 cut(s) 48, 234, 240, 369
MslI CAYNNNNRTG 2 cut(s) 776, 1181
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 5 cut(s) 39, 104, 220, 507, 681
MspR9I CCNGG 5 cut(s) 39, 104, 220, 681, 682
Mva1269I GAATGC 1 cut(s) 344
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 4 cut(s) 452, 461, 575, 671
NaeI GCCGGC 1 cut(s) 508
NciI CCSGG 5 cut(s) 39, 104, 220, 681, 682
NdeII GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
NgoMIV GCCGGC 1 cut(s) 506
NlaIII CATG 9 cut(s) 319, 332, 566, 827, 904, 930, 947, 962, 1103
NlaIV GGNNCC 2 cut(s) 37, 1154
NsbI TGCGCA 2 cut(s) 296, 664
NsiI ATGCAT 1 cut(s) 1101
NspI RCATGY 4 cut(s) 332, 930, 947, 1103
NspV TTCGAA 1 cut(s) 908
PaeI GCATGC 1 cut(s) 1103
PagI TCATGA 1 cut(s) 958
PceI AGGCCT 1 cut(s) 434
PciI ACATGT 1 cut(s) 943
PctI GAATGC 1 cut(s) 344
PdiI GCCGGC 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 2 cut(s) 550, 1064
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 3 cut(s) 448, 865, 1141
PleI GAGTC 6 cut(s) 59, 152, 157, 398, 595, 1060
PpsI GAGTC 6 cut(s) 59, 152, 157, 398, 595, 1060
PscI ACATGT 1 cut(s) 943
PsiI TTATAA 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 37, 1154
PspPI GGNCC 3 cut(s) 35, 101, 935
PsuI RGATCY 3 cut(s) 209, 439, 1165
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
RseI CAYNNNNRTG 2 cut(s) 776, 1181
SaqAI TTAA 4 cut(s) 48, 234, 240, 369
SatI GCNGC 3 cut(s) 447, 864, 1140
Sau3AI GATC 7 cut(s) 73, 209, 439, 694, 846, 913, 1165
Sau96I GGNCC 3 cut(s) 35, 101, 935
SchI GAGTC 6 cut(s) 59, 152, 157, 398, 596, 1061
ScrFI CCNGG 5 cut(s) 39, 104, 220, 681, 682
SduI GDGCHC 2 cut(s) 535, 783
SfaNI GCATC 1 cut(s) 650
SfcI CTRYAG 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 908
SinI GGWCC 2 cut(s) 35, 935
SmaI CCCGGG 1 cut(s) 682
SmiMI CAYNNNNRTG 2 cut(s) 776, 1181
SmlI CTYRAG 3 cut(s) 239, 425, 752
SmoI CTYRAG 3 cut(s) 239, 425, 752
SphI GCATGC 1 cut(s) 1103
Sse9I AATT 3 cut(s) 397, 602, 1134
SseBI AGGCCT 1 cut(s) 434
SsiI CCGC 2 cut(s) 303, 528
SspMI CTAG 4 cut(s) 245, 450, 1118, 1169
StuI AGGCCT 1 cut(s) 434
StyD4I CCNGG 5 cut(s) 37, 102, 218, 679, 680
StyI CCWWGG 2 cut(s) 196, 554
TaaI ACNGT 1 cut(s) 738
TaiI ACGT 5 cut(s) 232, 642, 769, 837, 1020
TaqI TCGA 5 cut(s) 161, 178, 548, 658, 908
TasI AATT 3 cut(s) 397, 602, 1134
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 2 cut(s) 550, 1064
Tru1I TTAA 4 cut(s) 48, 234, 240, 369
Tru9I TTAA 4 cut(s) 48, 234, 240, 369
TscAI CASTG 3 cut(s) 414, 655, 672
TseI GCWGC 3 cut(s) 446, 863, 1139
TspDTI ATGAA 5 cut(s) 17, 692, 760, 854, 975
TspMI CCCGGG 1 cut(s) 680
TspRI CASTG 3 cut(s) 414, 655, 672
Van91I CCANNNNNTGG 1 cut(s) 355
Vha464I CTTAAG 1 cut(s) 239
VneI GTGCAC 2 cut(s) 531, 779
VpaK11BI GGWCC 2 cut(s) 35, 935
XagI CCTNNNNNAGG 1 cut(s) 812
XapI RAATTY 1 cut(s) 602
XbaI TCTAGA 1 cut(s) 1168
XceI RCATGY 4 cut(s) 332, 930, 947, 1103
XmaI CCCGGG 1 cut(s) 680
XmiI GTMKAC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 4 cut(s) 245, 450, 1118, 1169
Zsp2I ATGCAT 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.