AT4G27650
ERF Family

May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
13803268 .. 13808031
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27650.1

Sequence Viewer

Length: 1137 bp
ATGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAGATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTATAACTTGATTGCTGTGGGCGATAGTGTAATGGCTGTCACTTTCAGAAAAGTTCAGAGAGAGATACCTGGTGGGGGAAGAGACTCTGAACGTGTTAAACTGAAGCTGGAAGTACAAGTTGAGGAGGTGGACTATGACAAAGACGGATCTGTTTTGCGCATACGTGGCAAAAATATCCTGGAGAATGAGCACGTAAAGATTGGTGCATTCCATACTTTGGAACTTGAGCTGAAACGACCTTTTGTGTTGAGAAAGGAAATGTGGGACTCAATGGCTCTTGATACACTCAAACAGGCCTCAGATCCCGCTGCTAGTGCTGATCTAGCTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTCCTTGTGGGCAGAAGTGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAGCATGGACCTGCAATTGCTGGTTACGAGTCTGCTTTGAAGAAATTTTTTGAGAATGTTCTGCAGGCCTTTGTGAAACATGTTGACTTCAGTGTCGTTCGCTGTGCAGTAGTTGCAAGTCCCGGCTTCACAAAGGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACTGAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTGGATATAGACATAGCCTGGGTGAGGTTCTCCATGCCCCCAACGTGATGAATATGATAAAAGATACAAAAGCAGCAAAAGAGGTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACTGAACCAGATCGGGCATGCTATGGACCAAAACACGTGGAAGTTGCAAATGAACGAATGGCAATTCAAACGCTTCTCATAACGGACGAGCTTTTCAGGAATTCTGACGTGAAAACAAGGAAGAAGTATGTGAATTTGGTGGAGTCGGTAAAAGATTCGGGAGGAGATGCTTTTATATTTTCGGCGATGCATGTGTCAGGAGAACAATTGGCACAGCTGACTGGAATAGCAGCTCTTCTCAGGTTCCCTTTACCAGAACTCGAAGACATTGAGATGTAA

Protein Analysis

378

Amino Acids

42.52

Weight (kDa)

7.8

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pelota_N PF26356 1 - 128 4.6e-45 Pelota N-terminal domain
eRF1_2 PF03464 137 - 268 3.3e-28 eRF1 domain 2
eRF1_3 PF03465 272 - 370 4.1e-28 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AasI GACNNNNNNGTC 1 cut(s) 599
Acc16I TGCGCA 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 304
AciI CCGC 1 cut(s) 393
AclWI GGATC 3 cut(s) 241, 383, 651
AcsI RAATTY 3 cut(s) 551, 958, 991
AcuI CTGAAG 2 cut(s) 209, 580
AcvI CACGTG 1 cut(s) 895
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 4 cut(s) 161, 304, 504, 763
AflIII ACRYGT 3 cut(s) 178, 586, 892
AgsI TTSAA 3 cut(s) 547, 858, 926
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 3 cut(s) 154, 264, 756
AluBI AGCT 7 cut(s) 193, 316, 413, 830, 949, 1075, 1091
AluI AGCT 7 cut(s) 193, 316, 413, 830, 949, 1075, 1091
Alw21I GWGCWC 3 cut(s) 279, 484, 732
Alw26I GTCTC 2 cut(s) 162, 685
Alw44I GTGCAC 2 cut(s) 480, 728
AlwI GGATC 3 cut(s) 241, 383, 651
AoxI GGCC 2 cut(s) 381, 573
ApaLI GTGCAC 2 cut(s) 480, 728
ApeKI GCWGC 3 cut(s) 395, 812, 1088
ApoI RAATTY 3 cut(s) 551, 958, 991
AspA2I CCTAGG 1 cut(s) 503
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 3 cut(s) 35, 515, 884
AsuC2I CCSGG 2 cut(s) 39, 630
AsuHPI GGTGA 1 cut(s) 773
AvaII GGWCC 3 cut(s) 35, 515, 884
AvrII CCTAGG 1 cut(s) 503
BaeGI GKGCMC 2 cut(s) 484, 732
BbrPI CACGTG 1 cut(s) 895
BbsI GAAGAC 2 cut(s) 688, 1128
Bbv12I GWGCWC 3 cut(s) 279, 484, 732
BbvI GCAGC 3 cut(s) 382, 824, 1100
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 462
BciT130I CCWGG 3 cut(s) 156, 266, 758
BcnI CCSGG 2 cut(s) 39, 630
BcoDI GTCTC 2 cut(s) 162, 685
BfaI CTAG 3 cut(s) 399, 410, 504
BfmI CTRYAG 2 cut(s) 414, 569
BfuAI ACCTGC 1 cut(s) 526
BisI GCNGC 3 cut(s) 396, 813, 1089
BlnI CCTAGG 1 cut(s) 503
BlsI GCNGC 3 cut(s) 397, 814, 1090
Bme1390I CCNGG 5 cut(s) 39, 156, 266, 630, 758
Bme18I GGWCC 3 cut(s) 35, 515, 884
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 3 cut(s) 35, 515, 884
BmiI GGNNCC 2 cut(s) 37, 1103
BmrFI CCNGG 5 cut(s) 39, 156, 266, 630, 758
BmsI GCATC 2 cut(s) 1015, 1035
BpiI GAAGAC 2 cut(s) 688, 1128
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 39, 630
BsaAI YACGTR 4 cut(s) 251, 280, 716, 895
BsaI GGTCTC 1 cut(s) 685
BsaJI CCNNGG 2 cut(s) 503, 757
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 304, 504, 763
Bse1I ACTGG 2 cut(s) 441, 1084
BseBI CCWGG 3 cut(s) 156, 266, 758
BseDI CCNNGG 2 cut(s) 503, 757
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 4 cut(s) 161, 304, 504, 763
BseMII CTCAG 3 cut(s) 399, 680, 1111
BseNI ACTGG 2 cut(s) 441, 1084
BseRI GAGGAG 2 cut(s) 224, 1035
BseSI GKGCMC 2 cut(s) 484, 732
BseXI GCAGC 3 cut(s) 382, 824, 1100
BsgI GTGCAG 1 cut(s) 633
BshFI GGCC 2 cut(s) 383, 575
BsiHKAI GWGCWC 3 cut(s) 279, 484, 732
BsiSI CCGG 2 cut(s) 39, 630
BslFI GGGAC 2 cut(s) 365, 612
BslI CCNNNNNNNGG 4 cut(s) 161, 304, 504, 763
BsmAI GTCTC 2 cut(s) 162, 685
BsmFI GGGAC 2 cut(s) 365, 612
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 2 cut(s) 383, 575
Bso31I GGTCTC 1 cut(s) 685
Bsp1286I GDGCHC 3 cut(s) 279, 484, 732
Bsp143I GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
BspACI CCGC 1 cut(s) 393
BspANI GGCC 2 cut(s) 383, 575
BspCNI CTCAG 3 cut(s) 398, 681, 1110
BspLI GGNNCC 2 cut(s) 37, 1103
BspMAI CTGCAG 1 cut(s) 573
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 3 cut(s) 241, 383, 651
BspQI GCTCTTC 1 cut(s) 1098
BspTNI GGTCTC 1 cut(s) 685
BsrI ACTGG 2 cut(s) 441, 1084
BssECI CCNNGG 2 cut(s) 503, 757
BssMI GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
BssT1I CCWWGG 1 cut(s) 503
Bst2UI CCWGG 3 cut(s) 156, 266, 758
Bst6I CTCTTC 2 cut(s) 160, 1098
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBAI YACGTR 4 cut(s) 251, 280, 716, 895
BstC8I GCNNGC 2 cut(s) 573, 877
BstDEI CTNAG 3 cut(s) 385, 689, 1097
BstENI CCTNNNNNAGG 1 cut(s) 761
BstF5I GGATG 1 cut(s) 494
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 7 cut(s) 9, 76, 236, 391, 409, 646, 871
BstMAI GTCTC 2 cut(s) 162, 685
BstMBI GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
BstMWI GCNNNNNNNGC 4 cut(s) 252, 401, 410, 620
BstNI CCWGG 3 cut(s) 156, 266, 758
BstNSI RCATGY 4 cut(s) 590, 853, 879, 1052
BstSCI CCNGG 5 cut(s) 37, 154, 264, 628, 756
BstSFI CTRYAG 2 cut(s) 414, 569
BstSLI GKGCMC 2 cut(s) 484, 732
BstV1I GCAGC 3 cut(s) 382, 824, 1100
BstV2I GAAGAC 2 cut(s) 688, 1128
BstX2I RGATCY 2 cut(s) 233, 388
BstYI RGATCY 2 cut(s) 233, 388
BsuRI GGCC 2 cut(s) 383, 575
BtgZI GCGATG 2 cut(s) 638, 1058
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 573, 877
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 3 cut(s) 35, 515, 884
CsiI ACCWGGT 1 cut(s) 154
Csp6I GTAC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 876, 911
CviAII CATG 6 cut(s) 512, 587, 773, 850, 876, 1049
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 3 cut(s) 385, 689, 1097
DpnI GATC 7 cut(s) 8, 75, 235, 390, 408, 645, 870
DpnII GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
DrdI GACNNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 599
Eam1104I CTCTTC 2 cut(s) 160, 1098
EarI CTCTTC 2 cut(s) 160, 1098
Eco130I CCWWGG 1 cut(s) 503
Eco147I AGGCCT 2 cut(s) 383, 575
Eco31I GGTCTC 1 cut(s) 685
Eco47I GGWCC 3 cut(s) 35, 515, 884
Eco57I CTGAAG 2 cut(s) 209, 580
Eco72I CACGTG 1 cut(s) 895
EcoNI CCTNNNNNAGG 1 cut(s) 761
EcoRI GAATTC 1 cut(s) 958
EcoRII CCWGG 3 cut(s) 154, 264, 756
EcoT14I CCWWGG 1 cut(s) 503
EcoT22I ATGCAT 1 cut(s) 1050
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 6 cut(s) 515, 590, 776, 853, 879, 1052
FaqI GGGAC 2 cut(s) 365, 612
FatI CATG 6 cut(s) 511, 586, 772, 849, 875, 1048
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 396, 813, 1089
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 3 cut(s) 396, 813, 1089
FspBI CTAG 3 cut(s) 399, 410, 504
FspI TGCGCA 1 cut(s) 245
GlaI GCGC 1 cut(s) 245
GluI GCNGC 3 cut(s) 396, 813, 1089
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 383, 575
HapII CCGG 2 cut(s) 39, 630
HhaI GCGC 1 cut(s) 246
Hin1II CATG 6 cut(s) 515, 590, 776, 853, 879, 1052
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 6 cut(s) 65, 170, 353, 536, 1001, 1013
HpaII CCGG 2 cut(s) 39, 630
HphI GGTGA 1 cut(s) 773
Hpy166II GTNNAC 4 cut(s) 217, 482, 592, 730
Hpy188I TCNGA 6 cut(s) 70, 134, 144, 175, 388, 964
Hpy188III TCNNGA 5 cut(s) 365, 741, 955, 1017, 1056
Hpy8I GTNNAC 4 cut(s) 217, 482, 592, 730
HpyAV CCTTC 1 cut(s) 425
HpyCH4IV ACGT 7 cut(s) 178, 250, 279, 715, 783, 894, 966
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 401, 410, 620
HpyF3I CTNAG 3 cut(s) 385, 689, 1097
HpySE526I ACGT 7 cut(s) 178, 250, 279, 715, 783, 894, 966
Hsp92II CATG 6 cut(s) 515, 590, 776, 853, 879, 1052
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
LguI GCTCTTC 1 cut(s) 1098
Lsp1109I GCAGC 3 cut(s) 382, 824, 1100
LweI GCATC 2 cut(s) 1015, 1035
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 3 cut(s) 399, 410, 504
MaeII ACGT 7 cut(s) 178, 250, 279, 715, 783, 894, 966
MaeIII GTNAC 3 cut(s) 124, 466, 530
MalI GATC 7 cut(s) 8, 75, 235, 390, 408, 645, 870
MboI GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
MboII GAAGA 8 cut(s) 16, 177, 439, 559, 693, 991, 1085, 1133
MfeI CAATTG 2 cut(s) 522, 1064
MflI RGATCY 2 cut(s) 233, 388
MhlI GDGCHC 3 cut(s) 279, 484, 732
MluCI AATT 6 cut(s) 522, 551, 921, 958, 991, 1064
MlyI GAGTC 5 cut(s) 59, 164, 347, 545, 1010
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 7 cut(s) 55, 202, 205, 394, 757, 814, 1013
Mph1103I ATGCAT 1 cut(s) 1050
MseI TTAA 2 cut(s) 48, 183
MslI CAYNNNNRTG 1 cut(s) 1130
MspA1I CMGCKG 2 cut(s) 395, 1075
MspI CCGG 2 cut(s) 39, 630
MspR9I CCNGG 5 cut(s) 39, 156, 266, 630, 758
MunI CAATTG 2 cut(s) 522, 1064
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 3 cut(s) 156, 266, 758
MwoI GCNNNNNNNGC 4 cut(s) 252, 401, 410, 620
NciI CCSGG 2 cut(s) 39, 630
NdeII GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
NlaIII CATG 6 cut(s) 515, 590, 776, 853, 879, 1052
NlaIV GGNNCC 2 cut(s) 37, 1103
NmuCI GTSAC 2 cut(s) 124, 466
NsbI TGCGCA 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 1050
NspI RCATGY 4 cut(s) 590, 853, 879, 1052
PaeI GCATGC 1 cut(s) 879
PceI AGGCCT 2 cut(s) 383, 575
PciI ACATGT 1 cut(s) 586
PciSI GCTCTTC 1 cut(s) 1098
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 1013
PflMI CCANNNNNTGG 1 cut(s) 304
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 3 cut(s) 397, 814, 1090
PleI GAGTC 5 cut(s) 59, 164, 347, 544, 1009
PmaCI CACGTG 1 cut(s) 895
PmlI CACGTG 1 cut(s) 895
PpsI GAGTC 5 cut(s) 59, 164, 347, 544, 1009
Ppu21I YACGTR 4 cut(s) 251, 280, 716, 895
PscI ACATGT 1 cut(s) 586
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 154, 264, 756
PspCI CACGTG 1 cut(s) 895
PspGI CCWGG 3 cut(s) 154, 264, 756
PspN4I GGNNCC 2 cut(s) 37, 1103
PspPI GGNCC 3 cut(s) 35, 515, 884
PstI CTGCAG 1 cut(s) 573
PsuI RGATCY 2 cut(s) 233, 388
PvuII CAGCTG 1 cut(s) 1075
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 1130
SapI GCTCTTC 1 cut(s) 1098
SaqAI TTAA 2 cut(s) 48, 183
SatI GCNGC 3 cut(s) 396, 813, 1089
Sau3AI GATC 7 cut(s) 6, 73, 233, 388, 406, 643, 868
Sau96I GGNCC 3 cut(s) 35, 515, 884
SchI GAGTC 5 cut(s) 59, 164, 347, 545, 1010
ScrFI CCNGG 5 cut(s) 39, 156, 266, 630, 758
SduI GDGCHC 3 cut(s) 279, 484, 732
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 2 cut(s) 1015, 1035
SfcI CTRYAG 2 cut(s) 414, 569
SinI GGWCC 3 cut(s) 35, 515, 884
SmiMI CAYNNNNRTG 1 cut(s) 1130
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SphI GCATGC 1 cut(s) 879
Sse9I AATT 6 cut(s) 522, 551, 921, 958, 991, 1064
SseBI AGGCCT 2 cut(s) 383, 575
SsiI CCGC 1 cut(s) 393
SspI AATATT 1 cut(s) 723
SspMI CTAG 3 cut(s) 399, 410, 504
StuI AGGCCT 2 cut(s) 383, 575
StyD4I CCNGG 5 cut(s) 37, 154, 264, 628, 756
StyI CCWWGG 1 cut(s) 503
TaiI ACGT 7 cut(s) 181, 253, 282, 718, 786, 897, 969
TaqI TCGA 1 cut(s) 1119
TasI AATT 6 cut(s) 522, 551, 921, 958, 991, 1064
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 1 cut(s) 1013
Tru1I TTAA 2 cut(s) 48, 183
Tru9I TTAA 2 cut(s) 48, 183
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 2 cut(s) 124, 466
TseI GCWGC 3 cut(s) 395, 812, 1088
Tsp45I GTSAC 2 cut(s) 124, 466
TspDTI ATGAA 4 cut(s) 17, 641, 803, 924
TspGWI ACGGA 2 cut(s) 246, 956
TspRI CASTG 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 304
VneI GTGCAC 2 cut(s) 480, 728
VpaK11BI GGWCC 3 cut(s) 35, 515, 884
XagI CCTNNNNNAGG 1 cut(s) 761
XapI RAATTY 3 cut(s) 551, 958, 991
XceI RCATGY 4 cut(s) 590, 853, 879, 1052
XmaJI CCTAGG 1 cut(s) 503
XspI CTAG 3 cut(s) 399, 410, 504
Zsp2I ATGCAT 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.