Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001369

Physical Location & Seq

Genomic Coordinates Forward (+)

24162547 .. 24166350

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g23680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAGATTGTCCGGAAGGACTATATTCCCGGCGGACCCGGCAGCGTTAAGATGATACCGGTAGATTCCGATGATTTGTGGTATGCTTATAATTTGATTGCTCCGGGAGATACAGTCATGGCTGTCACTGTTAGGAAAGTTCTAAGAGAAGCTGCTGGTGGTGGAAGAGATGCAGAGCGCGTGAAGCTGAAGTTAGAAATCAAAGTCGAGGAGGTTGCTGACTTTGACAAAGTAGGAGCTGTCTTGCGTATACGTGGGAAGAATATCCTGGAGAATGAATATGTAAAGATAGGAGCATTTCACACTTTGGAGCTTGAGCTGCACCGACCTTTTGTCTTAAGGAAGGATGTCTGGGACTCATTGGCCTTGCACGAACTCCATCAAGCCTCCGATCCCGGTGCAAGTGCTGATCTAGCTGTGGTTTTAATGCAAGAAGGATTAGCACATATTCTCCTTATTGGTAAAAGTATGACAATTACTCGTTCACGAATAGAAACTTCAATTCCTCGCAAGCACGGACCTGGGATTGCAGGTTATGAGTCGGCTTTGAATAAGTTCTTTGAGAACGTGTTACAGGCATTCTTGAAGCACGTTGATTTCAGTGTTGTTCGCTGTGCTGTGATTGCAAGTCCAGGTTTCACAAAGGATCAGTTTCATCGTCACCTATTATTGGAAGCAGAAAGAAAACAGCTGAGAGCTATTATTGAGAACAAGTCACGGATTATTCTTGTGCACACAAGCTCAGGTTACAAGCATAGCTTAAGGGAGGTTATGGATGCTCCAAATGTTATGAATATGATAAAAGATACTCAAGCGGCGCAAGAGGTTCGAGTTCTCCAAGATTTCTTTGGCATGCTTTCAAATGATCCGGATCGTGCATGCTATGGACCGAAGCATGTTGAAGTTGCTCATCGATCGAATGGCTATCCAAACCCTTTTGATAACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0019222 GO:0019439 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070651 GO:0070966 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

317

Amino Acids

35.34

Weight (kDa)

8.39

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58390 AT4G27650 AT4G27650 AT4G27650
fragaria_vesca	FvH4_4g33100 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g17270
malus_domestica	MD04G1241200.v1.1 MD12G1258200.v1.1
prunus_persica	Prupe.6G358700_v2.0.a1 Prupe.6G358700_v2.0.a1 Prupe.7G122700_v2.0.a1
pyrus_communis	pycom04g21290 pycom12g23680 pycom14g09460
rosa_chinensis	RchiOBHm_Chr3g0448271 RchiOBHm_Chr3g0471381 RchiOBHm_Chr4g0442151
rosa_laevigata	RLG00000006036 RLG00000024182 RLG00000025931
rosa_multiflora	Rmu_sc0006582.1_g000016 Rmu_sc0010284.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383060 Rroxscaffold_6G00410020 Rroxscaffold_6G00426420
rosa_rugosa	Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug03G0117400 Rorug04G0339300
rosa_samantha	Rh3AG009500 Rh3AG167200 Rh3AG167300 Rh3BG009100 Rh3BG192700 Rh3CG009100 Rh3CG183000 Rh3CG183100 Rh3DG009700 Rh3DG182800 Rh3DG182900 Rh4BG404400 Rh4CG419400 Rh4DG397500
rosa_wichuraiana	Rw3G000770 Rw3G015750 Rw4G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	1 cut(s)	180
AccIII	TCCGGA	2 cut(s)	12, 868
AciI	CCGC	2 cut(s)	33, 815
AclWI	GGATC	4 cut(s)	386, 654, 860, 879
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflII	CTTAAG	2 cut(s)	337, 760
AflIII	ACRYGT	1 cut(s)	567
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	5 cut(s)	501, 550, 586, 861, 902
AhdI	GACNNNNNGTC	1 cut(s)	332
AjnI	CCWGG	3 cut(s)	267, 520, 631
Alw21I	GWGCWC	1 cut(s)	735
Alw44I	GTGCAC	1 cut(s)	731
AlwI	GGATC	4 cut(s)	386, 654, 860, 879
Aor13HI	TCCGGA	2 cut(s)	12, 868
AoxI	GGCC	1 cut(s)	363
ApaLI	GTGCAC	1 cut(s)	731
ApeKI	GCWGC	3 cut(s)	42, 152, 319
AsiGI	ACCGGT	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	180, 820
AspS9I	GGNCC	3 cut(s)	35, 518, 887
AsuC2I	CCSGG	4 cut(s)	30, 39, 105, 396
AsuHPI	GGTGA	1 cut(s)	653
AvaII	GGWCC	3 cut(s)	35, 518, 887
BaeGI	GKGCMC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	3 cut(s)	54, 139, 306
BccI	CCATC	1 cut(s)	387
BcgI	CGANNNNNNTGC	6 cut(s)	197, 231, 380, 414, 809, 843
BciT130I	CCWGG	3 cut(s)	269, 522, 633
BcnI	CCSGG	4 cut(s)	30, 39, 105, 396
BfaI	CTAG	1 cut(s)	413
BfrI	CTTAAG	2 cut(s)	337, 760
BfuAI	ACCTGC	1 cut(s)	521
BisI	GCNGC	4 cut(s)	43, 153, 320, 816
BlsI	GCNGC	4 cut(s)	44, 154, 321, 817
Bme1390I	CCNGG	7 cut(s)	30, 39, 105, 269, 396, 522, 633
Bme18I	GGWCC	3 cut(s)	35, 518, 887
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	35, 518, 887
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	7 cut(s)	30, 39, 105, 269, 396, 522, 633
BmsI	GCATC	2 cut(s)	160, 766
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	742
BpuEI	CTTGAG	2 cut(s)	335, 795
BpuMI	CCSGG	4 cut(s)	30, 39, 105, 396
Bsa29I	ATCGAT	1 cut(s)	913
BsaAI	YACGTR	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	1 cut(s)	521
BsaWI	WCCGGW	3 cut(s)	12, 58, 868
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse118I	RCCGGY	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	870
BseAI	TCCGGA	2 cut(s)	12, 868
BseBI	CCWGG	3 cut(s)	269, 522, 633
BseCI	ATCGAT	1 cut(s)	913
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	2 cut(s)	352, 781
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMII	CTCAG	2 cut(s)	683, 756
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	3 cut(s)	54, 139, 306
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	917
BshFI	GGCC	1 cut(s)	365
BshTI	ACCGGT	1 cut(s)	58
BshVI	ATCGAT	1 cut(s)	913
BsiEI	CGRYCG	1 cut(s)	917
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	7 cut(s)	13, 30, 39, 59, 104, 396, 869
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp13I	TCCGGA	2 cut(s)	12, 868
Bsp143I	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
BspACI	CCGC	2 cut(s)	33, 815
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	2 cut(s)	684, 755
BspDI	ATCGAT	1 cut(s)	913
BspEI	TCCGGA	2 cut(s)	12, 868
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	4 cut(s)	386, 654, 860, 879
BspTI	CTTAAG	2 cut(s)	337, 760
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	3 cut(s)	269, 522, 633
Bst4CI	ACNGT	2 cut(s)	115, 130
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	2 cut(s)	337, 760
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	512, 854, 880
BstDEI	CTNAG	3 cut(s)	143, 692, 742
BstF5I	GGATG	2 cut(s)	352, 781
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	180, 820
BstKTI	GATC	6 cut(s)	394, 412, 649, 868, 874, 917
BstMBI	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
BstMCI	CGRYCG	1 cut(s)	917
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 184, 319, 413, 623
BstNI	CCWGG	3 cut(s)	269, 522, 633
BstNSI	RCATGY	3 cut(s)	856, 882, 899
BstSCI	CCNGG	7 cut(s)	28, 37, 103, 267, 394, 520, 631
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	54, 139, 306
BstZ17I	GTATAC	1 cut(s)	251
Bsu15I	ATCGAT	1 cut(s)	913
BsuRI	GGCC	1 cut(s)	365
BsuTUI	ATCGAT	1 cut(s)	913
BtsCI	GGATG	2 cut(s)	352, 781
BtsIMutI	CAGTG	2 cut(s)	126, 607
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	512, 854, 880
CfoI	GCGC	2 cut(s)	180, 820
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	35, 518, 887
ClaI	ATCGAT	1 cut(s)	913
CspAI	ACCGGT	1 cut(s)	58
CviAII	CATG	4 cut(s)	118, 853, 879, 896
DdeI	CTNAG	3 cut(s)	143, 692, 742
DpnI	GATC	6 cut(s)	393, 411, 648, 867, 873, 916
DpnII	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
DriI	GACNNNNNGTC	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	48
Eco47I	GGWCC	3 cut(s)	35, 518, 887
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	3 cut(s)	267, 520, 631
FaeI	CATG	4 cut(s)	121, 856, 882, 899
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	4 cut(s)	117, 852, 878, 895
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	43, 153, 320, 816
FokI	GGATG	2 cut(s)	359, 788
Fsp4HI	GCNGC	4 cut(s)	43, 153, 320, 816
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	2 cut(s)	179, 819
GluI	GCNGC	4 cut(s)	43, 153, 320, 816
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	7 cut(s)	13, 30, 39, 59, 104, 396, 869
HhaI	GCGC	2 cut(s)	180, 820
Hin1II	CATG	4 cut(s)	121, 856, 882, 899
Hin6I	GCGC	2 cut(s)	178, 818
HinP1I	GCGC	2 cut(s)	178, 818
HinfI	GANTC	3 cut(s)	65, 356, 539
HpaII	CCGG	7 cut(s)	13, 30, 39, 59, 104, 396, 869
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	3 cut(s)	251, 485, 733
Hpy188I	TCNGA	2 cut(s)	70, 391
Hpy188III	TCNNGA	4 cut(s)	13, 486, 583, 869
Hpy8I	GTNNAC	3 cut(s)	251, 485, 733
HpyAV	CCTTC	3 cut(s)	10, 337, 428
HpyCH4III	ACNGT	2 cut(s)	115, 130
HpyCH4IV	ACGT	3 cut(s)	253, 567, 591
HpyCH4V	TGCA	9 cut(s)	173, 322, 370, 401, 430, 530, 626, 733, 878
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 184, 319, 413, 623
HpyF3I	CTNAG	3 cut(s)	143, 692, 742
HpySE526I	ACGT	3 cut(s)	253, 567, 591
Hsp92II	CATG	4 cut(s)	121, 856, 882, 899
HspAI	GCGC	2 cut(s)	178, 818
Kpn2I	TCCGGA	2 cut(s)	12, 868
Kzo9I	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
LmnI	GCTCC	5 cut(s)	106, 236, 293, 310, 784
Lsp1109I	GCAGC	3 cut(s)	54, 139, 306
LweI	GCATC	2 cut(s)	160, 766
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	3 cut(s)	253, 567, 591
MaeIII	GTNAC	5 cut(s)	124, 570, 659, 714, 746
MalI	GATC	6 cut(s)	393, 411, 648, 867, 873, 916
MboI	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
MboII	GAAGA	3 cut(s)	16, 177, 271
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	3 cut(s)	91, 474, 501
MlyI	GAGTC	2 cut(s)	350, 548
MnlI	CCTC	6 cut(s)	202, 205, 397, 516, 760, 817
MroI	TCCGGA	2 cut(s)	12, 868
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	4 cut(s)	48, 338, 425, 761
MspA1I	CMGCKG	1 cut(s)	691
MspCI	CTTAAG	2 cut(s)	337, 760
MspI	CCGG	7 cut(s)	13, 30, 39, 59, 104, 396, 869
MspR9I	CCNGG	7 cut(s)	30, 39, 105, 269, 396, 522, 633
Mva1269I	GAATGC	1 cut(s)	578
MvaI	CCWGG	3 cut(s)	269, 522, 633
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	39, 184, 319, 413, 623
NciI	CCSGG	4 cut(s)	30, 39, 105, 396
NdeII	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
NlaIII	CATG	4 cut(s)	121, 856, 882, 899
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	3 cut(s)	124, 659, 714
NspI	RCATGY	3 cut(s)	856, 882, 899
PaeI	GCATGC	2 cut(s)	856, 882
PctI	GAATGC	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	65
PfoI	TCCNGGA	2 cut(s)	103, 267
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	44, 154, 321, 817
Ple19I	CGATCG	1 cut(s)	917
PleI	GAGTC	2 cut(s)	350, 547
PpsI	GAGTC	2 cut(s)	350, 547
Ppu21I	YACGTR	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	267, 520, 631
PspGI	CCWGG	3 cut(s)	267, 520, 631
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	3 cut(s)	35, 518, 887
PvuI	CGATCG	1 cut(s)	917
PvuII	CAGCTG	1 cut(s)	691
SaqAI	TTAA	4 cut(s)	48, 338, 425, 761
SatI	GCNGC	4 cut(s)	43, 153, 320, 816
Sau3AI	GATC	6 cut(s)	391, 409, 646, 865, 871, 914
Sau96I	GGNCC	3 cut(s)	35, 518, 887
SchI	GAGTC	2 cut(s)	350, 548
ScrFI	CCNGG	7 cut(s)	30, 39, 105, 269, 396, 522, 633
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	2 cut(s)	160, 766
SinI	GGWCC	3 cut(s)	35, 518, 887
SmlI	CTYRAG	4 cut(s)	314, 337, 760, 810
SmoI	CTYRAG	4 cut(s)	314, 337, 760, 810
SphI	GCATGC	2 cut(s)	856, 882
Sse9I	AATT	3 cut(s)	91, 474, 501
SsiI	CCGC	2 cut(s)	33, 815
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	7 cut(s)	28, 37, 103, 267, 394, 520, 631
TaaI	ACNGT	2 cut(s)	115, 130
TaiI	ACGT	3 cut(s)	256, 570, 594
TaqI	TCGA	4 cut(s)	207, 829, 913, 917
TaqII	GACCGA	1 cut(s)	904
TasI	AATT	3 cut(s)	91, 474, 501
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	4 cut(s)	48, 338, 425, 761
Tru9I	TTAA	4 cut(s)	48, 338, 425, 761
TscAI	CASTG	2 cut(s)	133, 607
TseFI	GTSAC	3 cut(s)	124, 659, 714
TseI	GCWGC	3 cut(s)	42, 152, 319
Tsp45I	GTSAC	3 cut(s)	124, 659, 714
TspDTI	ATGAA	4 cut(s)	17, 291, 644, 806
TspGWI	ACGGA	2 cut(s)	531, 733
TspRI	CASTG	2 cut(s)	133, 607
Vha464I	CTTAAG	2 cut(s)	337, 760
VneI	GTGCAC	1 cut(s)	731
VpaK11BI	GGWCC	3 cut(s)	35, 518, 887
XceI	RCATGY	3 cut(s)	856, 882, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.