May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| eRF1_3 | PF03465 | 55 - 134 | 4.6e-10 | eRF1 domain 3 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 8 |
| AfaI | GTAC | 2 cut(s) | 130, 335 |
| AgsI | TTSAA | 3 cut(s) | 25, 265, 275 |
| AluBI | AGCT | 1 cut(s) | 408 |
| AluI | AGCT | 1 cut(s) | 408 |
| Alw26I | GTCTC | 2 cut(s) | 144, 314 |
| AoxI | GGCC | 1 cut(s) | 267 |
| AspLEI | GCGC | 1 cut(s) | 256 |
| AspS9I | GGNCC | 1 cut(s) | 217 |
| AvaII | GGWCC | 1 cut(s) | 217 |
| BauI | CACGAG | 1 cut(s) | 73 |
| BccI | CCATC | 2 cut(s) | 160, 244 |
| BcoDI | GTCTC | 2 cut(s) | 144, 314 |
| BfaI | CTAG | 1 cut(s) | 409 |
| Bme18I | GGWCC | 1 cut(s) | 217 |
| BmgT120I | GGNCC | 1 cut(s) | 217 |
| BpuEI | CTTGAG | 1 cut(s) | 131 |
| BsaBI | GATNNNNATC | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 1 cut(s) | 156 |
| Bse8I | GATNNNNATC | 1 cut(s) | 170 |
| BseDI | CCNNGG | 1 cut(s) | 156 |
| BseJI | GATNNNNATC | 1 cut(s) | 170 |
| BseRI | GAGGAG | 1 cut(s) | 91 |
| BshFI | GGCC | 1 cut(s) | 269 |
| BsmAI | GTCTC | 2 cut(s) | 144, 314 |
| BsmBI | CGTCTC | 1 cut(s) | 314 |
| BsnI | GGCC | 1 cut(s) | 269 |
| Bsp143I | GATC | 1 cut(s) | 171 |
| BspACI | CCGC | 1 cut(s) | 8 |
| BspANI | GGCC | 1 cut(s) | 269 |
| BssECI | CCNNGG | 1 cut(s) | 156 |
| BssMI | GATC | 1 cut(s) | 171 |
| BssSI | CACGAG | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 1 cut(s) | 156 |
| Bst2BI | CACGAG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 3 cut(s) | 101, 128, 133 |
| BstHHI | GCGC | 1 cut(s) | 256 |
| BstKTI | GATC | 1 cut(s) | 174 |
| BstMAI | GTCTC | 2 cut(s) | 144, 314 |
| BstMBI | GATC | 1 cut(s) | 171 |
| BstNSI | RCATGY | 1 cut(s) | 401 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 244 |
| BsuRI | GGCC | 1 cut(s) | 269 |
| CfoI | GCGC | 1 cut(s) | 256 |
| Cfr13I | GGNCC | 1 cut(s) | 217 |
| Csp6I | GTAC | 2 cut(s) | 129, 334 |
| CviAII | CATG | 3 cut(s) | 122, 257, 398 |
| CviJI | RGCY | 4 cut(s) | 161, 179, 269, 408 |
| CviKI_1 | RGCY | 4 cut(s) | 161, 179, 269, 408 |
| CviQI | GTAC | 2 cut(s) | 129, 334 |
| DpnI | GATC | 1 cut(s) | 173 |
| DpnII | GATC | 1 cut(s) | 171 |
| Eco130I | CCWWGG | 1 cut(s) | 156 |
| Eco47I | GGWCC | 1 cut(s) | 217 |
| EcoT14I | CCWWGG | 1 cut(s) | 156 |
| ErhI | CCWWGG | 1 cut(s) | 156 |
| Esp3I | CGTCTC | 1 cut(s) | 314 |
| FaeI | CATG | 3 cut(s) | 125, 260, 401 |
| FaiI | YATR | 6 cut(s) | 123, 231, 258, 303, 330, 399 |
| FatI | CATG | 3 cut(s) | 121, 256, 397 |
| FspBI | CTAG | 1 cut(s) | 409 |
| GlaI | GCGC | 1 cut(s) | 255 |
| HaeIII | GGCC | 1 cut(s) | 269 |
| HhaI | GCGC | 1 cut(s) | 256 |
| Hin1II | CATG | 3 cut(s) | 125, 260, 401 |
| Hin6I | GCGC | 1 cut(s) | 254 |
| HinP1I | GCGC | 1 cut(s) | 254 |
| HinfI | GANTC | 1 cut(s) | 350 |
| Hpy188I | TCNGA | 4 cut(s) | 149, 196, 355, 394 |
| HpyAV | CCTTC | 3 cut(s) | 19, 259, 367 |
| HpyCH4III | ACNGT | 3 cut(s) | 101, 128, 133 |
| HpyCH4V | TGCA | 1 cut(s) | 121 |
| Hsp92II | CATG | 3 cut(s) | 125, 260, 401 |
| HspAI | GCGC | 1 cut(s) | 254 |
| Kzo9I | GATC | 1 cut(s) | 171 |
| LmnI | GCTCC | 1 cut(s) | 78 |
| LpnPI | CCDG | 1 cut(s) | 351 |
| MaeI | CTAG | 1 cut(s) | 409 |
| MalI | GATC | 1 cut(s) | 173 |
| MboI | GATC | 1 cut(s) | 171 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| MmeI | TCCRAC | 1 cut(s) | 333 |
| MnlI | CCTC | 6 cut(s) | 4, 69, 106, 318, 332, 362 |
| MseI | TTAA | 2 cut(s) | 69, 183 |
| NdeII | GATC | 1 cut(s) | 171 |
| NlaIII | CATG | 3 cut(s) | 125, 260, 401 |
| NspI | RCATGY | 1 cut(s) | 401 |
| PleI | GAGTC | 1 cut(s) | 358 |
| PpsI | GAGTC | 1 cut(s) | 358 |
| PspPI | GGNCC | 1 cut(s) | 217 |
| RsaI | GTAC | 2 cut(s) | 130, 335 |
| RsaNI | GTAC | 2 cut(s) | 129, 334 |
| SaqAI | TTAA | 2 cut(s) | 69, 183 |
| Sau3AI | GATC | 1 cut(s) | 171 |
| Sau96I | GGNCC | 1 cut(s) | 217 |
| SchI | GAGTC | 1 cut(s) | 359 |
| SetI | ASST | 5 cut(s) | 23, 30, 117, 329, 410 |
| SinI | GGWCC | 1 cut(s) | 217 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| SsiI | CCGC | 1 cut(s) | 8 |
| SspMI | CTAG | 1 cut(s) | 409 |
| StyI | CCWWGG | 1 cut(s) | 156 |
| TaaI | ACNGT | 3 cut(s) | 101, 128, 133 |
| TaqII | GACCGA | 1 cut(s) | 234 |
| TatI | WGTACW | 1 cut(s) | 333 |
| Tru1I | TTAA | 2 cut(s) | 69, 183 |
| Tru9I | TTAA | 2 cut(s) | 69, 183 |
| TspDTI | ATGAA | 1 cut(s) | 152 |
| TspGWI | ACGGA | 1 cut(s) | 224 |
| VpaK11BI | GGWCC | 1 cut(s) | 217 |
| XceI | RCATGY | 1 cut(s) | 401 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 163 |
| XspI | CTAG | 1 cut(s) | 409 |