Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001369

Physical Location & Seq

Genomic Coordinates Reverse (-)

462165 .. 468222

Gene Structure 6058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00790.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAGATTGTTCACAGGGACTTCGTTCGCGGCGGACCCGGCAAAGTTAAGATGGTGCCGCTCGATTCCGATGATCTGTGGTATGTTTTCAACTTGATAGCTGTTGGCGATAGTGTTATTTCTGTCACTGTCAGGAAAGTTTTAAGAGAAGCGGCTAGCGGTGGGAGAGATGCAGAGCGTGTGAAGCTCAAGTTGGAAATAAAAGTTGACAAGGTTCCTGAGTATGATCAAGAAGGCGGTGTCGTGCGTGTAAGCGGAAAGAATATCCTTGAAAATGAACATGTGAAGATAGGAGCACATCATACTCTGGAACTTGAGCTTCACCGGCCTTTTATTTTAAAAAAGGATGTGTGGGACTCAGTGGCCTTGCTTGAACTCAATCAAGCCTGTGATCCTGCGGCAAGTGCTGACCTAGCTGTTGTAATAATGCAAGAAGGATTAGCACATATTCTCCTTGTTGGTAGAAGTATGACAATAACTCGGTCACGGATAGAAACTTCAATTCCACGCAAGCATGGACCTTCAGTTGCAGGTTATGAGAAAGCTTTGAGCAAGTTCTTTGAAAATGTGTTACAGGCTTTCTTGAAGTATGTTGATTTCAGTGTTGTTCGCTGCGCTGTGATTGCAAGTCCAGGTTTCACAAAGGATCAGTTTCATCGTCACTTATTGTTGGAAGCAGAGAGAAAACAGCTGAGGCCTATCATTGAGAACAAGTCACGGATAGTTCTTGTGCATACAACCTCGGGTTACAAGCATAGTTTGAAAGAGGTCCTGGATGCTCCAAATGTTATGAATCTGATAAAAGATACTAAAGCAGCACAAGAGGTCCGGGCTCTCCAAGATTTCTTCAGTATGCTTTCAAATGAGCCACATCGTGCATGCTATGGACCAAAACATGTTGAGGTTGCTCATGAACAAATGGCTGTGCAAACCCTTTTGATAACAGATGAGCTGTTCAGGAATGCTGATGTAGTAACGAGGCAAAAGTATGTCAATTTGGTGAACTCAGTGAAGGATTCGAAGGGAAATGTTCACATATTTTCTTCTATGCACGTTTCAGGAGAACAACTGGCACAAATAACTGGCATTGCTGCAATTCTTCGTTTCCCTCTACCAGACCTGGATGATATAGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0019222 GO:0019439 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070651 GO:0070966 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

380

Amino Acids

42.44

Weight (kDa)

7.8

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pelota_N	PF26356	1 - 130	3.4e-39	Pelota N-terminal domain
eRF1_2	PF03464	138 - 272	9.6e-27	eRF1 domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58390 AT4G27650 AT4G27650 AT4G27650
fragaria_vesca	FvH4_4g33100 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g17270
malus_domestica	MD04G1241200.v1.1 MD12G1258200.v1.1
prunus_persica	Prupe.6G358700_v2.0.a1 Prupe.6G358700_v2.0.a1 Prupe.7G122700_v2.0.a1
pyrus_communis	pycom04g21290 pycom12g23680 pycom14g09460
rosa_chinensis	RchiOBHm_Chr3g0448271 RchiOBHm_Chr3g0471381 RchiOBHm_Chr4g0442151
rosa_laevigata	RLG00000006036 RLG00000024182 RLG00000025931
rosa_multiflora	Rmu_sc0006582.1_g000016 Rmu_sc0010284.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383060 Rroxscaffold_6G00410020 Rroxscaffold_6G00426420
rosa_rugosa	Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug03G0117400 Rorug04G0339300
rosa_samantha	Rh3AG009500 Rh3AG167200 Rh3AG167300 Rh3BG009100 Rh3BG192700 Rh3CG009100 Rh3CG183000 Rh3CG183100 Rh3DG009700 Rh3DG182800 Rh3DG182900 Rh4BG404400 Rh4CG419400 Rh4DG397500
rosa_wichuraiana	Rw3G000770 Rw3G015750 Rw4G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	61
AccII	CGCG	1 cut(s)	30
AciI	CCGC	8 cut(s)	30, 33, 59, 152, 159, 237, 255, 398
AclWI	GGATC	2 cut(s)	386, 654
AcuI	CTGAAG	2 cut(s)	507, 832
AdeI	CACNNNGTG	1 cut(s)	875
AflIII	ACRYGT	2 cut(s)	280, 895
AgsI	TTSAA	8 cut(s)	91, 272, 374, 501, 563, 586, 763, 861
AjnI	CCWGG	3 cut(s)	631, 771, 1119
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	7 cut(s)	101, 187, 319, 416, 545, 691, 952
AluI	AGCT	7 cut(s)	101, 187, 319, 416, 545, 691, 952
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	386, 654
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	3 cut(s)	326, 363, 695
ApeKI	GCWGC	3 cut(s)	612, 815, 1091
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	5 cut(s)	35, 518, 769, 826, 887
AsuC2I	CCSGG	2 cut(s)	39, 830
AsuHPI	GGTGA	2 cut(s)	314, 1012
AsuII	TTCGAA	1 cut(s)	1019
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	742
AvaII	GGWCC	5 cut(s)	35, 518, 769, 826, 887
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	835
Bbv12I	GWGCWC	1 cut(s)	298
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	3 cut(s)	599, 827, 1078
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	3 cut(s)	633, 773, 1121
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	39, 830
BfaI	CTAG	2 cut(s)	156, 413
BfuAI	ACCTGC	1 cut(s)	521
BisI	GCNGC	7 cut(s)	31, 59, 153, 399, 613, 816, 1092
BlsI	GCNGC	7 cut(s)	32, 60, 154, 400, 614, 817, 1093
Bme1390I	CCNGG	5 cut(s)	39, 633, 773, 830, 1121
Bme18I	GGWCC	5 cut(s)	35, 518, 769, 826, 887
BmeT110I	CYCGRG	1 cut(s)	742
BmgT120I	GGNCC	5 cut(s)	35, 518, 769, 826, 887
BmiI	GGNNCC	3 cut(s)	37, 57, 216
BmrFI	CCNGG	5 cut(s)	39, 633, 773, 830, 1121
BmsI	GCATC	2 cut(s)	160, 766
BmtI	GCTAGC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	1019
BpuEI	CTTGAG	2 cut(s)	173, 335
BpuMI	CCSGG	2 cut(s)	39, 830
BsaJI	CCNNGG	1 cut(s)	741
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	2 cut(s)	1074, 1087
Bse3DI	GCAATG	1 cut(s)	1086
BseBI	CCWGG	3 cut(s)	633, 773, 1121
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	352, 781, 1129
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	4 cut(s)	210, 372, 683, 1020
BseNI	ACTGG	2 cut(s)	1074, 1087
BseXI	GCAGC	3 cut(s)	599, 827, 1078
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	3 cut(s)	328, 365, 697
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	3 cut(s)	39, 325, 829
BslFI	GGGAC	2 cut(s)	32, 368
BsmFI	GGGAC	2 cut(s)	32, 368
BsmI	GAATGC	1 cut(s)	967
BsnI	GGCC	3 cut(s)	328, 365, 697
BsoBI	CYCGRG	1 cut(s)	742
Bsp119I	TTCGAA	1 cut(s)	1019
Bsp1286I	GDGCHC	2 cut(s)	298, 835
Bsp143I	GATC	4 cut(s)	73, 226, 391, 646
BspACI	CCGC	8 cut(s)	30, 33, 59, 152, 159, 237, 255, 398
BspANI	GGCC	3 cut(s)	328, 365, 697
BspCNI	CTCAG	4 cut(s)	211, 371, 684, 1019
BspFNI	CGCG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	3 cut(s)	37, 57, 216
BspMI	ACCTGC	1 cut(s)	521
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	386, 654
BspT104I	TTCGAA	1 cut(s)	1019
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	1086
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	1074, 1087
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	4 cut(s)	73, 226, 391, 646
Bst2UI	CCWGG	3 cut(s)	633, 773, 1121
Bst4CI	ACNGT	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	157, 512, 880
BstDEI	CTNAG	4 cut(s)	219, 358, 692, 1006
BstF5I	GGATG	3 cut(s)	352, 781, 1129
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	4 cut(s)	76, 229, 394, 649
BstMBI	GATC	4 cut(s)	73, 226, 391, 646
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 184, 325, 404, 413, 623
BstNI	CCWGG	3 cut(s)	633, 773, 1121
BstNSI	RCATGY	3 cut(s)	284, 882, 899
BstSCI	CCNGG	5 cut(s)	37, 631, 771, 828, 1119
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	599, 827, 1078
BsuRI	GGCC	3 cut(s)	328, 365, 697
BtsCI	GGATG	3 cut(s)	352, 781, 1129
BtsIMutI	CAGTG	4 cut(s)	126, 366, 607, 1014
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	157, 512, 880
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	1 cut(s)	617
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	5 cut(s)	35, 518, 769, 826, 887
CviAII	CATG	5 cut(s)	281, 515, 879, 896, 911
DdeI	CTNAG	4 cut(s)	219, 358, 692, 1006
DpnI	GATC	4 cut(s)	75, 228, 393, 648
DpnII	GATC	4 cut(s)	73, 226, 391, 646
DraI	TTTAAA	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	875
EciI	GGCGGA	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	835
Eco47I	GGWCC	5 cut(s)	35, 518, 769, 826, 887
Eco57I	CTGAAG	2 cut(s)	507, 832
Eco88I	CYCGRG	1 cut(s)	742
EcoO109I	RGGNCCY	1 cut(s)	769
EcoRII	CCWGG	3 cut(s)	631, 771, 1119
EcoT38I	GRGCYC	1 cut(s)	835
FaeI	CATG	5 cut(s)	284, 518, 882, 899, 914
FaqI	GGGAC	2 cut(s)	32, 368
FatI	CATG	5 cut(s)	280, 514, 878, 895, 910
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	7 cut(s)	31, 59, 153, 399, 613, 816, 1092
FokI	GGATG	3 cut(s)	359, 788, 1136
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	7 cut(s)	31, 59, 153, 399, 613, 816, 1092
FspBI	CTAG	2 cut(s)	156, 413
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	7 cut(s)	31, 59, 153, 399, 613, 816, 1092
HaeIII	GGCC	3 cut(s)	328, 365, 697
HapII	CCGG	3 cut(s)	39, 325, 829
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	5 cut(s)	284, 518, 882, 899, 914
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	4 cut(s)	65, 356, 793, 1016
HpaII	CCGG	3 cut(s)	39, 325, 829
HphI	GGTGA	2 cut(s)	314, 1012
Hpy166II	GTNNAC	4 cut(s)	13, 208, 1003, 1033
Hpy188I	TCNGA	2 cut(s)	70, 798
Hpy188III	TCNNGA	8 cut(s)	133, 218, 230, 308, 583, 911, 958, 1059
Hpy8I	GTNNAC	4 cut(s)	13, 208, 1003, 1033
HpyAV	CCTTC	5 cut(s)	227, 428, 531, 1006, 1015
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	1053
HpyCH4V	TGCA	9 cut(s)	173, 430, 530, 626, 733, 878, 928, 1051, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 184, 325, 404, 413, 623
HpyF3I	CTNAG	4 cut(s)	219, 358, 692, 1006
HpySE526I	ACGT	1 cut(s)	1053
Hsp92II	CATG	5 cut(s)	284, 518, 882, 899, 914
HspAI	GCGC	1 cut(s)	615
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	73, 226, 391, 646
LmnI	GCTCC	2 cut(s)	293, 784
Lsp1109I	GCAGC	3 cut(s)	599, 827, 1078
LweI	GCATC	2 cut(s)	160, 766
MaeI	CTAG	2 cut(s)	156, 413
MaeII	ACGT	1 cut(s)	1053
MaeIII	GTNAC	7 cut(s)	124, 483, 570, 659, 714, 746, 973
MalI	GATC	4 cut(s)	75, 228, 393, 648
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	4 cut(s)	73, 226, 391, 646
MboII	GAAGA	5 cut(s)	16, 298, 838, 1035, 1091
MhlI	GDGCHC	2 cut(s)	298, 835
MluCI	AATT	3 cut(s)	501, 994, 1095
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	174, 651
MnlI	CCTC	7 cut(s)	687, 751, 760, 817, 895, 972, 1119
MseI	TTAA	3 cut(s)	48, 143, 338
MspA1I	CMGCKG	1 cut(s)	691
MspI	CCGG	3 cut(s)	39, 325, 829
MspR9I	CCNGG	5 cut(s)	39, 633, 773, 830, 1121
Mva1269I	GAATGC	1 cut(s)	967
MvaI	CCWGG	3 cut(s)	633, 773, 1121
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	6 cut(s)	39, 184, 325, 404, 413, 623
NciI	CCSGG	2 cut(s)	39, 830
NdeII	GATC	4 cut(s)	73, 226, 391, 646
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	284, 518, 882, 899, 914
NlaIV	GGNNCC	3 cut(s)	37, 57, 216
NmuCI	GTSAC	4 cut(s)	124, 483, 659, 714
NspI	RCATGY	3 cut(s)	284, 882, 899
NspV	TTCGAA	1 cut(s)	1019
PaeI	GCATGC	1 cut(s)	882
PagI	TCATGA	1 cut(s)	910
PceI	AGGCCT	1 cut(s)	697
PciI	ACATGT	2 cut(s)	280, 895
PctI	GAATGC	1 cut(s)	967
PfeI	GAWTC	3 cut(s)	65, 793, 1016
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	7 cut(s)	32, 60, 154, 400, 614, 817, 1093
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	769
PscI	ACATGT	2 cut(s)	280, 895
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	3 cut(s)	631, 771, 1119
PspGI	CCWGG	3 cut(s)	631, 771, 1119
PspN4I	GGNNCC	3 cut(s)	37, 57, 216
PspPI	GGNCC	5 cut(s)	35, 518, 769, 826, 887
PspPPI	RGGWCCY	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	691
SaqAI	TTAA	3 cut(s)	48, 143, 338
SatI	GCNGC	7 cut(s)	31, 59, 153, 399, 613, 816, 1092
Sau3AI	GATC	4 cut(s)	73, 226, 391, 646
Sau96I	GGNCC	5 cut(s)	35, 518, 769, 826, 887
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	5 cut(s)	39, 633, 773, 830, 1121
SduI	GDGCHC	2 cut(s)	298, 835
SfaNI	GCATC	2 cut(s)	160, 766
SfuI	TTCGAA	1 cut(s)	1019
SinI	GGWCC	5 cut(s)	35, 518, 769, 826, 887
SmlI	CTYRAG	2 cut(s)	188, 314
SmoI	CTYRAG	2 cut(s)	188, 314
SphI	GCATGC	1 cut(s)	882
Sse9I	AATT	3 cut(s)	501, 994, 1095
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	8 cut(s)	30, 33, 59, 152, 159, 237, 255, 398
SspMI	CTAG	2 cut(s)	156, 413
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	5 cut(s)	37, 631, 771, 828, 1119
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	1056
TaqI	TCGA	2 cut(s)	63, 1019
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	501, 994, 1095
TauI	GCSGC	4 cut(s)	33, 61, 155, 401
TfiI	GAWTC	3 cut(s)	65, 793, 1016
Tru1I	TTAA	3 cut(s)	48, 143, 338
Tru9I	TTAA	3 cut(s)	48, 143, 338
TscAI	CASTG	4 cut(s)	133, 366, 607, 1014
TseFI	GTSAC	4 cut(s)	124, 483, 659, 714
TseI	GCWGC	3 cut(s)	612, 815, 1091
Tsp45I	GTSAC	4 cut(s)	124, 483, 659, 714
TspDTI	ATGAA	5 cut(s)	17, 291, 644, 806, 927
TspGWI	ACGGA	2 cut(s)	502, 733
TspRI	CASTG	4 cut(s)	133, 366, 607, 1014
VpaK11BI	GGWCC	5 cut(s)	35, 518, 769, 826, 887
XceI	RCATGY	3 cut(s)	284, 882, 899
XspI	CTAG	2 cut(s)	156, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.