Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001369

Physical Location & Seq

Genomic Coordinates Reverse (-)

587193 .. 593362

Gene Structure 6170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAAGATTGTTCACCAGGATTTCGTTCCAGGCGGACCCGGCAAAGTCAAGATGGTGCCGGCTGATTCCGATGATCTGTGGTATGTGTACAATTTGATAGCTCCTGGAGATAGTGTTATTGCTGTCACTGTGAGGAAAGTTCTAAGAGAAGGGGCTAGCGGTGGAAGAGATGCAGAGCGTGTGAAGCTGAAGTTAGAAATAAAAGTTGAGGAGGTTGCTGATTATGATAAAGTAGGCAATGTCTTGCGTATACGTGGAAAGAATATTCTTGAGAATGAACATGTAAAGATAGGAGCATATCATACTCTGGAACTTGAGCCTCACCGACCTTTTGTTTTAAAAAAGGATGTGTGGGACTCACTGGCCTTGCACGAACTCAATCAAGCCGTGGTATATCCTGCGGCGAGTGCTGACCTAGCTGTGGTAATAATGCAAGAAGGATTAGCACATATTCTCCTTGTTGGAAGAAGTATGACAATAACTCGGTCACGAATAGAAACTTCAATTCCTCGCAAGCATGGACCTTCAGTTGCAGGTTATGAGAAAGCTTTGAGCAAGTTCTTTGAAAATGTGTTACAGGCTTTCTTGAAGAATGTTGATTTCAGTGTTGTTCGCTGTGCTGTGATTGCAAGTCCAGGTTTCACAAAGGATCAGTTTCATCGTCACTTATTGTTGGAAGCAGAGAGAAAACAGCTGAGGCCTATCATTGAGAACAAGTCACGGATTCTTCTTGTGCATACAACCTCGGGTTACAAGCATAGTTTGAGGGAGGTTCTGGATGCTCCAAATGTTATGAATATGATAAAAGATACTAAAGCAGCACAAGAGGTCCGGGCGCTCCAAGATTTCTTCAGTATGCTTTCAAATGAGCCACATCGTGCATGCTATGGACCAAAGCATGTTGAGGTTGCTCATGAACAAATGGCCGTGCAAACCCTTTTGATAACAGATGAGCTGTTCAGTAACGAGGCAAAATATGTCAATTTGGTGAACTCAGTGAAGAATTCAGGCGGCAATGTTCATATATTTTCTTCTATGCACGTTTCAGGAGAACAATTGGCACAAATAACTGGCATTGCTGCAATTCTTCGTTTCCCTCTACCAGACCTGGATGATATAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0019222 GO:0019439 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070651 GO:0070966 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

375

Amino Acids

41.87

Weight (kDa)

6.98

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pelota_N	PF26356	1 - 130	1.5e-41	Pelota N-terminal domain
eRF1_2	PF03464	139 - 270	2e-29	eRF1 domain 2
eRF1_3	PF03465	274 - 367	7.4e-27	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58390 AT4G27650 AT4G27650 AT4G27650
fragaria_vesca	FvH4_4g33100 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g17270
malus_domestica	MD04G1241200.v1.1 MD12G1258200.v1.1
prunus_persica	Prupe.6G358700_v2.0.a1 Prupe.6G358700_v2.0.a1 Prupe.7G122700_v2.0.a1
pyrus_communis	pycom04g21290 pycom12g23680 pycom14g09460
rosa_chinensis	RchiOBHm_Chr3g0448271 RchiOBHm_Chr3g0471381 RchiOBHm_Chr4g0442151
rosa_laevigata	RLG00000006036 RLG00000024182 RLG00000025931
rosa_multiflora	Rmu_sc0006582.1_g000016 Rmu_sc0010284.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383060 Rroxscaffold_6G00410020 Rroxscaffold_6G00426420
rosa_rugosa	Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug03G0117400 Rorug04G0339300
rosa_samantha	Rh3AG009500 Rh3AG167200 Rh3AG167300 Rh3BG009100 Rh3BG192700 Rh3CG009100 Rh3CG183000 Rh3CG183100 Rh3DG009700 Rh3DG182800 Rh3DG182900 Rh4BG404400 Rh4CG419400 Rh4DG397500
rosa_wichuraiana	Rw3G000770 Rw3G015750 Rw4G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	524
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	4 cut(s)	33, 159, 401, 1011
AclWI	GGATC	1 cut(s)	657
AcoI	YGGCCR	1 cut(s)	924
AcsI	RAATTY	1 cut(s)	1003
AcuI	CTGAAG	3 cut(s)	209, 510, 835
AdeI	CACNNNGTG	1 cut(s)	878
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	504, 566, 589, 864
AjnI	CCWGG	5 cut(s)	15, 28, 103, 634, 1107
AluBI	AGCT	6 cut(s)	101, 187, 419, 548, 694, 955
AluI	AGCT	6 cut(s)	101, 187, 419, 548, 694, 955
AlwI	GGATC	1 cut(s)	657
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	3 cut(s)	363, 698, 924
ApeKI	GCWGC	2 cut(s)	818, 1079
ApoI	RAATTY	1 cut(s)	1003
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	4 cut(s)	35, 521, 829, 890
AsuC2I	CCSGG	2 cut(s)	39, 833
AsuHPI	GGTGA	3 cut(s)	5, 314, 1000
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	4 cut(s)	35, 521, 829, 890
BanI	GGYRCC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	2 cut(s)	830, 1066
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	371, 911
BciT130I	CCWGG	5 cut(s)	17, 30, 105, 636, 1109
BcnI	CCSGG	2 cut(s)	39, 833
BfaI	CTAG	2 cut(s)	156, 416
BfoI	RGCGCY	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	524
BisI	GCNGC	4 cut(s)	402, 819, 1012, 1080
BlsI	GCNGC	4 cut(s)	403, 820, 1013, 1081
Bme1390I	CCNGG	7 cut(s)	17, 30, 39, 105, 636, 833, 1109
Bme18I	GGWCC	4 cut(s)	35, 521, 829, 890
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	4 cut(s)	35, 521, 829, 890
BmiI	GGNNCC	2 cut(s)	37, 57
BmrFI	CCNGG	7 cut(s)	17, 30, 39, 105, 636, 833, 1109
BmsI	GCATC	2 cut(s)	160, 769
BmtI	GCTAGC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	2 cut(s)	290, 335
BpuMI	CCSGG	2 cut(s)	39, 833
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	387, 744
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	366, 1075
Bse3DI	GCAATG	3 cut(s)	244, 1021, 1074
BseBI	CCWGG	5 cut(s)	17, 30, 105, 636, 1109
BseDI	CCNNGG	2 cut(s)	387, 744
BseGI	GGATG	3 cut(s)	352, 784, 1117
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	3 cut(s)	244, 1021, 1074
BseMII	CTCAG	2 cut(s)	686, 1008
BseNI	ACTGG	2 cut(s)	366, 1075
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	830, 1066
BshFI	GGCC	3 cut(s)	365, 700, 926
BshNI	GGYRCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	3 cut(s)	39, 59, 832
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	365, 700, 926
BsoBI	CYCGRG	1 cut(s)	745
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	73, 649
BspACI	CCGC	4 cut(s)	33, 159, 401, 1011
BspANI	GGCC	3 cut(s)	365, 700, 926
BspCNI	CTCAG	2 cut(s)	687, 1007
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	2 cut(s)	37, 57
BspMI	ACCTGC	1 cut(s)	524
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	3 cut(s)	244, 1021, 1074
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	366, 1075
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	387, 744
BssMI	GATC	2 cut(s)	73, 649
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	5 cut(s)	17, 30, 105, 636, 1109
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	60, 157, 515, 883
BstDEI	CTNAG	3 cut(s)	143, 695, 994
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	3 cut(s)	352, 784, 1117
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	2 cut(s)	76, 652
BstMBI	GATC	2 cut(s)	73, 649
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 184, 407, 416, 626
BstNI	CCWGG	5 cut(s)	17, 30, 105, 636, 1109
BstNSI	RCATGY	3 cut(s)	284, 885, 902
BstSCI	CCNGG	7 cut(s)	15, 28, 37, 103, 634, 831, 1107
BstV1I	GCAGC	2 cut(s)	830, 1066
BstZ17I	GTATAC	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	365, 700, 926
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	3 cut(s)	352, 784, 1117
BtsIMutI	CAGTG	4 cut(s)	126, 359, 610, 1002
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	4 cut(s)	60, 157, 515, 883
CciI	TCATGA	1 cut(s)	913
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	4 cut(s)	35, 521, 829, 890
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	5 cut(s)	281, 518, 882, 899, 914
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	3 cut(s)	143, 695, 994
DpnI	GATC	2 cut(s)	75, 651
DpnII	GATC	2 cut(s)	73, 649
DraI	TTTAAA	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	878
EaeI	YGGCCR	1 cut(s)	924
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	700
Eco47I	GGWCC	4 cut(s)	35, 521, 829, 890
Eco57I	CTGAAG	3 cut(s)	209, 510, 835
Eco88I	CYCGRG	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	5 cut(s)	15, 28, 103, 634, 1107
FaeI	CATG	5 cut(s)	284, 521, 885, 902, 917
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	5 cut(s)	280, 517, 881, 898, 913
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	402, 819, 1012, 1080
FokI	GGATG	3 cut(s)	359, 791, 1124
Fsp4HI	GCNGC	4 cut(s)	402, 819, 1012, 1080
FspBI	CTAG	2 cut(s)	156, 416
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	4 cut(s)	402, 819, 1012, 1080
GsuI	CTGGAG	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	839
HaeIII	GGCC	3 cut(s)	365, 700, 926
HapII	CCGG	3 cut(s)	39, 59, 832
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	5 cut(s)	284, 521, 885, 902, 917
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	3 cut(s)	65, 356, 724
HpaII	CCGG	3 cut(s)	39, 59, 832
HphI	GGTGA	3 cut(s)	5, 314, 1000
Hpy166II	GTNNAC	4 cut(s)	13, 88, 251, 991
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	8 cut(s)	49, 269, 308, 489, 586, 776, 914, 1047
Hpy8I	GTNNAC	4 cut(s)	13, 88, 251, 991
HpyAV	CCTTC	3 cut(s)	143, 431, 534
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	253, 1041
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 184, 407, 416, 626
HpyF3I	CTNAG	3 cut(s)	143, 695, 994
HpySE526I	ACGT	2 cut(s)	253, 1041
Hsp92II	CATG	5 cut(s)	284, 521, 885, 902, 917
HspAI	GCGC	1 cut(s)	836
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	73, 649
LmnI	GCTCC	4 cut(s)	106, 293, 787, 843
Lsp1109I	GCAGC	2 cut(s)	830, 1066
LweI	GCATC	2 cut(s)	160, 769
MaeI	CTAG	2 cut(s)	156, 416
MaeII	ACGT	2 cut(s)	253, 1041
MaeIII	GTNAC	7 cut(s)	124, 486, 573, 662, 717, 749, 962
MalI	GATC	2 cut(s)	75, 651
MboI	GATC	2 cut(s)	73, 649
MboII	GAAGA	9 cut(s)	16, 177, 477, 601, 719, 841, 1012, 1023, 1079
MfeI	CAATTG	1 cut(s)	1055
MluCI	AATT	6 cut(s)	91, 504, 982, 1003, 1055, 1083
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	442, 654
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	694
MspI	CCGG	3 cut(s)	39, 59, 832
MspR9I	CCNGG	7 cut(s)	17, 30, 39, 105, 636, 833, 1109
MunI	CAATTG	1 cut(s)	1055
MvaI	CCWGG	5 cut(s)	17, 30, 105, 636, 1109
MwoI	GCNNNNNNNGC	5 cut(s)	39, 184, 407, 416, 626
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	2 cut(s)	39, 833
NdeII	GATC	2 cut(s)	73, 649
NgoMIV	GCCGGC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	284, 521, 885, 902, 917
NlaIV	GGNNCC	2 cut(s)	37, 57
NmuCI	GTSAC	4 cut(s)	124, 486, 662, 717
NspI	RCATGY	3 cut(s)	284, 885, 902
PaeI	GCATGC	1 cut(s)	885
PagI	TCATGA	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	700
PciI	ACATGT	1 cut(s)	280
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	65, 724
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	403, 820, 1013, 1081
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	254
PscI	ACATGT	1 cut(s)	280
Psp6I	CCWGG	5 cut(s)	15, 28, 103, 634, 1107
PspGI	CCWGG	5 cut(s)	15, 28, 103, 634, 1107
PspN4I	GGNNCC	2 cut(s)	37, 57
PspPI	GGNCC	4 cut(s)	35, 521, 829, 890
PvuII	CAGCTG	1 cut(s)	694
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	4 cut(s)	402, 819, 1012, 1080
Sau3AI	GATC	2 cut(s)	73, 649
Sau96I	GGNCC	4 cut(s)	35, 521, 829, 890
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	7 cut(s)	17, 30, 39, 105, 636, 833, 1109
SfaNI	GCATC	2 cut(s)	160, 769
SinI	GGWCC	4 cut(s)	35, 521, 829, 890
SmlI	CTYRAG	2 cut(s)	269, 314
SmoI	CTYRAG	2 cut(s)	269, 314
SphI	GCATGC	1 cut(s)	885
Sse9I	AATT	6 cut(s)	91, 504, 982, 1003, 1055, 1083
SseBI	AGGCCT	1 cut(s)	700
SsiI	CCGC	4 cut(s)	33, 159, 401, 1011
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	2 cut(s)	156, 416
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	7 cut(s)	15, 28, 37, 103, 634, 831, 1107
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	256, 1044
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	6 cut(s)	91, 504, 982, 1003, 1055, 1083
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	2 cut(s)	404, 1014
TfiI	GAWTC	2 cut(s)	65, 724
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	4 cut(s)	133, 366, 610, 1002
TseFI	GTSAC	4 cut(s)	124, 486, 662, 717
TseI	GCWGC	2 cut(s)	818, 1079
Tsp45I	GTSAC	4 cut(s)	124, 486, 662, 717
TspDTI	ATGAA	6 cut(s)	17, 291, 647, 809, 930, 1010
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	4 cut(s)	133, 366, 610, 1002
VpaK11BI	GGWCC	4 cut(s)	35, 521, 829, 890
XapI	RAATTY	1 cut(s)	1003
XceI	RCATGY	3 cut(s)	284, 885, 902
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	2 cut(s)	156, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.