Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001369

Physical Location & Seq

Genomic Coordinates Forward (+)

49290548 .. 49296681

Gene Structure 6134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAGATTGTTCACAAGGATTTCATTCCAGGCGGACCCGGCAAAGTCAAGATGGTGCCGGCTGATTCCGATGATCTGTGGTATGTGTACAATTTGATAGCTCCTGGAGATAGTGTTATTGCTGTCACTGTGAGGAAAGTTCTGAGAGAAGGGGCTAGCGGTGGAAGAGATGCAGAGCGTGTGAAGCTGAAGTTAGAAATAAAAGTTGAGGAGGTTGCTGATTATGATAAAGTAGGCAATGTCTTGCGTATACGTGGAAAGAATATCCTTGAGAATGAACATGTAAAGATAGGAGCATATCATACTCTGGAACTTGAGCCTCACCGACCTTTTGTTTTAAAAAAGGATGTGTGGGACTCACTGGCCTTGGACGAACTCAATCAAGCCTGTGATCCTGCGGCGAGTGCTGACCTAGCTGTGGTAATAATGCAAGAAGGATTAGCACATATTCTCCTTGTTGGTAGAAGCTATAGAAAACTATTTCAAGGCCACATTTCATCACTCACTCTAGTTACTAGTTCCCCCTCTTCTTTTGGAGCTTTAAGCAAGTTCTTTGAAAATGTGTTACAGGCTTTCTTGAAGAATGTTGATTTCAGTGTTGTTCGCTGTGCTGTGATTGCAAGTCCAGGTTTCACGAAGGATCAGTTTCATCGTCACTTATTGTTGGAAGCAGAGAGAAAACAGCTGAGGCCTATCATTGAGAACAAGTCACGGATACTTCTTGTGCATACAACCTCGGGTTACAAGCATAGTTTGAGGGAGGTTCTGGATGCTCCAAATGTTATGAATATGATAAAAGATACTAAAGCAGCACAAGAGGTCCGGGCTCTCCAAGATTTCTTCAGTATGCTTTCAAATGAGCCACATCGTGCATGCTATGGACCAAAGCATGTTGAGGTTGCTCATGAACAAATGGCCGTGCAAACCCTTTTGATAACGGATGAGCTGTTCAGGAATGCTGATGTAGTAACGAGGCAAAAATATGTCAATTTGGTGAACTCAGTGAAGAATTCAGGCGGCAATGTTCACATATTTTCTTCTATGCACGTTTCAGGAGAACAACTGGCACAAATAACTGGCATCGCTGCAATTCTTCGTTTCCCTCTACCAGACCTGGATGATATAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0019222 GO:0019439 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070651 GO:0070966 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

378

Amino Acids

42.06

Weight (kDa)

6.96

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pelota_N	PF26356	1 - 130	5e-42	Pelota N-terminal domain
eRF1_2	PF03464	181 - 267	7.1e-17	eRF1 domain 2
eRF1_3	PF03465	271 - 369	2.7e-29	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58390 AT4G27650 AT4G27650 AT4G27650
fragaria_vesca	FvH4_4g33100 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g17270
malus_domestica	MD04G1241200.v1.1 MD12G1258200.v1.1
prunus_persica	Prupe.6G358700_v2.0.a1 Prupe.6G358700_v2.0.a1 Prupe.7G122700_v2.0.a1
pyrus_communis	pycom04g21290 pycom12g23680 pycom14g09460
rosa_chinensis	RchiOBHm_Chr3g0448271 RchiOBHm_Chr3g0471381 RchiOBHm_Chr4g0442151
rosa_laevigata	RLG00000006036 RLG00000024182 RLG00000025931
rosa_multiflora	Rmu_sc0006582.1_g000016 Rmu_sc0010284.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383060 Rroxscaffold_6G00410020 Rroxscaffold_6G00426420
rosa_rugosa	Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug03G0117400 Rorug04G0339300
rosa_samantha	Rh3AG009500 Rh3AG167200 Rh3AG167300 Rh3BG009100 Rh3BG192700 Rh3CG009100 Rh3CG183000 Rh3CG183100 Rh3DG009700 Rh3DG182800 Rh3DG182900 Rh4BG404400 Rh4CG419400 Rh4DG397500
rosa_wichuraiana	Rw3G000770 Rw3G015750 Rw4G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	4 cut(s)	33, 159, 398, 1017
AclWI	GGATC	2 cut(s)	386, 648
AcoI	YGGCCR	1 cut(s)	915
AcsI	RAATTY	1 cut(s)	1009
AcuI	CTGAAG	2 cut(s)	209, 826
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	485, 557, 580, 855
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	4 cut(s)	28, 103, 625, 1113
AloI	GAACNNNNNNTCC	2 cut(s)	932, 964
AluBI	AGCT	7 cut(s)	101, 187, 416, 468, 539, 685, 946
AluI	AGCT	7 cut(s)	101, 187, 416, 468, 539, 685, 946
AlwI	GGATC	2 cut(s)	386, 648
Ama87I	CYCGRG	1 cut(s)	736
AoxI	GGCC	4 cut(s)	363, 487, 689, 915
ApeKI	GCWGC	2 cut(s)	809, 1085
ApoI	RAATTY	1 cut(s)	1009
AspS9I	GGNCC	3 cut(s)	35, 820, 881
AsuC2I	CCSGG	2 cut(s)	39, 824
AsuHPI	GGTGA	2 cut(s)	314, 1006
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	736
AvaII	GGWCC	3 cut(s)	35, 820, 881
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	829
BbvCI	CCTCAGC	1 cut(s)	686
BbvI	GCAGC	2 cut(s)	821, 1072
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	902
BciT130I	CCWGG	4 cut(s)	30, 105, 627, 1115
BciVI	GTATCC	1 cut(s)	708
BcnI	CCSGG	2 cut(s)	39, 824
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	4 cut(s)	156, 413, 509, 516
BfmI	CTRYAG	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	708
BisI	GCNGC	4 cut(s)	399, 810, 1018, 1086
BlsI	GCNGC	4 cut(s)	400, 811, 1019, 1087
Bme1390I	CCNGG	6 cut(s)	30, 39, 105, 627, 824, 1115
Bme18I	GGWCC	3 cut(s)	35, 820, 881
BmeT110I	CYCGRG	1 cut(s)	736
BmgT120I	GGNCC	3 cut(s)	35, 820, 881
BmiI	GGNNCC	2 cut(s)	37, 57
BmrFI	CCNGG	6 cut(s)	30, 39, 105, 627, 824, 1115
BmsI	GCATC	3 cut(s)	160, 760, 1089
BmtI	GCTAGC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	290, 335
BpuMI	CCSGG	2 cut(s)	39, 824
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	366, 735
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	3 cut(s)	366, 1068, 1081
Bse3DI	GCAATG	2 cut(s)	244, 1027
BseBI	CCWGG	4 cut(s)	30, 105, 627, 1115
BseDI	CCNNGG	2 cut(s)	366, 735
BseGI	GGATG	4 cut(s)	352, 775, 946, 1123
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	2 cut(s)	244, 1027
BseMII	CTCAG	3 cut(s)	134, 677, 1014
BseNI	ACTGG	3 cut(s)	366, 1068, 1081
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	821, 1072
BshFI	GGCC	4 cut(s)	365, 489, 691, 917
BshNI	GGYRCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	736
BsiSI	CCGG	3 cut(s)	39, 59, 823
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	961
BsnI	GGCC	4 cut(s)	365, 489, 691, 917
BsoBI	CYCGRG	1 cut(s)	736
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	73, 391, 640
BspACI	CCGC	4 cut(s)	33, 159, 398, 1017
BspANI	GGCC	4 cut(s)	365, 489, 691, 917
BspCNI	CTCAG	3 cut(s)	135, 678, 1013
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	37, 57
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	386, 648
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	244, 1027
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	3 cut(s)	366, 1068, 1081
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	366, 735
BssMI	GATC	3 cut(s)	73, 391, 640
BssNAI	GTATAC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	4 cut(s)	30, 105, 627, 1115
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	160, 532
BstAUI	TGTACA	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	60, 157, 874
BstDEI	CTNAG	3 cut(s)	143, 686, 1000
BstF5I	GGATG	4 cut(s)	352, 775, 946, 1123
BstKTI	GATC	3 cut(s)	76, 394, 643
BstMBI	GATC	3 cut(s)	73, 391, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 184, 404, 413, 617
BstNI	CCWGG	4 cut(s)	30, 105, 627, 1115
BstNSI	RCATGY	3 cut(s)	284, 876, 893
BstSCI	CCNGG	6 cut(s)	28, 37, 103, 625, 822, 1113
BstSFI	CTRYAG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	821, 1072
BstZ17I	GTATAC	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	708
BsuRI	GGCC	4 cut(s)	365, 489, 691, 917
BtgZI	GCGATG	1 cut(s)	1066
BtsCI	GGATG	4 cut(s)	352, 775, 946, 1123
BtsIMutI	CAGTG	4 cut(s)	126, 359, 601, 1008
Cac8I	GCNNGC	3 cut(s)	60, 157, 874
CciI	TCATGA	1 cut(s)	904
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	35, 820, 881
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	4 cut(s)	281, 873, 890, 905
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	3 cut(s)	143, 686, 1000
DpnI	GATC	3 cut(s)	75, 393, 642
DpnII	GATC	3 cut(s)	73, 391, 640
DraI	TTTAAA	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	869
EaeI	YGGCCR	1 cut(s)	915
Eam1104I	CTCTTC	2 cut(s)	160, 532
EarI	CTCTTC	2 cut(s)	160, 532
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	829
Eco47I	GGWCC	3 cut(s)	35, 820, 881
Eco57I	CTGAAG	2 cut(s)	209, 826
Eco88I	CYCGRG	1 cut(s)	736
EcoRI	GAATTC	1 cut(s)	1009
EcoRII	CCWGG	4 cut(s)	28, 103, 625, 1113
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	829
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	284, 876, 893, 908
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	4 cut(s)	280, 872, 889, 904
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	399, 810, 1018, 1086
FokI	GGATG	4 cut(s)	359, 782, 953, 1130
FriOI	GRGCYC	1 cut(s)	829
Fsp4HI	GCNGC	4 cut(s)	399, 810, 1018, 1086
FspBI	CTAG	4 cut(s)	156, 413, 509, 516
GluI	GCNGC	4 cut(s)	399, 810, 1018, 1086
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	365, 489, 691, 917
HapII	CCGG	3 cut(s)	39, 59, 823
Hin1II	CATG	4 cut(s)	284, 876, 893, 908
HinfI	GANTC	2 cut(s)	65, 356
HpaII	CCGG	3 cut(s)	39, 59, 823
HphI	GGTGA	2 cut(s)	314, 1006
Hpy166II	GTNNAC	5 cut(s)	13, 88, 251, 997, 1027
Hpy188I	TCNGA	2 cut(s)	70, 144
Hpy188III	TCNNGA	8 cut(s)	49, 308, 577, 634, 767, 905, 952, 1053
Hpy8I	GTNNAC	5 cut(s)	13, 88, 251, 997, 1027
HpyAV	CCTTC	3 cut(s)	143, 428, 631
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	253, 1047
HpyCH4V	TGCA	8 cut(s)	173, 430, 620, 727, 872, 922, 1045, 1088
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 184, 404, 413, 617
HpyF3I	CTNAG	3 cut(s)	143, 686, 1000
HpySE526I	ACGT	2 cut(s)	253, 1047
Hsp92II	CATG	4 cut(s)	284, 876, 893, 908
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	73, 391, 640
LmnI	GCTCC	4 cut(s)	106, 293, 536, 778
Lsp1109I	GCAGC	2 cut(s)	821, 1072
LweI	GCATC	3 cut(s)	160, 760, 1089
MaeI	CTAG	4 cut(s)	156, 413, 509, 516
MaeII	ACGT	2 cut(s)	253, 1047
MaeIII	GTNAC	7 cut(s)	124, 511, 564, 653, 708, 740, 967
MalI	GATC	3 cut(s)	75, 393, 642
MboI	GATC	3 cut(s)	73, 391, 640
MboII	GAAGA	8 cut(s)	16, 177, 519, 592, 832, 1018, 1029, 1085
MhlI	GDGCHC	1 cut(s)	829
MluCI	AATT	4 cut(s)	91, 988, 1009, 1089
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	645
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	2 cut(s)	338, 542
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	3 cut(s)	39, 59, 823
MspR9I	CCNGG	6 cut(s)	30, 39, 105, 627, 824, 1115
Mva1269I	GAATGC	1 cut(s)	961
MvaI	CCWGG	4 cut(s)	30, 105, 627, 1115
MwoI	GCNNNNNNNGC	5 cut(s)	39, 184, 404, 413, 617
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	2 cut(s)	39, 824
NdeII	GATC	3 cut(s)	73, 391, 640
NgoMIV	GCCGGC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	4 cut(s)	284, 876, 893, 908
NlaIV	GGNNCC	2 cut(s)	37, 57
NmuCI	GTSAC	3 cut(s)	124, 653, 708
NspI	RCATGY	3 cut(s)	284, 876, 893
PaeI	GCATGC	1 cut(s)	876
PagI	TCATGA	1 cut(s)	904
PceI	AGGCCT	1 cut(s)	691
PciI	ACATGT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	961
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	400, 811, 1019, 1087
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	254
PscI	ACATGT	1 cut(s)	280
Psp6I	CCWGG	4 cut(s)	28, 103, 625, 1113
PspGI	CCWGG	4 cut(s)	28, 103, 625, 1113
PspN4I	GGNNCC	2 cut(s)	37, 57
PspPI	GGNCC	3 cut(s)	35, 820, 881
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	338, 542
SatI	GCNGC	4 cut(s)	399, 810, 1018, 1086
Sau3AI	GATC	3 cut(s)	73, 391, 640
Sau96I	GGNCC	3 cut(s)	35, 820, 881
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	6 cut(s)	30, 39, 105, 627, 824, 1115
SduI	GDGCHC	1 cut(s)	829
SfaNI	GCATC	3 cut(s)	160, 760, 1089
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	3 cut(s)	35, 820, 881
SmlI	CTYRAG	2 cut(s)	269, 314
SmoI	CTYRAG	2 cut(s)	269, 314
SpeI	ACTAGT	1 cut(s)	515
SphI	GCATGC	1 cut(s)	876
Sse9I	AATT	4 cut(s)	91, 988, 1009, 1089
SseBI	AGGCCT	1 cut(s)	691
SsiI	CCGC	4 cut(s)	33, 159, 398, 1017
SspMI	CTAG	4 cut(s)	156, 413, 509, 516
StuI	AGGCCT	1 cut(s)	691
StyD4I	CCNGG	6 cut(s)	28, 37, 103, 625, 822, 1113
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	256, 1050
TasI	AATT	4 cut(s)	91, 988, 1009, 1089
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	2 cut(s)	401, 1020
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	338, 542
Tru9I	TTAA	2 cut(s)	338, 542
TscAI	CASTG	4 cut(s)	133, 366, 601, 1008
TseFI	GTSAC	3 cut(s)	124, 653, 708
TseI	GCWGC	2 cut(s)	809, 1085
Tsp45I	GTSAC	3 cut(s)	124, 653, 708
TspDTI	ATGAA	7 cut(s)	13, 17, 291, 486, 638, 800, 921
TspGWI	ACGGA	2 cut(s)	727, 953
TspRI	CASTG	4 cut(s)	133, 366, 601, 1008
VpaK11BI	GGWCC	3 cut(s)	35, 820, 881
XapI	RAATTY	1 cut(s)	1009
XceI	RCATGY	3 cut(s)	284, 876, 893
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	4 cut(s)	156, 413, 509, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.