Rh4BG404400
ERF Family

May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
55483838 .. 55484977
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG404400.1

Sequence Viewer

Length: 1140 bp
ATGAAGGTTTCAAAGCACAGGATTGTTGCAGGCCAAGCCGGCAGCGTTGAGATGAAACCGGTTGATTCAGATGATCTATGGTACGTTTACAATTTGATTTCTCCAGGAGACACGGTTAGGGCTACTACTGTGAGGAAAGTGATAAGAGAATCAACTGGAAGAGACTCTACTGCAGAGCGTGTTAAGCTCAAGCTGGAAATCAAAGTTGAGGAGGTTGCTGATTATGACAAGGTCGGATCTGTTCTTCGGATTCGAGGAAAGAATATCAGTCCCAATGAACATGTAAGGTTAGGAGCATATCATACTTTGGAGCTTGAACTTGAACGACCTTTTGTGTTGACAAAGGATGTTTGGGACTCATTGGCCTTGGAGGAGCTCAAACAAGCCTCCGACCCCGGGGGTAGTGCTGATCTAGTTGTGGTGTTAATGCAAGAAGGACTAGCATATATTCTGAAAGTTGGTAAAAGCGTGACAGTTACTTGTGCACGAATTGAGACTTCAATTCCTCGCAAGCATGGACCTTCGGTTAAGGGTTATGAGTCGGCTTTGAGTAGGTTTTTCGAGAGGGTCTTGAAGGCTTTCTTGCAGCATGTCGATTTCAGCGTTGTAGGATGTGCTGTGATTGCTAGTCCAGGTTTCACCAAGGATCAGTTTCATAAACACTTGCTGTTGGAAGCAGAAAGAAAGCAGCTGAGACCTATTATCGAGAACAAGTCCAAGATAATTCTTGTGCATTCTAGCTCGGGTTACAAGCATAGTTTGAGGGAGGTTCTTGACGATGAGAAAATTATGAGTTTGATAAAAGATACTAAAGCAGCACAAGAGGTCCGAGCTCTCCAAGATTTCTTCAGTATGATGTCGAATGTACCAGAACGCGCCTGCTATGGACCAAAGCATGTTGAGGTTGCACATGAAAAGATAGCCGTGCAAACCCTACTCATAACAGATGAACTCTTCAGGAATGCTGATGTATTAGAGAGGCAAAAATATGTTGATTTGGTGAACTCAGTCAAGGATTCAGGGGGCATTGTTCATATATTTTCTTCCTTACACGTTTCAGGAGAACAACTAGCACAAATTACAGGCATTGCTGCAATCCTTCGTTTCCCTCTACCCGAATTGGATGATATAGAGATGTAA

Protein Analysis

379

Amino Acids

42.36

Weight (kDa)

6.69

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pelota_N PF26356 1 - 129 5.8e-41 Pelota N-terminal domain
eRF1_2 PF03464 139 - 267 4.6e-25 eRF1 domain 2
eRF1_3 PF03465 273 - 371 2.9e-26 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 876
AclWI GGATC 2 cut(s) 244, 654
AcuI CTGAAG 2 cut(s) 832, 940
AfaI GTAC 2 cut(s) 83, 867
AfiI CCNNNNNNNGG 1 cut(s) 396
AflIII ACRYGT 2 cut(s) 280, 1051
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 5 cut(s) 12, 317, 323, 501, 574
AjnI CCWGG 2 cut(s) 103, 631
AluBI AGCT 7 cut(s) 187, 193, 313, 376, 691, 741, 833
AluI AGCT 7 cut(s) 187, 193, 313, 376, 691, 741, 833
Alw21I GWGCWC 3 cut(s) 378, 487, 835
Alw26I GTCTC 4 cut(s) 102, 156, 488, 688
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 2 cut(s) 244, 654
Ama87I CYCGRG 2 cut(s) 395, 742
AoxI GGCC 2 cut(s) 31, 363
ApaLI GTGCAC 1 cut(s) 483
ApeKI GCWGC 5 cut(s) 42, 586, 688, 815, 1091
AsiGI ACCGGT 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 878
AspS9I GGNCC 3 cut(s) 518, 826, 887
AsuC2I CCSGG 2 cut(s) 396, 397
AsuHPI GGTGA 2 cut(s) 631, 1012
AvaI CYCGRG 2 cut(s) 395, 742
AvaII GGWCC 3 cut(s) 518, 826, 887
BaeGI GKGCMC 1 cut(s) 487
BanII GRGCYC 2 cut(s) 378, 835
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
Bbv12I GWGCWC 3 cut(s) 378, 487, 835
BbvI GCAGC 5 cut(s) 54, 598, 700, 827, 1078
BceAI ACGGC 1 cut(s) 908
BciT130I CCWGG 2 cut(s) 105, 633
BcnI CCSGG 2 cut(s) 396, 397
BcoDI GTCTC 4 cut(s) 102, 156, 488, 688
BfaI CTAG 5 cut(s) 413, 440, 627, 738, 1070
BfmI CTRYAG 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 39
BisI GCNGC 5 cut(s) 43, 587, 689, 816, 1092
BlsI GCNGC 5 cut(s) 44, 588, 690, 817, 1093
Bme1390I CCNGG 4 cut(s) 105, 396, 397, 633
Bme18I GGWCC 3 cut(s) 518, 826, 887
BmeT110I CYCGRG 2 cut(s) 395, 742
BmgT120I GGNCC 3 cut(s) 518, 826, 887
BmrFI CCNGG 4 cut(s) 105, 396, 397, 633
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 396, 397
BsaI GGTCTC 1 cut(s) 688
BsaJI CCNNGG 5 cut(s) 366, 394, 395, 396, 642
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse118I RCCGGY 2 cut(s) 38, 58
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 1086
BseBI CCWGG 2 cut(s) 105, 633
BseDI CCNNGG 5 cut(s) 366, 394, 395, 396, 642
BseGI GGATG 3 cut(s) 352, 617, 1129
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 1086
BseMII CTCAG 2 cut(s) 683, 1020
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 224, 386
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 5 cut(s) 54, 598, 700, 827, 1078
Bsh1236I CGCG 1 cut(s) 876
BshFI GGCC 2 cut(s) 33, 365
BshTI ACCGGT 1 cut(s) 58
BsiHKAI GWGCWC 3 cut(s) 378, 487, 835
BsiHKCI CYCGRG 2 cut(s) 395, 742
BsiSI CCGG 3 cut(s) 39, 59, 396
BslFI GGGAC 2 cut(s) 255, 368
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 4 cut(s) 102, 156, 488, 688
BsmFI GGGAC 2 cut(s) 255, 368
BsmI GAATGC 2 cut(s) 733, 967
BsnI GGCC 2 cut(s) 33, 365
Bso31I GGTCTC 1 cut(s) 688
BsoBI CYCGRG 2 cut(s) 395, 742
Bsp1286I GDGCHC 3 cut(s) 378, 487, 835
Bsp143I GATC 4 cut(s) 73, 236, 409, 646
BspANI GGCC 2 cut(s) 33, 365
BspCNI CTCAG 2 cut(s) 684, 1019
BspFNI CGCG 1 cut(s) 876
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 244, 654
BspTNI GGTCTC 1 cut(s) 688
BsrDI GCAATG 1 cut(s) 1086
BsrFI RCCGGY 2 cut(s) 38, 58
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 2 cut(s) 38, 58
BssECI CCNNGG 5 cut(s) 366, 394, 395, 396, 642
BssMI GATC 4 cut(s) 73, 236, 409, 646
BssT1I CCWWGG 2 cut(s) 366, 642
Bst2UI CCWGG 2 cut(s) 105, 633
Bst4CI ACNGT 3 cut(s) 115, 130, 475
Bst6I CTCTTC 2 cut(s) 154, 959
BstC8I GCNNGC 4 cut(s) 31, 40, 512, 880
BstDEI CTNAG 2 cut(s) 692, 1006
BstF5I GGATG 3 cut(s) 352, 617, 1129
BstFNI CGCG 1 cut(s) 876
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 4 cut(s) 76, 239, 412, 649
BstMAI GTCTC 4 cut(s) 102, 156, 488, 688
BstMBI GATC 4 cut(s) 73, 236, 409, 646
BstMWI GCNNNNNNNGC 4 cut(s) 35, 39, 184, 623
BstNI CCWGG 2 cut(s) 105, 633
BstNSI RCATGY 3 cut(s) 284, 593, 899
BstSCI CCNGG 4 cut(s) 103, 394, 395, 631
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 876
BstV1I GCAGC 5 cut(s) 54, 598, 700, 827, 1078
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BsuRI GGCC 2 cut(s) 33, 365
BtsCI GGATG 3 cut(s) 352, 617, 1129
Cac8I GCNNGC 4 cut(s) 31, 40, 512, 880
CfoI GCGC 1 cut(s) 878
Cfr10I RCCGGY 2 cut(s) 38, 58
Cfr13I GGNCC 3 cut(s) 518, 826, 887
Cfr9I CCCGGG 1 cut(s) 395
Csp6I GTAC 2 cut(s) 82, 866
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 5 cut(s) 281, 515, 590, 896, 911
CviQI GTAC 2 cut(s) 82, 866
DdeI CTNAG 2 cut(s) 692, 1006
DpnI GATC 4 cut(s) 75, 238, 411, 648
DpnII GATC 4 cut(s) 73, 236, 409, 646
Eam1104I CTCTTC 2 cut(s) 154, 959
EarI CTCTTC 2 cut(s) 154, 959
Ecl136II GAGCTC 2 cut(s) 376, 833
Eco130I CCWWGG 2 cut(s) 366, 642
Eco24I GRGCYC 2 cut(s) 378, 835
Eco31I GGTCTC 1 cut(s) 688
Eco47I GGWCC 3 cut(s) 518, 826, 887
Eco53kI GAGCTC 2 cut(s) 376, 833
Eco57I CTGAAG 2 cut(s) 832, 940
Eco88I CYCGRG 2 cut(s) 395, 742
EcoICRI GAGCTC 2 cut(s) 376, 833
EcoRII CCWGG 2 cut(s) 103, 631
EcoT14I CCWWGG 2 cut(s) 366, 642
EcoT38I GRGCYC 2 cut(s) 378, 835
ErhI CCWWGG 2 cut(s) 366, 642
FaeI CATG 5 cut(s) 284, 518, 593, 899, 914
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 2 cut(s) 255, 368
FatI CATG 5 cut(s) 280, 514, 589, 895, 910
Fnu4HI GCNGC 5 cut(s) 43, 587, 689, 816, 1092
FokI GGATG 3 cut(s) 359, 624, 1136
FriOI GRGCYC 2 cut(s) 378, 835
Fsp4HI GCNGC 5 cut(s) 43, 587, 689, 816, 1092
FspBI CTAG 5 cut(s) 413, 440, 627, 738, 1070
GlaI GCGC 1 cut(s) 877
GluI GCNGC 5 cut(s) 43, 587, 689, 816, 1092
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 2 cut(s) 33, 365
HapII CCGG 3 cut(s) 39, 59, 396
HhaI GCGC 1 cut(s) 878
Hin1II CATG 5 cut(s) 284, 518, 593, 899, 914
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 7 cut(s) 65, 149, 164, 250, 356, 539, 1016
HpaII CCGG 3 cut(s) 39, 59, 396
HphI GGTGA 2 cut(s) 631, 1012
Hpy166II GTNNAC 4 cut(s) 88, 339, 485, 1003
Hpy188I TCNGA 6 cut(s) 70, 236, 249, 391, 453, 830
Hpy188III TCNNGA 6 cut(s) 562, 571, 706, 773, 958, 1059
Hpy8I GTNNAC 4 cut(s) 88, 339, 485, 1003
HpyAV CCTTC 4 cut(s) 428, 531, 568, 1109
HpyCH4III ACNGT 3 cut(s) 115, 130, 475
HpyCH4IV ACGT 2 cut(s) 84, 1053
HpyCH4V TGCA 9 cut(s) 29, 173, 430, 485, 586, 733, 908, 928, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 39, 184, 623
HpyF3I CTNAG 2 cut(s) 692, 1006
HpySE526I ACGT 2 cut(s) 84, 1053
Hsp92II CATG 5 cut(s) 284, 518, 593, 899, 914
HspAI GCGC 1 cut(s) 876
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 4 cut(s) 73, 236, 409, 646
LmnI GCTCC 3 cut(s) 293, 310, 373
Lsp1109I GCAGC 5 cut(s) 54, 598, 700, 827, 1078
MaeI CTAG 5 cut(s) 413, 440, 627, 738, 1070
MaeII ACGT 2 cut(s) 84, 1053
MaeIII GTNAC 3 cut(s) 469, 475, 746
MalI GATC 4 cut(s) 75, 238, 411, 648
MboI GATC 4 cut(s) 73, 236, 409, 646
MboII GAAGA 5 cut(s) 171, 236, 838, 946, 1035
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 3 cut(s) 378, 487, 835
MluCI AATT 7 cut(s) 91, 489, 501, 723, 786, 1077, 1118
MlyI GAGTC 3 cut(s) 158, 350, 548
MmeI TCCRAC 3 cut(s) 214, 414, 651
MroNI GCCGGC 1 cut(s) 38
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 3 cut(s) 183, 425, 528
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 3 cut(s) 39, 59, 396
MspR9I CCNGG 4 cut(s) 105, 396, 397, 633
Mva1269I GAATGC 2 cut(s) 733, 967
MvaI CCWGG 2 cut(s) 105, 633
MvnI CGCG 1 cut(s) 876
MwoI GCNNNNNNNGC 4 cut(s) 35, 39, 184, 623
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 2 cut(s) 396, 397
NdeII GATC 4 cut(s) 73, 236, 409, 646
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 5 cut(s) 284, 518, 593, 899, 914
NmuCI GTSAC 1 cut(s) 469
NspI RCATGY 3 cut(s) 284, 593, 899
PciI ACATGT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PctI GAATGC 2 cut(s) 733, 967
PdiI GCCGGC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 4 cut(s) 65, 149, 250, 1016
PflFI GACNNNGTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 5 cut(s) 44, 588, 690, 817, 1093
PleI GAGTC 3 cut(s) 158, 350, 547
PpsI GAGTC 3 cut(s) 158, 350, 547
PscI ACATGT 1 cut(s) 280
Psp124BI GAGCTC 2 cut(s) 378, 835
Psp6I CCWGG 2 cut(s) 103, 631
PspGI CCWGG 2 cut(s) 103, 631
PspPI GGNCC 3 cut(s) 518, 826, 887
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 2 cut(s) 83, 867
RsaNI GTAC 2 cut(s) 82, 866
SacI GAGCTC 2 cut(s) 378, 835
SaqAI TTAA 3 cut(s) 183, 425, 528
SatI GCNGC 5 cut(s) 43, 587, 689, 816, 1092
Sau3AI GATC 4 cut(s) 73, 236, 409, 646
Sau96I GGNCC 3 cut(s) 518, 826, 887
SchI GAGTC 3 cut(s) 158, 350, 548
ScrFI CCNGG 4 cut(s) 105, 396, 397, 633
SduI GDGCHC 3 cut(s) 378, 487, 835
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 3 cut(s) 518, 826, 887
SmaI CCCGGG 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 7 cut(s) 91, 489, 501, 723, 786, 1077, 1118
SspMI CTAG 5 cut(s) 413, 440, 627, 738, 1070
SstI GAGCTC 2 cut(s) 378, 835
StyD4I CCNGG 4 cut(s) 103, 394, 395, 631
StyI CCWWGG 2 cut(s) 366, 642
TaaI ACNGT 3 cut(s) 115, 130, 475
TaiI ACGT 2 cut(s) 87, 1056
TaqI TCGA 5 cut(s) 253, 561, 594, 705, 860
TasI AATT 7 cut(s) 91, 489, 501, 723, 786, 1077, 1118
TfiI GAWTC 4 cut(s) 65, 149, 250, 1016
Tru1I TTAA 3 cut(s) 183, 425, 528
Tru9I TTAA 3 cut(s) 183, 425, 528
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 5 cut(s) 42, 586, 688, 815, 1091
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 7 cut(s) 17, 68, 291, 644, 927, 963, 1022
TspMI CCCGGG 1 cut(s) 395
Tth111I GACNNNGTC 1 cut(s) 230
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 3 cut(s) 518, 826, 887
XceI RCATGY 3 cut(s) 284, 593, 899
XmaI CCCGGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 5 cut(s) 413, 440, 627, 738, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.