May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 156 |
| AclWI | GGATC | 4 cut(s) | 59, 381, 386, 657 |
| AcsI | RAATTY | 1 cut(s) | 1071 |
| AcuI | CTGAAG | 2 cut(s) | 156, 946 |
| AfeI | AGCGCT | 1 cut(s) | 406 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 396 |
| AflIII | ACRYGT | 1 cut(s) | 280 |
| AgeI | ACCGGT | 1 cut(s) | 58 |
| AgsI | TTSAA | 2 cut(s) | 190, 504 |
| AjnI | CCWGG | 1 cut(s) | 634 |
| AluBI | AGCT | 6 cut(s) | 52, 419, 694, 744, 836, 929 |
| AluI | AGCT | 6 cut(s) | 52, 419, 694, 744, 836, 929 |
| Alw21I | GWGCWC | 2 cut(s) | 490, 838 |
| Alw26I | GTCTC | 2 cut(s) | 102, 491 |
| Alw44I | GTGCAC | 1 cut(s) | 486 |
| AlwI | GGATC | 4 cut(s) | 59, 381, 386, 657 |
| Ama87I | CYCGRG | 2 cut(s) | 395, 745 |
| Aor51HI | AGCGCT | 1 cut(s) | 406 |
| AoxI | GGCC | 3 cut(s) | 363, 384, 698 |
| ApaLI | GTGCAC | 1 cut(s) | 486 |
| ApeKI | GCWGC | 5 cut(s) | 42, 589, 691, 818, 1085 |
| ApoI | RAATTY | 1 cut(s) | 1071 |
| AsiGI | ACCGGT | 1 cut(s) | 58 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 581 |
| AspLEI | GCGC | 2 cut(s) | 407, 1069 |
| AspS9I | GGNCC | 4 cut(s) | 310, 521, 829, 890 |
| AsuC2I | CCSGG | 3 cut(s) | 105, 396, 397 |
| AsuHPI | GGTGA | 1 cut(s) | 634 |
| AvaI | CYCGRG | 2 cut(s) | 395, 745 |
| AvaII | GGWCC | 4 cut(s) | 310, 521, 829, 890 |
| BaeGI | GKGCMC | 1 cut(s) | 490 |
| BanII | GRGCYC | 1 cut(s) | 838 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 151, 183 |
| BauI | CACGAG | 2 cut(s) | 483, 489 |
| Bbv12I | GWGCWC | 2 cut(s) | 490, 838 |
| BbvCI | CCTCAGC | 1 cut(s) | 695 |
| BbvI | GCAGC | 5 cut(s) | 54, 601, 703, 830, 1072 |
| BccI | CCATC | 1 cut(s) | 424 |
| BciT130I | CCWGG | 1 cut(s) | 636 |
| BcnI | CCSGG | 3 cut(s) | 105, 396, 397 |
| BcoDI | GTCTC | 2 cut(s) | 102, 491 |
| BfaI | CTAG | 6 cut(s) | 153, 416, 443, 630, 741, 1064 |
| BfoI | RGCGCY | 1 cut(s) | 408 |
| BglII | AGATCT | 1 cut(s) | 73 |
| BisI | GCNGC | 5 cut(s) | 43, 590, 692, 819, 1086 |
| BlsI | GCNGC | 5 cut(s) | 44, 591, 693, 820, 1087 |
| Bme1390I | CCNGG | 4 cut(s) | 105, 396, 397, 636 |
| Bme18I | GGWCC | 4 cut(s) | 310, 521, 829, 890 |
| BmeT110I | CYCGRG | 2 cut(s) | 395, 745 |
| BmgT120I | GGNCC | 4 cut(s) | 310, 521, 829, 890 |
| BmiI | GGNNCC | 1 cut(s) | 870 |
| BmrFI | CCNGG | 4 cut(s) | 105, 396, 397, 636 |
| Bpu10I | CCTNAGC | 1 cut(s) | 695 |
| BpuMI | CCSGG | 3 cut(s) | 105, 396, 397 |
| BsaJI | CCNNGG | 5 cut(s) | 366, 395, 396, 645, 864 |
| BsaWI | WCCGGW | 1 cut(s) | 58 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 99, 129 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 396 |
| Bse118I | RCCGGY | 3 cut(s) | 29, 38, 58 |
| Bse3DI | GCAATG | 1 cut(s) | 1080 |
| BseBI | CCWGG | 1 cut(s) | 636 |
| BseDI | CCNNGG | 5 cut(s) | 366, 395, 396, 645, 864 |
| BseGI | GGATG | 2 cut(s) | 352, 620 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 396 |
| BseMI | GCAATG | 1 cut(s) | 1080 |
| BseMII | CTCAG | 1 cut(s) | 686 |
| BseSI | GKGCMC | 1 cut(s) | 490 |
| BseXI | GCAGC | 5 cut(s) | 54, 601, 703, 830, 1072 |
| Bsh1285I | CGRYCG | 1 cut(s) | 325 |
| BshFI | GGCC | 3 cut(s) | 365, 386, 700 |
| BshTI | ACCGGT | 1 cut(s) | 58 |
| BsiEI | CGRYCG | 1 cut(s) | 325 |
| BsiHKAI | GWGCWC | 2 cut(s) | 490, 838 |
| BsiHKCI | CYCGRG | 2 cut(s) | 395, 745 |
| BsiSI | CCGG | 5 cut(s) | 30, 39, 59, 104, 396 |
| BslFI | GGGAC | 3 cut(s) | 176, 368, 1085 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 396 |
| BsmAI | GTCTC | 2 cut(s) | 102, 491 |
| BsmFI | GGGAC | 3 cut(s) | 176, 368, 1085 |
| BsmI | GAATGC | 1 cut(s) | 736 |
| BsnI | GGCC | 3 cut(s) | 365, 386, 700 |
| BsoBI | CYCGRG | 2 cut(s) | 395, 745 |
| Bsp1286I | GDGCHC | 2 cut(s) | 490, 838 |
| Bsp143I | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| BspACI | CCGC | 1 cut(s) | 156 |
| BspANI | GGCC | 3 cut(s) | 365, 386, 700 |
| BspCNI | CTCAG | 1 cut(s) | 687 |
| BspHI | TCATGA | 1 cut(s) | 916 |
| BspLI | GGNNCC | 1 cut(s) | 870 |
| BspPI | GGATC | 4 cut(s) | 59, 381, 386, 657 |
| BsrDI | GCAATG | 1 cut(s) | 1080 |
| BsrFI | RCCGGY | 3 cut(s) | 29, 38, 58 |
| BssAI | RCCGGY | 3 cut(s) | 29, 38, 58 |
| BssECI | CCNNGG | 5 cut(s) | 366, 395, 396, 645, 864 |
| BssMI | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| BssSI | CACGAG | 2 cut(s) | 483, 489 |
| BssT1I | CCWWGG | 2 cut(s) | 366, 645 |
| Bst2BI | CACGAG | 2 cut(s) | 483, 489 |
| Bst2UI | CCWGG | 1 cut(s) | 636 |
| Bst4CI | ACNGT | 4 cut(s) | 115, 130, 179, 478 |
| Bst6I | CTCTTC | 1 cut(s) | 965 |
| BstC8I | GCNNGC | 4 cut(s) | 31, 40, 515, 883 |
| BstDEI | CTNAG | 2 cut(s) | 53, 695 |
| BstF5I | GGATG | 2 cut(s) | 352, 620 |
| BstH2I | RGCGCY | 1 cut(s) | 408 |
| BstHHI | GCGC | 2 cut(s) | 407, 1069 |
| BstKTI | GATC | 7 cut(s) | 67, 76, 325, 376, 394, 415, 652 |
| BstMAI | GTCTC | 2 cut(s) | 102, 491 |
| BstMBI | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| BstMCI | CGRYCG | 1 cut(s) | 325 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 35, 39, 578, 697 |
| BstNI | CCWGG | 1 cut(s) | 636 |
| BstNSI | RCATGY | 3 cut(s) | 284, 596, 902 |
| BstSCI | CCNGG | 4 cut(s) | 103, 394, 395, 634 |
| BstSLI | GKGCMC | 1 cut(s) | 490 |
| BstV1I | GCAGC | 5 cut(s) | 54, 601, 703, 830, 1072 |
| BstX2I | RGATCY | 2 cut(s) | 73, 373 |
| BstYI | RGATCY | 2 cut(s) | 73, 373 |
| BsuRI | GGCC | 3 cut(s) | 365, 386, 700 |
| BtsCI | GGATG | 2 cut(s) | 352, 620 |
| Cac8I | GCNNGC | 4 cut(s) | 31, 40, 515, 883 |
| CciI | TCATGA | 1 cut(s) | 916 |
| CfoI | GCGC | 2 cut(s) | 407, 1069 |
| Cfr10I | RCCGGY | 3 cut(s) | 29, 38, 58 |
| Cfr13I | GGNCC | 4 cut(s) | 310, 521, 829, 890 |
| Cfr9I | CCCGGG | 1 cut(s) | 395 |
| CspAI | ACCGGT | 1 cut(s) | 58 |
| CviAII | CATG | 6 cut(s) | 281, 518, 593, 899, 917, 1028 |
| DdeI | CTNAG | 2 cut(s) | 53, 695 |
| DpnI | GATC | 7 cut(s) | 66, 75, 324, 375, 393, 414, 651 |
| DpnII | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| Eam1104I | CTCTTC | 1 cut(s) | 965 |
| EarI | CTCTTC | 1 cut(s) | 965 |
| Ecl136II | GAGCTC | 1 cut(s) | 836 |
| Eco130I | CCWWGG | 2 cut(s) | 366, 645 |
| Eco147I | AGGCCT | 2 cut(s) | 386, 700 |
| Eco24I | GRGCYC | 1 cut(s) | 838 |
| Eco47I | GGWCC | 4 cut(s) | 310, 521, 829, 890 |
| Eco47III | AGCGCT | 1 cut(s) | 406 |
| Eco53kI | GAGCTC | 1 cut(s) | 836 |
| Eco57I | CTGAAG | 2 cut(s) | 156, 946 |
| Eco88I | CYCGRG | 2 cut(s) | 395, 745 |
| EcoICRI | GAGCTC | 1 cut(s) | 836 |
| EcoRII | CCWGG | 1 cut(s) | 634 |
| EcoT14I | CCWWGG | 2 cut(s) | 366, 645 |
| EcoT38I | GRGCYC | 1 cut(s) | 838 |
| ErhI | CCWWGG | 2 cut(s) | 366, 645 |
| FaeI | CATG | 6 cut(s) | 284, 521, 596, 902, 920, 1031 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 569, 601 |
| FaqI | GGGAC | 3 cut(s) | 176, 368, 1085 |
| FatI | CATG | 6 cut(s) | 280, 517, 592, 898, 916, 1027 |
| Fnu4HI | GCNGC | 5 cut(s) | 43, 590, 692, 819, 1086 |
| FokI | GGATG | 2 cut(s) | 359, 627 |
| FriOI | GRGCYC | 1 cut(s) | 838 |
| Fsp4HI | GCNGC | 5 cut(s) | 43, 590, 692, 819, 1086 |
| FspBI | CTAG | 6 cut(s) | 153, 416, 443, 630, 741, 1064 |
| GlaI | GCGC | 2 cut(s) | 406, 1068 |
| GluI | GCNGC | 5 cut(s) | 43, 590, 692, 819, 1086 |
| HaeII | RGCGCY | 1 cut(s) | 408 |
| HaeIII | GGCC | 3 cut(s) | 365, 386, 700 |
| HapII | CCGG | 5 cut(s) | 30, 39, 59, 104, 396 |
| HhaI | GCGC | 2 cut(s) | 407, 1069 |
| Hin1II | CATG | 6 cut(s) | 284, 521, 596, 902, 920, 1031 |
| Hin6I | GCGC | 2 cut(s) | 405, 1067 |
| HinP1I | GCGC | 2 cut(s) | 405, 1067 |
| HincII | GTYRAC | 1 cut(s) | 339 |
| HindII | GTYRAC | 1 cut(s) | 339 |
| HinfI | GANTC | 6 cut(s) | 149, 164, 356, 542, 967, 1010 |
| HpaII | CCGG | 5 cut(s) | 30, 39, 59, 104, 396 |
| HphI | GGTGA | 1 cut(s) | 634 |
| Hpy166II | GTNNAC | 3 cut(s) | 88, 339, 488 |
| Hpy188I | TCNGA | 6 cut(s) | 175, 249, 391, 833, 865, 972 |
| Hpy188III | TCNNGA | 8 cut(s) | 68, 208, 255, 565, 776, 917, 964, 1053 |
| Hpy8I | GTNNAC | 3 cut(s) | 88, 339, 488 |
| HpyAV | CCTTC | 6 cut(s) | 153, 431, 534, 571, 1009, 1103 |
| HpyCH4III | ACNGT | 4 cut(s) | 115, 130, 179, 478 |
| HpyCH4IV | ACGT | 3 cut(s) | 84, 877, 1047 |
| HpyCH4V | TGCA | 7 cut(s) | 317, 488, 589, 736, 934, 1045, 1088 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 35, 39, 578, 697 |
| HpyF3I | CTNAG | 2 cut(s) | 53, 695 |
| HpySE526I | ACGT | 3 cut(s) | 84, 877, 1047 |
| Hsp92II | CATG | 6 cut(s) | 284, 521, 596, 902, 920, 1031 |
| HspAI | GCGC | 2 cut(s) | 405, 1067 |
| KroI | GCCGGC | 2 cut(s) | 29, 38 |
| KroNI | GCCGGC | 2 cut(s) | 31, 40 |
| Kzo9I | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| LmnI | GCTCC | 1 cut(s) | 293 |
| Lsp1109I | GCAGC | 5 cut(s) | 54, 601, 703, 830, 1072 |
| MaeI | CTAG | 6 cut(s) | 153, 416, 443, 630, 741, 1064 |
| MaeII | ACGT | 3 cut(s) | 84, 877, 1047 |
| MaeIII | GTNAC | 3 cut(s) | 265, 478, 749 |
| MalI | GATC | 7 cut(s) | 66, 75, 324, 375, 393, 414, 651 |
| MboI | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| MboII | GAAGA | 4 cut(s) | 83, 223, 952, 1029 |
| MflI | RGATCY | 2 cut(s) | 73, 373 |
| MhlI | GDGCHC | 2 cut(s) | 490, 838 |
| MluCI | AATT | 4 cut(s) | 504, 726, 1071, 1112 |
| MlyI | GAGTC | 5 cut(s) | 158, 158, 350, 976, 1004 |
| MmeI | TCCRAC | 2 cut(s) | 592, 654 |
| MroNI | GCCGGC | 2 cut(s) | 29, 38 |
| MroXI | GAANNNNTTC | 1 cut(s) | 581 |
| MseI | TTAA | 3 cut(s) | 183, 531, 602 |
| MspA1I | CMGCKG | 2 cut(s) | 694, 929 |
| MspI | CCGG | 5 cut(s) | 30, 39, 59, 104, 396 |
| MspR9I | CCNGG | 4 cut(s) | 105, 396, 397, 636 |
| Mva1269I | GAATGC | 1 cut(s) | 736 |
| MvaI | CCWGG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 35, 39, 578, 697 |
| NaeI | GCCGGC | 2 cut(s) | 31, 40 |
| NciI | CCSGG | 3 cut(s) | 105, 396, 397 |
| NdeII | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| NgoMIV | GCCGGC | 2 cut(s) | 29, 38 |
| NlaIII | CATG | 6 cut(s) | 284, 521, 596, 902, 920, 1031 |
| NlaIV | GGNNCC | 1 cut(s) | 870 |
| NmuCI | GTSAC | 1 cut(s) | 265 |
| NspI | RCATGY | 3 cut(s) | 284, 596, 902 |
| PagI | TCATGA | 1 cut(s) | 916 |
| PceI | AGGCCT | 2 cut(s) | 386, 700 |
| PciI | ACATGT | 1 cut(s) | 280 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 603 |
| PctI | GAATGC | 1 cut(s) | 736 |
| PdiI | GCCGGC | 2 cut(s) | 31, 40 |
| PdmI | GAANNNNTTC | 1 cut(s) | 581 |
| PfeI | GAWTC | 1 cut(s) | 542 |
| PfoI | TCCNGGA | 1 cut(s) | 103 |
| PinAI | ACCGGT | 1 cut(s) | 58 |
| PkrI | GCNGC | 5 cut(s) | 44, 591, 693, 820, 1087 |
| Ple19I | CGATCG | 1 cut(s) | 325 |
| PleI | GAGTC | 5 cut(s) | 157, 158, 350, 975, 1004 |
| PpsI | GAGTC | 5 cut(s) | 157, 158, 350, 975, 1004 |
| PscI | ACATGT | 1 cut(s) | 280 |
| Psp124BI | GAGCTC | 1 cut(s) | 838 |
| Psp6I | CCWGG | 1 cut(s) | 634 |
| PspGI | CCWGG | 1 cut(s) | 634 |
| PspN4I | GGNNCC | 1 cut(s) | 870 |
| PspPI | GGNCC | 4 cut(s) | 310, 521, 829, 890 |
| PsuI | RGATCY | 2 cut(s) | 73, 373 |
| PvuI | CGATCG | 1 cut(s) | 325 |
| PvuII | CAGCTG | 2 cut(s) | 694, 929 |
| SacI | GAGCTC | 1 cut(s) | 838 |
| SaqAI | TTAA | 3 cut(s) | 183, 531, 602 |
| SatI | GCNGC | 5 cut(s) | 43, 590, 692, 819, 1086 |
| Sau3AI | GATC | 7 cut(s) | 64, 73, 322, 373, 391, 412, 649 |
| Sau96I | GGNCC | 4 cut(s) | 310, 521, 829, 890 |
| SchI | GAGTC | 5 cut(s) | 158, 158, 350, 976, 1004 |
| ScrFI | CCNGG | 4 cut(s) | 105, 396, 397, 636 |
| SduI | GDGCHC | 2 cut(s) | 490, 838 |
| SinI | GGWCC | 4 cut(s) | 310, 521, 829, 890 |
| SmaI | CCCGGG | 1 cut(s) | 397 |
| Sse9I | AATT | 4 cut(s) | 504, 726, 1071, 1112 |
| SseBI | AGGCCT | 2 cut(s) | 386, 700 |
| SsiI | CCGC | 1 cut(s) | 156 |
| SspMI | CTAG | 6 cut(s) | 153, 416, 443, 630, 741, 1064 |
| SstI | GAGCTC | 1 cut(s) | 838 |
| StuI | AGGCCT | 2 cut(s) | 386, 700 |
| StyD4I | CCNGG | 4 cut(s) | 103, 394, 395, 634 |
| StyI | CCWWGG | 2 cut(s) | 366, 645 |
| TaaI | ACNGT | 4 cut(s) | 115, 130, 179, 478 |
| TaiI | ACGT | 3 cut(s) | 87, 880, 1050 |
| TaqI | TCGA | 6 cut(s) | 207, 321, 325, 564, 597, 1013 |
| TaqII | GACCGA | 1 cut(s) | 907 |
| TasI | AATT | 4 cut(s) | 504, 726, 1071, 1112 |
| TfiI | GAWTC | 1 cut(s) | 542 |
| Tru1I | TTAA | 3 cut(s) | 183, 531, 602 |
| Tru9I | TTAA | 3 cut(s) | 183, 531, 602 |
| TseFI | GTSAC | 1 cut(s) | 265 |
| TseI | GCWGC | 5 cut(s) | 42, 589, 691, 818, 1085 |
| Tsp45I | GTSAC | 1 cut(s) | 265 |
| TspDTI | ATGAA | 9 cut(s) | 17, 291, 470, 555, 590, 647, 933, 969, 1016 |
| TspMI | CCCGGG | 1 cut(s) | 395 |
| VneI | GTGCAC | 1 cut(s) | 486 |
| VpaK11BI | GGWCC | 4 cut(s) | 310, 521, 829, 890 |
| XapI | RAATTY | 1 cut(s) | 1071 |
| XceI | RCATGY | 3 cut(s) | 284, 596, 902 |
| XmaI | CCCGGG | 1 cut(s) | 395 |
| XmnI | GAANNNNTTC | 1 cut(s) | 581 |
| XspI | CTAG | 6 cut(s) | 153, 416, 443, 630, 741, 1064 |