FvH4_4g33100
ERF Family

May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
31434660 .. 31436006
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33100.t1

Sequence Viewer

Length: 1134 bp
ATGAAGGTTTCCAAGCACACGATTGTTGCCGGCGAAGCCGGCAGCGTTGAGCTAAGACCGGTTGATCCAGAAGATCTGTATGACGTTTACAAACTGATTTCTCCGGGAGACACAGTTAGGGCTACAACTGTAAGGAAAGTGAAAAGAGAGTCTAGCGGAAGGGACTCTACTTCAGACCGTGTTAAGTTCAATATGGAAATCAAAGTCGAGAAGAAATATGATTATGACAGCAGAAGCGACCTTATTCAGATTTCAGGAAAGAATGTCACTCTCAATGAACATGTAAGGTTAGGAGCATATCATACTTTGGACCTTGCACTCGATCGACCTTTTGTGTTGACAAAGGATGTTTGGGACTCATTGGCCTTGGAGGATCTCAAACAGGCCTCCGATCCCGGGGATAGCGCTGATGATCTAGCTGTGGTGTTGATGGGAGAAGGACTAGCACATATTATGAAAGTTGGTAAAAGAGCCACAGTTACTCGTGCACGAGTTGAGACTTCAATTCCTCGCAAGCATGGACCTTCGGTTAAGGGTTATGAATCGGCTTTGATTGGATTTTTCGAGAGGGCTATGAAGGCTTTCTTGCAGCATGTCGATTTAAGCGTTGTTGGATGTGTTGTGATTGCTAGTCCAGGTTTCACCAAGGATCAGTTTCATAAACACTTGCTGTTGGAAGCAGAAAGAAAGCAGCTGAGGCCTATTATAGAGAACAAATCCAAGATAATTCTTGTGCATTCTAGCTCGGGTTACAAGCATAGTTTGAGGGAGGTTCTTGATGATGAGAAAGTTATGAGTAAGATAAGAGATACTAAAGCAGCAAAAGAGGTCCGAGCTCTCCAAGATTTTTTCAGTATGATGTCCGAGGAACCAGAACGTGCGTGCTATGGACCGAAGCATGTTGAGGTTGCTCATCATGAATATACAGCTGTGCAAACCTTACTGATAACAGATGAACTCTTCAGGAGTCAGAGGCAAAAATATGATGATTTTGTGAAATCAGTCAAGGACTCGAAGGGCATTGTTCATGTATTTTCTTCCTTGCACGTTTCAGGAGAACAACTAGCGCAAATTTCAGGCATTGCTGCAATCCTTCGTGTCCCTCTACCCGAATTAGATGATATAGAGATGTAA

Protein Analysis

378

Amino Acids

42.28

Weight (kDa)

6.75

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pelota_N PF26356 1 - 129 1.4e-36 Pelota N-terminal domain
eRF1_2 PF03464 139 - 269 8.8e-25 eRF1 domain 2
eRF1_3 PF03465 274 - 367 1.3e-22 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AclWI GGATC 4 cut(s) 59, 381, 386, 657
AcsI RAATTY 1 cut(s) 1071
AcuI CTGAAG 2 cut(s) 156, 946
AfeI AGCGCT 1 cut(s) 406
AfiI CCNNNNNNNGG 1 cut(s) 396
AflIII ACRYGT 1 cut(s) 280
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 2 cut(s) 190, 504
AjnI CCWGG 1 cut(s) 634
AluBI AGCT 6 cut(s) 52, 419, 694, 744, 836, 929
AluI AGCT 6 cut(s) 52, 419, 694, 744, 836, 929
Alw21I GWGCWC 2 cut(s) 490, 838
Alw26I GTCTC 2 cut(s) 102, 491
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 4 cut(s) 59, 381, 386, 657
Ama87I CYCGRG 2 cut(s) 395, 745
Aor51HI AGCGCT 1 cut(s) 406
AoxI GGCC 3 cut(s) 363, 384, 698
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 5 cut(s) 42, 589, 691, 818, 1085
ApoI RAATTY 1 cut(s) 1071
AsiGI ACCGGT 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 581
AspLEI GCGC 2 cut(s) 407, 1069
AspS9I GGNCC 4 cut(s) 310, 521, 829, 890
AsuC2I CCSGG 3 cut(s) 105, 396, 397
AsuHPI GGTGA 1 cut(s) 634
AvaI CYCGRG 2 cut(s) 395, 745
AvaII GGWCC 4 cut(s) 310, 521, 829, 890
BaeGI GKGCMC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 838
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BauI CACGAG 2 cut(s) 483, 489
Bbv12I GWGCWC 2 cut(s) 490, 838
BbvCI CCTCAGC 1 cut(s) 695
BbvI GCAGC 5 cut(s) 54, 601, 703, 830, 1072
BccI CCATC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 636
BcnI CCSGG 3 cut(s) 105, 396, 397
BcoDI GTCTC 2 cut(s) 102, 491
BfaI CTAG 6 cut(s) 153, 416, 443, 630, 741, 1064
BfoI RGCGCY 1 cut(s) 408
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 43, 590, 692, 819, 1086
BlsI GCNGC 5 cut(s) 44, 591, 693, 820, 1087
Bme1390I CCNGG 4 cut(s) 105, 396, 397, 636
Bme18I GGWCC 4 cut(s) 310, 521, 829, 890
BmeT110I CYCGRG 2 cut(s) 395, 745
BmgT120I GGNCC 4 cut(s) 310, 521, 829, 890
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 4 cut(s) 105, 396, 397, 636
Bpu10I CCTNAGC 1 cut(s) 695
BpuMI CCSGG 3 cut(s) 105, 396, 397
BsaJI CCNNGG 5 cut(s) 366, 395, 396, 645, 864
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse118I RCCGGY 3 cut(s) 29, 38, 58
Bse3DI GCAATG 1 cut(s) 1080
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 5 cut(s) 366, 395, 396, 645, 864
BseGI GGATG 2 cut(s) 352, 620
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 1 cut(s) 686
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 5 cut(s) 54, 601, 703, 830, 1072
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 365, 386, 700
BshTI ACCGGT 1 cut(s) 58
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 490, 838
BsiHKCI CYCGRG 2 cut(s) 395, 745
BsiSI CCGG 5 cut(s) 30, 39, 59, 104, 396
BslFI GGGAC 3 cut(s) 176, 368, 1085
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 2 cut(s) 102, 491
BsmFI GGGAC 3 cut(s) 176, 368, 1085
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 3 cut(s) 365, 386, 700
BsoBI CYCGRG 2 cut(s) 395, 745
Bsp1286I GDGCHC 2 cut(s) 490, 838
Bsp143I GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
BspACI CCGC 1 cut(s) 156
BspANI GGCC 3 cut(s) 365, 386, 700
BspCNI CTCAG 1 cut(s) 687
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 870
BspPI GGATC 4 cut(s) 59, 381, 386, 657
BsrDI GCAATG 1 cut(s) 1080
BsrFI RCCGGY 3 cut(s) 29, 38, 58
BssAI RCCGGY 3 cut(s) 29, 38, 58
BssECI CCNNGG 5 cut(s) 366, 395, 396, 645, 864
BssMI GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
BssSI CACGAG 2 cut(s) 483, 489
BssT1I CCWWGG 2 cut(s) 366, 645
Bst2BI CACGAG 2 cut(s) 483, 489
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 4 cut(s) 115, 130, 179, 478
Bst6I CTCTTC 1 cut(s) 965
BstC8I GCNNGC 4 cut(s) 31, 40, 515, 883
BstDEI CTNAG 2 cut(s) 53, 695
BstF5I GGATG 2 cut(s) 352, 620
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 2 cut(s) 407, 1069
BstKTI GATC 7 cut(s) 67, 76, 325, 376, 394, 415, 652
BstMAI GTCTC 2 cut(s) 102, 491
BstMBI GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 4 cut(s) 35, 39, 578, 697
BstNI CCWGG 1 cut(s) 636
BstNSI RCATGY 3 cut(s) 284, 596, 902
BstSCI CCNGG 4 cut(s) 103, 394, 395, 634
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 5 cut(s) 54, 601, 703, 830, 1072
BstX2I RGATCY 2 cut(s) 73, 373
BstYI RGATCY 2 cut(s) 73, 373
BsuRI GGCC 3 cut(s) 365, 386, 700
BtsCI GGATG 2 cut(s) 352, 620
Cac8I GCNNGC 4 cut(s) 31, 40, 515, 883
CciI TCATGA 1 cut(s) 916
CfoI GCGC 2 cut(s) 407, 1069
Cfr10I RCCGGY 3 cut(s) 29, 38, 58
Cfr13I GGNCC 4 cut(s) 310, 521, 829, 890
Cfr9I CCCGGG 1 cut(s) 395
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 6 cut(s) 281, 518, 593, 899, 917, 1028
DdeI CTNAG 2 cut(s) 53, 695
DpnI GATC 7 cut(s) 66, 75, 324, 375, 393, 414, 651
DpnII GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
Eam1104I CTCTTC 1 cut(s) 965
EarI CTCTTC 1 cut(s) 965
Ecl136II GAGCTC 1 cut(s) 836
Eco130I CCWWGG 2 cut(s) 366, 645
Eco147I AGGCCT 2 cut(s) 386, 700
Eco24I GRGCYC 1 cut(s) 838
Eco47I GGWCC 4 cut(s) 310, 521, 829, 890
Eco47III AGCGCT 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 156, 946
Eco88I CYCGRG 2 cut(s) 395, 745
EcoICRI GAGCTC 1 cut(s) 836
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 2 cut(s) 366, 645
EcoT38I GRGCYC 1 cut(s) 838
ErhI CCWWGG 2 cut(s) 366, 645
FaeI CATG 6 cut(s) 284, 521, 596, 902, 920, 1031
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 3 cut(s) 176, 368, 1085
FatI CATG 6 cut(s) 280, 517, 592, 898, 916, 1027
Fnu4HI GCNGC 5 cut(s) 43, 590, 692, 819, 1086
FokI GGATG 2 cut(s) 359, 627
FriOI GRGCYC 1 cut(s) 838
Fsp4HI GCNGC 5 cut(s) 43, 590, 692, 819, 1086
FspBI CTAG 6 cut(s) 153, 416, 443, 630, 741, 1064
GlaI GCGC 2 cut(s) 406, 1068
GluI GCNGC 5 cut(s) 43, 590, 692, 819, 1086
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 3 cut(s) 365, 386, 700
HapII CCGG 5 cut(s) 30, 39, 59, 104, 396
HhaI GCGC 2 cut(s) 407, 1069
Hin1II CATG 6 cut(s) 284, 521, 596, 902, 920, 1031
Hin6I GCGC 2 cut(s) 405, 1067
HinP1I GCGC 2 cut(s) 405, 1067
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 6 cut(s) 149, 164, 356, 542, 967, 1010
HpaII CCGG 5 cut(s) 30, 39, 59, 104, 396
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 3 cut(s) 88, 339, 488
Hpy188I TCNGA 6 cut(s) 175, 249, 391, 833, 865, 972
Hpy188III TCNNGA 8 cut(s) 68, 208, 255, 565, 776, 917, 964, 1053
Hpy8I GTNNAC 3 cut(s) 88, 339, 488
HpyAV CCTTC 6 cut(s) 153, 431, 534, 571, 1009, 1103
HpyCH4III ACNGT 4 cut(s) 115, 130, 179, 478
HpyCH4IV ACGT 3 cut(s) 84, 877, 1047
HpyCH4V TGCA 7 cut(s) 317, 488, 589, 736, 934, 1045, 1088
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 39, 578, 697
HpyF3I CTNAG 2 cut(s) 53, 695
HpySE526I ACGT 3 cut(s) 84, 877, 1047
Hsp92II CATG 6 cut(s) 284, 521, 596, 902, 920, 1031
HspAI GCGC 2 cut(s) 405, 1067
KroI GCCGGC 2 cut(s) 29, 38
KroNI GCCGGC 2 cut(s) 31, 40
Kzo9I GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 5 cut(s) 54, 601, 703, 830, 1072
MaeI CTAG 6 cut(s) 153, 416, 443, 630, 741, 1064
MaeII ACGT 3 cut(s) 84, 877, 1047
MaeIII GTNAC 3 cut(s) 265, 478, 749
MalI GATC 7 cut(s) 66, 75, 324, 375, 393, 414, 651
MboI GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
MboII GAAGA 4 cut(s) 83, 223, 952, 1029
MflI RGATCY 2 cut(s) 73, 373
MhlI GDGCHC 2 cut(s) 490, 838
MluCI AATT 4 cut(s) 504, 726, 1071, 1112
MlyI GAGTC 5 cut(s) 158, 158, 350, 976, 1004
MmeI TCCRAC 2 cut(s) 592, 654
MroNI GCCGGC 2 cut(s) 29, 38
MroXI GAANNNNTTC 1 cut(s) 581
MseI TTAA 3 cut(s) 183, 531, 602
MspA1I CMGCKG 2 cut(s) 694, 929
MspI CCGG 5 cut(s) 30, 39, 59, 104, 396
MspR9I CCNGG 4 cut(s) 105, 396, 397, 636
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 4 cut(s) 35, 39, 578, 697
NaeI GCCGGC 2 cut(s) 31, 40
NciI CCSGG 3 cut(s) 105, 396, 397
NdeII GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
NgoMIV GCCGGC 2 cut(s) 29, 38
NlaIII CATG 6 cut(s) 284, 521, 596, 902, 920, 1031
NlaIV GGNNCC 1 cut(s) 870
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 3 cut(s) 284, 596, 902
PagI TCATGA 1 cut(s) 916
PceI AGGCCT 2 cut(s) 386, 700
PciI ACATGT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PctI GAATGC 1 cut(s) 736
PdiI GCCGGC 2 cut(s) 31, 40
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 542
PfoI TCCNGGA 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 5 cut(s) 44, 591, 693, 820, 1087
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 5 cut(s) 157, 158, 350, 975, 1004
PpsI GAGTC 5 cut(s) 157, 158, 350, 975, 1004
PscI ACATGT 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 838
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 870
PspPI GGNCC 4 cut(s) 310, 521, 829, 890
PsuI RGATCY 2 cut(s) 73, 373
PvuI CGATCG 1 cut(s) 325
PvuII CAGCTG 2 cut(s) 694, 929
SacI GAGCTC 1 cut(s) 838
SaqAI TTAA 3 cut(s) 183, 531, 602
SatI GCNGC 5 cut(s) 43, 590, 692, 819, 1086
Sau3AI GATC 7 cut(s) 64, 73, 322, 373, 391, 412, 649
Sau96I GGNCC 4 cut(s) 310, 521, 829, 890
SchI GAGTC 5 cut(s) 158, 158, 350, 976, 1004
ScrFI CCNGG 4 cut(s) 105, 396, 397, 636
SduI GDGCHC 2 cut(s) 490, 838
SinI GGWCC 4 cut(s) 310, 521, 829, 890
SmaI CCCGGG 1 cut(s) 397
Sse9I AATT 4 cut(s) 504, 726, 1071, 1112
SseBI AGGCCT 2 cut(s) 386, 700
SsiI CCGC 1 cut(s) 156
SspMI CTAG 6 cut(s) 153, 416, 443, 630, 741, 1064
SstI GAGCTC 1 cut(s) 838
StuI AGGCCT 2 cut(s) 386, 700
StyD4I CCNGG 4 cut(s) 103, 394, 395, 634
StyI CCWWGG 2 cut(s) 366, 645
TaaI ACNGT 4 cut(s) 115, 130, 179, 478
TaiI ACGT 3 cut(s) 87, 880, 1050
TaqI TCGA 6 cut(s) 207, 321, 325, 564, 597, 1013
TaqII GACCGA 1 cut(s) 907
TasI AATT 4 cut(s) 504, 726, 1071, 1112
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 3 cut(s) 183, 531, 602
Tru9I TTAA 3 cut(s) 183, 531, 602
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 5 cut(s) 42, 589, 691, 818, 1085
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 9 cut(s) 17, 291, 470, 555, 590, 647, 933, 969, 1016
TspMI CCCGGG 1 cut(s) 395
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 4 cut(s) 310, 521, 829, 890
XapI RAATTY 1 cut(s) 1071
XceI RCATGY 3 cut(s) 284, 596, 902
XmaI CCCGGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 581
XspI CTAG 6 cut(s) 153, 416, 443, 630, 741, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.