Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001369

Physical Location & Seq

Genomic Coordinates Forward (+)

22524599 .. 22529099

Gene Structure 4501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAGATTGTTCGGAAGGACTATATTCCCGGCGGACCTGGCAGCGTTAAGATGATACCGCTGGATTCCGATGATTTGTGGTATGCTTATAATTTGATTGCTCCGGGAGACACAGTCATGGCTGTCACTGTTAGGAAAGTTCTGAGAGAAGCGGCTGCTGGTGGAAGAGATGCAGAGCGCGTGAAGCTGAAGTTAGAAATCAAAGTCGAAGAGGTTGCTGATTATGACAAAGTAGGAGCTGTCTTGCGTATACGTGGGAAGAATATCTTGGAGAATGAATATGTAAAGATAGGAGCATTTCACACTTTGGAGCTTGAGCTGCACCGACCTTTTGTGTTAAGAAAGGATGTCTGGGACTCATTGGCCTTGCACGAACTCCATCAAGCTTCCGATCCTGGTGCAAGTGCTGATCTAGCTGTAATTTTAATGCAAGAAGGATTAGCACATATTCTCCTTGTTGGTAAAAGTATGACAATTACTCGTTCACGAATAGAAACTTCGATTCCTCGCAAGCACGGACCTGGGATTGCAGGTTATGAATCGGCTTTGAATAAATTCTTCGAGAATGTGTTACAGGCTTTCTTGAAGCACGTTGATTTCAGTGTTGTTCGGTGTGCTGTAATTGCAAGTCCAGGTTTCACAAAGGATCAATTTCATCGTCACCTATTATTGGAGGCAGAAAGAAAACAGCTGAGAACTATTATTGAGAACAAGTCGCGGATAATTCTTGTGCACACAAGCTCGGGTTACAAGCATAGCTTAAGGGAGGTTCTGGATGCTCCAAACGTTATGAATATGATAAAAGATACTCAAGCAGCACAAGAGGTTAGAGTTCTGCAAGATTTCTTCGGCATGCTTTCAAATGATCCAGATCGTGCATGCTATGGACCGAAGCATGTCGAAGTTGCTCATGAACGAATGGCTATCCAAACCCTTTTGATAACAGATGAACTCTTCAGGTGCTGTGGGTACACGAAAAACGGAGTGTTCCGAGTTGTGGTTGGTCCGAGAACTTTTGCCACCTGGTGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0019222 GO:0019439 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070651 GO:0070966 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

345

Amino Acids

38.72

Weight (kDa)

8.67

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pelota_N	PF26356	1 - 129	4.2e-40	Pelota N-terminal domain
eRF1_2	PF03464	138 - 269	7.7e-30	eRF1 domain 2
eRF1_3	PF03465	273 - 322	1.1e-11	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58390 AT4G27650 AT4G27650 AT4G27650
fragaria_vesca	FvH4_4g33100 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g17270
malus_domestica	MD04G1241200.v1.1 MD12G1258200.v1.1
prunus_persica	Prupe.6G358700_v2.0.a1 Prupe.6G358700_v2.0.a1 Prupe.7G122700_v2.0.a1
pyrus_communis	pycom04g21290 pycom12g23680 pycom14g09460
rosa_chinensis	RchiOBHm_Chr3g0448271 RchiOBHm_Chr3g0471381 RchiOBHm_Chr4g0442151
rosa_laevigata	RLG00000006036 RLG00000024182 RLG00000025931
rosa_multiflora	Rmu_sc0006582.1_g000016 Rmu_sc0010284.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383060 Rroxscaffold_6G00410020 Rroxscaffold_6G00426420
rosa_rugosa	Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug03G0117400 Rorug04G0339300
rosa_samantha	Rh3AG009500 Rh3AG167200 Rh3AG167300 Rh3BG009100 Rh3BG192700 Rh3CG009100 Rh3CG183000 Rh3CG183100 Rh3DG009700 Rh3DG182800 Rh3DG182900 Rh4BG404400 Rh4CG419400 Rh4DG397500
rosa_wichuraiana	Rw3G000770 Rw3G015750 Rw4G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	2 cut(s)	180, 718
AciI	CCGC	4 cut(s)	33, 59, 152, 718
AclI	AACGTT	1 cut(s)	786
AclWI	GGATC	3 cut(s)	386, 654, 860
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	2 cut(s)	209, 940
AdeI	CACNNNGTG	1 cut(s)	1026
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	670, 997
AflII	CTTAAG	1 cut(s)	760
AgsI	TTSAA	3 cut(s)	550, 586, 861
AjnI	CCWGG	5 cut(s)	37, 394, 520, 631, 1022
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	9 cut(s)	187, 239, 313, 319, 386, 416, 691, 741, 759
AluI	AGCT	9 cut(s)	187, 239, 313, 319, 386, 416, 691, 741, 759
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	731
AlwI	GGATC	3 cut(s)	386, 654, 860
AlwNI	CAGNNNCTG	1 cut(s)	963
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	1 cut(s)	363
ApaLI	GTGCAC	1 cut(s)	731
ApeKI	GCWGC	4 cut(s)	42, 155, 319, 815
ApoI	RAATTY	1 cut(s)	554
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	4 cut(s)	35, 518, 887, 1004
AsuC2I	CCSGG	2 cut(s)	30, 105
AsuHPI	GGTGA	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	742
AvaII	GGWCC	4 cut(s)	35, 518, 887, 1004
BaeGI	GKGCMC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	54, 142, 306, 827
BccI	CCATC	1 cut(s)	387
BcgI	CGANNNNNNTGC	4 cut(s)	197, 231, 380, 414
BciT130I	CCWGG	5 cut(s)	39, 396, 522, 633, 1024
BcnI	CCSGG	2 cut(s)	30, 105
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	413
BfrI	CTTAAG	1 cut(s)	760
BfuAI	ACCTGC	1 cut(s)	521
BisI	GCNGC	5 cut(s)	43, 153, 156, 320, 816
BlsI	GCNGC	5 cut(s)	44, 154, 157, 321, 817
Bme1390I	CCNGG	7 cut(s)	30, 39, 105, 396, 522, 633, 1024
Bme18I	GGWCC	4 cut(s)	35, 518, 887, 1004
BmeT110I	CYCGRG	1 cut(s)	742
BmgT120I	GGNCC	4 cut(s)	35, 518, 887, 1004
BmrFI	CCNGG	7 cut(s)	30, 39, 105, 396, 522, 633, 1024
BmsI	GCATC	2 cut(s)	160, 766
BpuEI	CTTGAG	2 cut(s)	335, 795
BpuMI	CCSGG	2 cut(s)	30, 105
BsaAI	YACGTR	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	1 cut(s)	521
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 435, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 997
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	5 cut(s)	39, 396, 522, 633, 1024
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	2 cut(s)	352, 781
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	2 cut(s)	670, 997
BseMII	CTCAG	2 cut(s)	134, 683
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	4 cut(s)	54, 142, 306, 827
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	180, 718
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	30, 104
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	670, 997
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	742
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	5 cut(s)	391, 409, 646, 865, 871
BspACI	CCGC	4 cut(s)	33, 59, 152, 718
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	2 cut(s)	135, 684
BspFNI	CGCG	2 cut(s)	180, 718
BspHI	TCATGA	1 cut(s)	910
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	386, 654, 860
BspTI	CTTAAG	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	521
BssMI	GATC	5 cut(s)	391, 409, 646, 865, 871
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	5 cut(s)	39, 396, 522, 633, 1024
Bst4CI	ACNGT	2 cut(s)	115, 130
Bst6I	CTCTTC	3 cut(s)	160, 204, 959
BstAFI	CTTAAG	1 cut(s)	760
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	512, 854, 880
BstDEI	CTNAG	2 cut(s)	143, 692
BstF5I	GGATG	2 cut(s)	352, 781
BstFNI	CGCG	2 cut(s)	180, 718
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	5 cut(s)	394, 412, 649, 868, 874
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	5 cut(s)	391, 409, 646, 865, 871
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 184, 319, 413, 623
BstNI	CCWGG	5 cut(s)	39, 396, 522, 633, 1024
BstNSI	RCATGY	3 cut(s)	856, 882, 899
BstSCI	CCNGG	7 cut(s)	28, 37, 103, 394, 520, 631, 1022
BstSLI	GKGCMC	1 cut(s)	735
BstUI	CGCG	2 cut(s)	180, 718
BstV1I	GCAGC	4 cut(s)	54, 142, 306, 827
BstZ17I	GTATAC	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	352, 781
BtsIMutI	CAGTG	2 cut(s)	126, 607
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	512, 854, 880
CaiI	CAGNNNCTG	1 cut(s)	963
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	4 cut(s)	35, 518, 887, 1004
CsiI	ACCWGGT	1 cut(s)	1022
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	5 cut(s)	118, 853, 879, 896, 911
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	2 cut(s)	143, 692
DpnI	GATC	5 cut(s)	393, 411, 648, 867, 873
DpnII	GATC	5 cut(s)	391, 409, 646, 865, 871
DraIII	CACNNNGTG	1 cut(s)	1026
Eam1104I	CTCTTC	3 cut(s)	160, 204, 959
EarI	CTCTTC	3 cut(s)	160, 204, 959
EciI	GGCGGA	1 cut(s)	48
Eco47I	GGWCC	4 cut(s)	35, 518, 887, 1004
Eco57I	CTGAAG	2 cut(s)	209, 940
Eco88I	CYCGRG	1 cut(s)	742
EcoRII	CCWGG	5 cut(s)	37, 394, 520, 631, 1022
FaeI	CATG	5 cut(s)	121, 856, 882, 899, 914
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 743, 775
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	5 cut(s)	117, 852, 878, 895, 910
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	5 cut(s)	43, 153, 156, 320, 816
FokI	GGATG	2 cut(s)	359, 788
Fsp4HI	GCNGC	5 cut(s)	43, 153, 156, 320, 816
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	5 cut(s)	43, 153, 156, 320, 816
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	2 cut(s)	30, 104
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	121, 856, 882, 899, 914
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	4 cut(s)	65, 356, 502, 539
HpaII	CCGG	2 cut(s)	30, 104
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	4 cut(s)	251, 485, 733, 972
Hpy188I	TCNGA	6 cut(s)	15, 70, 144, 391, 992, 1008
Hpy188III	TCNNGA	6 cut(s)	486, 562, 583, 773, 869, 911
Hpy8I	GTNNAC	4 cut(s)	251, 485, 733, 972
HpyAV	CCTTC	2 cut(s)	10, 428
HpyCH4III	ACNGT	2 cut(s)	115, 130
HpyCH4IV	ACGT	3 cut(s)	253, 591, 786
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 184, 319, 413, 623
HpyF3I	CTNAG	2 cut(s)	143, 692
HpySE526I	ACGT	3 cut(s)	253, 591, 786
Hsp92II	CATG	5 cut(s)	121, 856, 882, 899, 914
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	5 cut(s)	391, 409, 646, 865, 871
LmnI	GCTCC	5 cut(s)	106, 236, 293, 310, 784
Lsp1109I	GCAGC	4 cut(s)	54, 142, 306, 827
LweI	GCATC	2 cut(s)	160, 766
MabI	ACCWGGT	1 cut(s)	1022
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	3 cut(s)	253, 591, 786
MaeIII	GTNAC	5 cut(s)	124, 570, 659, 746, 1028
MalI	GATC	5 cut(s)	393, 411, 648, 867, 873
MboI	GATC	5 cut(s)	391, 409, 646, 865, 871
MboII	GAAGA	7 cut(s)	16, 177, 221, 271, 550, 838, 946
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	7 cut(s)	91, 420, 474, 554, 621, 650, 723
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	5 cut(s)	205, 516, 667, 760, 817
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	4 cut(s)	48, 338, 425, 761
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	61, 691
MspCI	CTTAAG	1 cut(s)	760
MspI	CCGG	2 cut(s)	30, 104
MspR9I	CCNGG	7 cut(s)	30, 39, 105, 396, 522, 633, 1024
MvaI	CCWGG	5 cut(s)	39, 396, 522, 633, 1024
MvnI	CGCG	2 cut(s)	180, 718
MwoI	GCNNNNNNNGC	5 cut(s)	39, 184, 319, 413, 623
NciI	CCSGG	2 cut(s)	30, 105
NdeII	GATC	5 cut(s)	391, 409, 646, 865, 871
NlaIII	CATG	5 cut(s)	121, 856, 882, 899, 914
NmuCI	GTSAC	2 cut(s)	124, 659
NspI	RCATGY	3 cut(s)	856, 882, 899
PaeI	GCATGC	2 cut(s)	856, 882
PagI	TCATGA	1 cut(s)	910
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	3 cut(s)	65, 502, 539
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	5 cut(s)	44, 154, 157, 321, 817
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	90
Psp1406I	AACGTT	1 cut(s)	786
Psp6I	CCWGG	5 cut(s)	37, 394, 520, 631, 1022
PspGI	CCWGG	5 cut(s)	37, 394, 520, 631, 1022
PspPI	GGNCC	4 cut(s)	35, 518, 887, 1004
PstNI	CAGNNNCTG	1 cut(s)	963
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	691
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	48, 338, 425, 761
SatI	GCNGC	5 cut(s)	43, 153, 156, 320, 816
Sau3AI	GATC	5 cut(s)	391, 409, 646, 865, 871
Sau96I	GGNCC	4 cut(s)	35, 518, 887, 1004
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	7 cut(s)	30, 39, 105, 396, 522, 633, 1024
SduI	GDGCHC	1 cut(s)	735
SexAI	ACCWGGT	1 cut(s)	1022
SfaNI	GCATC	2 cut(s)	160, 766
SinI	GGWCC	4 cut(s)	35, 518, 887, 1004
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	3 cut(s)	314, 760, 810
SmoI	CTYRAG	3 cut(s)	314, 760, 810
SphI	GCATGC	2 cut(s)	856, 882
Sse9I	AATT	7 cut(s)	91, 420, 474, 554, 621, 650, 723
SsiI	CCGC	4 cut(s)	33, 59, 152, 718
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	7 cut(s)	28, 37, 103, 394, 520, 631, 1022
TaaI	ACNGT	2 cut(s)	115, 130
TaiI	ACGT	3 cut(s)	256, 594, 789
TaqI	TCGA	4 cut(s)	207, 500, 561, 900
TaqII	GACCGA	1 cut(s)	904
TasI	AATT	7 cut(s)	91, 420, 474, 554, 621, 650, 723
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	65, 502, 539
Tru1I	TTAA	4 cut(s)	48, 338, 425, 761
Tru9I	TTAA	4 cut(s)	48, 338, 425, 761
TscAI	CASTG	2 cut(s)	133, 607
TseFI	GTSAC	2 cut(s)	124, 659
TseI	GCWGC	4 cut(s)	42, 155, 319, 815
Tsp45I	GTSAC	2 cut(s)	124, 659
TspDTI	ATGAA	7 cut(s)	17, 291, 552, 644, 806, 927, 963
TspGWI	ACGGA	2 cut(s)	531, 996
TspRI	CASTG	2 cut(s)	133, 607
Tth111I	GACNNNGTC	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	760
VneI	GTGCAC	1 cut(s)	731
VpaK11BI	GGWCC	4 cut(s)	35, 518, 887, 1004
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	3 cut(s)	856, 882, 899
XmiI	GTMKAC	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.