Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001369

Physical Location & Seq

Genomic Coordinates Reverse (-)

47160591 .. 47167398

Gene Structure 6808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAGATTGTTCACAAGGATTACGTTCCAGGCGGACCCGGCAAAGTCAAGATGGTGCCGGCTGATTCCGATGATCTGTGGTATGTGTACAATTTGATAGCTCCTGGAGATAGTGTTATTGCTGTCACTGTGAGGAAAGTTCTAAGAGAAGGGGCTAGCGGTGGAAGAGATGCAGAGCGTGTGAAGCTCAAGCTAGAAATAAAAGTTGAGGAGGTTGCTGATTATGATAAAGTAGGCAATGTCTTGCGTATACGTGGAAAGAATATTCTTGAGAATGAACATGTAAAGATAGGAGCATATCATACTCTGGAACTTGAGCCTCACCGACCTTTTGTTTTAAAAAAGGATGTGTGGGACTCACTGGCCTTGCACGAACTCAATCAAGCCTGTGATCCTGCGGCGAGTGCTGACCTAGCTGTGGTAATAATGCAAGAAGGATTAGCACATATTCTCCTTGTTGGAAGAAGTATGACAATAACTCGGTCACGAATAGAAACTTCAATTCCTCGCAAGCATGGACCTTCAGTTGCAGGTTATGAGAAAGCTTTGAGCAAGTTCTTTGAAAATGTGTTACAGGCTTTCTTGAAGAATGTTGATTTCAGTGTTGTTCGCTGTGCCGTGATTGCAAGTCCAGGTTTCACAAAGGATCAGTTTCATCGTCACTTATTGTTGGAAGCAGAGAGAAAACAGCTGAGGCCTATCATTGAGAACAAGTCACGGATTCTTCTTGTGCATACAACCTCGGGTTACAAGCATAGTTTGAGGGAGGTTCTGGATGCTCCAAATGTTATGAATATGATAAAAGATACTAAAGCAGCACAAGAGGTCCGGGCTCTCCAAGATTTCTTCAGTATGCTTTCAAATGTCAGGAGCCACATCGTGCATGCTATGGACCAAAGCATGTTGAGGTTGCTCATGAACAAATGGCCGTGCAAACCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0019222 GO:0019439 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070651 GO:0070966 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

314

Amino Acids

35.4

Weight (kDa)

9.27

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pelota_N	PF26356	1 - 130	6.9e-42	Pelota N-terminal domain
eRF1_2	PF03464	138 - 269	1.3e-29	eRF1 domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58390 AT4G27650 AT4G27650 AT4G27650
fragaria_vesca	FvH4_4g33100 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g00790 FvH4_6g17270
malus_domestica	MD04G1241200.v1.1 MD12G1258200.v1.1
prunus_persica	Prupe.6G358700_v2.0.a1 Prupe.6G358700_v2.0.a1 Prupe.7G122700_v2.0.a1
pyrus_communis	pycom04g21290 pycom12g23680 pycom14g09460
rosa_chinensis	RchiOBHm_Chr3g0448271 RchiOBHm_Chr3g0471381 RchiOBHm_Chr4g0442151
rosa_laevigata	RLG00000006036 RLG00000024182 RLG00000025931
rosa_multiflora	Rmu_sc0006582.1_g000016 Rmu_sc0010284.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383060 Rroxscaffold_6G00410020 Rroxscaffold_6G00426420
rosa_rugosa	Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug02G0610000 Rorug03G0117400 Rorug04G0339300
rosa_samantha	Rh3AG009500 Rh3AG167200 Rh3AG167300 Rh3BG009100 Rh3BG192700 Rh3CG009100 Rh3CG183000 Rh3CG183100 Rh3DG009700 Rh3DG182800 Rh3DG182900 Rh4BG404400 Rh4CG419400 Rh4DG397500
rosa_wichuraiana	Rw3G000770 Rw3G015750 Rw4G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	3 cut(s)	33, 159, 398
AclWI	GGATC	2 cut(s)	386, 654
AcoI	YGGCCR	1 cut(s)	926
AcuI	CTGAAG	2 cut(s)	507, 832
AdeI	CACNNNGTG	1 cut(s)	880
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	501, 563, 586, 861
AjnI	CCWGG	3 cut(s)	28, 103, 631
AluBI	AGCT	6 cut(s)	101, 187, 193, 416, 545, 691
AluI	AGCT	6 cut(s)	101, 187, 193, 416, 545, 691
AlwI	GGATC	2 cut(s)	386, 654
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	3 cut(s)	363, 695, 926
ApeKI	GCWGC	1 cut(s)	815
AspS9I	GGNCC	4 cut(s)	35, 518, 826, 892
AsuC2I	CCSGG	2 cut(s)	39, 830
AsuHPI	GGTGA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	742
AvaII	GGWCC	4 cut(s)	35, 518, 826, 892
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	835
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	827
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	602, 913
BciT130I	CCWGG	3 cut(s)	30, 105, 633
BcnI	CCSGG	2 cut(s)	39, 830
BfaI	CTAG	3 cut(s)	156, 194, 413
BfuAI	ACCTGC	1 cut(s)	521
BisI	GCNGC	2 cut(s)	399, 816
BlsI	GCNGC	2 cut(s)	400, 817
Bme1390I	CCNGG	5 cut(s)	30, 39, 105, 633, 830
Bme18I	GGWCC	4 cut(s)	35, 518, 826, 892
BmeT110I	CYCGRG	1 cut(s)	742
BmgT120I	GGNCC	4 cut(s)	35, 518, 826, 892
BmiI	GGNNCC	3 cut(s)	37, 57, 872
BmrFI	CCNGG	5 cut(s)	30, 39, 105, 633, 830
BmsI	GCATC	2 cut(s)	160, 766
BmtI	GCTAGC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	3 cut(s)	173, 290, 335
BpuMI	CCSGG	2 cut(s)	39, 830
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	741
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	3 cut(s)	30, 105, 633
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	2 cut(s)	352, 781
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	827
BshFI	GGCC	3 cut(s)	365, 697, 928
BshNI	GGYRCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	3 cut(s)	39, 59, 829
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	365, 697, 928
BsoBI	CYCGRG	1 cut(s)	742
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	73, 391, 646
BspACI	CCGC	3 cut(s)	33, 159, 398
BspANI	GGCC	3 cut(s)	365, 697, 928
BspCNI	CTCAG	1 cut(s)	684
BspHI	TCATGA	1 cut(s)	915
BspLI	GGNNCC	3 cut(s)	37, 57, 872
BspMI	ACCTGC	1 cut(s)	521
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	386, 654
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	3 cut(s)	73, 391, 646
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	3 cut(s)	30, 105, 633
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	60, 157, 512, 885
BstDEI	CTNAG	2 cut(s)	143, 692
BstF5I	GGATG	2 cut(s)	352, 781
BstKTI	GATC	3 cut(s)	76, 394, 649
BstMBI	GATC	3 cut(s)	73, 391, 646
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 184, 404, 413, 623
BstNI	CCWGG	3 cut(s)	30, 105, 633
BstNSI	RCATGY	3 cut(s)	284, 887, 904
BstSCI	CCNGG	5 cut(s)	28, 37, 103, 631, 828
BstV1I	GCAGC	1 cut(s)	827
BstZ17I	GTATAC	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	365, 697, 928
BtsCI	GGATG	2 cut(s)	352, 781
BtsIMutI	CAGTG	3 cut(s)	126, 359, 607
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	4 cut(s)	60, 157, 512, 885
CciI	TCATGA	1 cut(s)	915
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	4 cut(s)	35, 518, 826, 892
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	5 cut(s)	281, 515, 884, 901, 916
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	143, 692
DpnI	GATC	3 cut(s)	75, 393, 648
DpnII	GATC	3 cut(s)	73, 391, 646
DraI	TTTAAA	1 cut(s)	339
DraIII	CACNNNGTG	1 cut(s)	880
EaeI	YGGCCR	1 cut(s)	926
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	835
Eco47I	GGWCC	4 cut(s)	35, 518, 826, 892
Eco57I	CTGAAG	2 cut(s)	507, 832
Eco88I	CYCGRG	1 cut(s)	742
EcoRII	CCWGG	3 cut(s)	28, 103, 631
EcoT38I	GRGCYC	1 cut(s)	835
FaeI	CATG	5 cut(s)	284, 518, 887, 904, 919
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	5 cut(s)	280, 514, 883, 900, 915
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	399, 816
FokI	GGATG	2 cut(s)	359, 788
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	2 cut(s)	399, 816
FspBI	CTAG	3 cut(s)	156, 194, 413
GluI	GCNGC	2 cut(s)	399, 816
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	365, 697, 928
HapII	CCGG	3 cut(s)	39, 59, 829
Hin1II	CATG	5 cut(s)	284, 518, 887, 904, 919
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	3 cut(s)	65, 356, 721
HpaII	CCGG	3 cut(s)	39, 59, 829
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	13, 88, 251
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	8 cut(s)	49, 269, 308, 486, 583, 773, 868, 916
Hpy8I	GTNNAC	3 cut(s)	13, 88, 251
HpyAV	CCTTC	3 cut(s)	143, 428, 531
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	24, 253
HpyCH4V	TGCA	8 cut(s)	173, 370, 430, 530, 626, 733, 883, 933
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 184, 404, 413, 623
HpyF3I	CTNAG	2 cut(s)	143, 692
HpySE526I	ACGT	2 cut(s)	24, 253
Hsp92II	CATG	5 cut(s)	284, 518, 887, 904, 919
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	73, 391, 646
LmnI	GCTCC	4 cut(s)	106, 293, 784, 870
Lsp1109I	GCAGC	1 cut(s)	827
LweI	GCATC	2 cut(s)	160, 766
MaeI	CTAG	3 cut(s)	156, 194, 413
MaeII	ACGT	2 cut(s)	24, 253
MaeIII	GTNAC	6 cut(s)	124, 483, 570, 659, 714, 746
MalI	GATC	3 cut(s)	75, 393, 648
MboI	GATC	3 cut(s)	73, 391, 646
MboII	GAAGA	6 cut(s)	16, 177, 474, 598, 716, 838
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	2 cut(s)	91, 501
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	439, 651
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	691
MspI	CCGG	3 cut(s)	39, 59, 829
MspR9I	CCNGG	5 cut(s)	30, 39, 105, 633, 830
MvaI	CCWGG	3 cut(s)	30, 105, 633
MwoI	GCNNNNNNNGC	5 cut(s)	39, 184, 404, 413, 623
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	2 cut(s)	39, 830
NdeII	GATC	3 cut(s)	73, 391, 646
NgoMIV	GCCGGC	1 cut(s)	58
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	284, 518, 887, 904, 919
NlaIV	GGNNCC	3 cut(s)	37, 57, 872
NmuCI	GTSAC	4 cut(s)	124, 483, 659, 714
NspI	RCATGY	3 cut(s)	284, 887, 904
PaeI	GCATGC	1 cut(s)	887
PagI	TCATGA	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	697
PciI	ACATGT	1 cut(s)	280
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	65, 721
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	400, 817
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	254
PscI	ACATGT	1 cut(s)	280
Psp6I	CCWGG	3 cut(s)	28, 103, 631
PspGI	CCWGG	3 cut(s)	28, 103, 631
PspN4I	GGNNCC	3 cut(s)	37, 57, 872
PspPI	GGNCC	4 cut(s)	35, 518, 826, 892
PvuII	CAGCTG	1 cut(s)	691
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	2 cut(s)	399, 816
Sau3AI	GATC	3 cut(s)	73, 391, 646
Sau96I	GGNCC	4 cut(s)	35, 518, 826, 892
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	5 cut(s)	30, 39, 105, 633, 830
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	2 cut(s)	160, 766
SinI	GGWCC	4 cut(s)	35, 518, 826, 892
SmlI	CTYRAG	3 cut(s)	188, 269, 314
SmoI	CTYRAG	3 cut(s)	188, 269, 314
SphI	GCATGC	1 cut(s)	887
Sse9I	AATT	2 cut(s)	91, 501
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	3 cut(s)	33, 159, 398
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	156, 194, 413
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	5 cut(s)	28, 37, 103, 631, 828
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	27, 256
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	2 cut(s)	91, 501
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	65, 721
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	3 cut(s)	133, 366, 607
TseFI	GTSAC	4 cut(s)	124, 483, 659, 714
TseI	GCWGC	1 cut(s)	815
Tsp45I	GTSAC	4 cut(s)	124, 483, 659, 714
TspDTI	ATGAA	5 cut(s)	17, 291, 644, 806, 932
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	133, 366, 607
VpaK11BI	GGWCC	4 cut(s)	35, 518, 826, 892
XceI	RCATGY	3 cut(s)	284, 887, 904
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	3 cut(s)	156, 194, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.