MD04G1241200.v1.1
ERF Family

May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
31833041 .. 31837724
4684 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1241200.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGAAGATTGTTCGGAAGGACTATATTCCCGGCGGACCCGGCAGCGTTAAGATGATACCGCTGGATTCCGATGATTTGTGGTATGCTTATAATTTGATTGCTCCGGGAGACACAGTCATGGCTGTCACTGTTAGGAAAGTTCTGAGAGAAGCGGCTGCTGGTGGAAGAGATTCAGAGCGCGTGAAGCTGAAGTTAGAAATCAAAGTCGAAGAGGTTGCTGATTATGACAAAGTAGGAGCTGTCTTGCGTATACGTGGGAAGAATATCCTGGAGAATGAACATGTAAAGATAGGAGCATTTCACACTTTGGAGCTTGAGCTGCACCGACCTTTTGTGTTAAGAAAGGATGTCTGGGACTCATTGGCCTTGCACGAACTCCGTCAAGCTTCCGATCCTGGTGCAAGTGCTGATCTAGCTGTAATTTTAATGCAAGAAGGATTAGCACATATTCTCCTTATTGGTAAAAGTATGACAATTACTCGTTCACGAATAGAAACTTCAATTCCTCGCAAGCACGGACCTGGGATTGCAGGTTATGAATCGGCTTTGAATAAATTCTTTGAGAATGTGTTACAGGCTTTCTTGAAGCACGTTGATTTCAGTGTTGTTCGGTGTGCTGTGATTGCAAGTCCAGGTTTCACAAAGGATCAATTTCATCGTCACCTATTATTGGAGGCAGAGAGAAAACAGCTGAGAAATATTATTGAGAACAAGTCGCGGATAATTCTTGTGCACACAAGCTCAGGTTACAAGCATAGCTTAAGGGAGGTTCTGGATGCTCCAAATGTTATGAATATGATAAAAGATACTCAAGCAGCACAAGAGGTTCGAGTTCTGCAAGATTTCTTCGGCATGCTTTCAAATGATCCAGATCGTGCATGCTATGGACCGAAGCATGTTGAAGTTGCTCATGAACGAATGGCTATCCAAACCCTTTTGATAACAGATGAACTCTTCAGGAATGCCGATGTTGTAGCGAGGCAAAGGTATGCCAATCTGGTGAAATCGGTGAAGGATTCAGGGGGCACTGTTCATATATTTTCTTCTTTGCATGTTTCAGGAGAACAACTGGCACAAATAACTGGCATTGCTGCAATCCTTCGTTTCCCTCTACCCGACCTGGACGATATCGAAATGTAA

Protein Analysis

380

Amino Acids

42.4

Weight (kDa)

7.29

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pelota_N PF26356 1 - 129 1.3e-40 Pelota N-terminal domain
eRF1_2 PF03464 138 - 269 8.4e-30 eRF1 domain 2
eRF1_3 PF03465 273 - 371 2.4e-28 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 521
AccI GTMKAC 1 cut(s) 250
AccII CGCG 2 cut(s) 180, 718
AciI CCGC 4 cut(s) 33, 59, 152, 718
AclWI GGATC 3 cut(s) 386, 654, 860
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 2 cut(s) 209, 940
AfiI CCNNNNNNNGG 1 cut(s) 670
AflII CTTAAG 1 cut(s) 760
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 501, 550, 586, 861, 902
AjnI CCWGG 5 cut(s) 267, 394, 520, 631, 1119
AluBI AGCT 9 cut(s) 187, 239, 313, 319, 386, 416, 691, 741, 759
AluI AGCT 9 cut(s) 187, 239, 313, 319, 386, 416, 691, 741, 759
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 731
AlwI GGATC 3 cut(s) 386, 654, 860
AoxI GGCC 1 cut(s) 363
ApaLI GTGCAC 1 cut(s) 731
ApeKI GCWGC 5 cut(s) 42, 155, 319, 815, 1091
ApoI RAATTY 1 cut(s) 554
Asp700I GAANNNNTTC 2 cut(s) 169, 554
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 3 cut(s) 35, 518, 887
AsuC2I CCSGG 3 cut(s) 30, 39, 105
AsuHPI GGTGA 3 cut(s) 653, 1012, 1021
AvaII GGWCC 3 cut(s) 35, 518, 887
BaeGI GKGCMC 2 cut(s) 735, 1028
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 5 cut(s) 54, 142, 306, 827, 1078
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 380, 414
BciT130I CCWGG 5 cut(s) 269, 396, 522, 633, 1121
BcnI CCSGG 3 cut(s) 30, 39, 105
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 413
BfrI CTTAAG 1 cut(s) 760
BfuAI ACCTGC 1 cut(s) 521
BisI GCNGC 6 cut(s) 43, 153, 156, 320, 816, 1092
BlsI GCNGC 6 cut(s) 44, 154, 157, 321, 817, 1093
Bme1390I CCNGG 8 cut(s) 30, 39, 105, 269, 396, 522, 633, 1121
Bme18I GGWCC 3 cut(s) 35, 518, 887
BmgT120I GGNCC 3 cut(s) 35, 518, 887
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 8 cut(s) 30, 39, 105, 269, 396, 522, 633, 1121
BmsI GCATC 1 cut(s) 766
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 742
BpuEI CTTGAG 2 cut(s) 335, 795
BpuMI CCSGG 3 cut(s) 30, 39, 105
BsaAI YACGTR 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 870
BsaJI CCNNGG 1 cut(s) 521
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 435, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 2 cut(s) 1074, 1087
Bse3DI GCAATG 1 cut(s) 1086
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 5 cut(s) 269, 396, 522, 633, 1121
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 2 cut(s) 352, 781
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 1086
BseMII CTCAG 3 cut(s) 134, 683, 756
BseNI ACTGG 2 cut(s) 1074, 1087
BseSI GKGCMC 2 cut(s) 735, 1028
BseXI GCAGC 5 cut(s) 54, 142, 306, 827, 1078
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 180, 718
BshFI GGCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 3 cut(s) 30, 39, 104
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 735, 1028
Bsp143I GATC 5 cut(s) 391, 409, 646, 865, 871
BspACI CCGC 4 cut(s) 33, 59, 152, 718
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 3 cut(s) 135, 684, 755
BspFNI CGCG 2 cut(s) 180, 718
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 3 cut(s) 386, 654, 860
BspTI CTTAAG 1 cut(s) 760
BsrDI GCAATG 1 cut(s) 1086
BsrI ACTGG 2 cut(s) 1074, 1087
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 5 cut(s) 391, 409, 646, 865, 871
BssNAI GTATAC 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 251
Bst2UI CCWGG 5 cut(s) 269, 396, 522, 633, 1121
Bst4CI ACNGT 3 cut(s) 115, 130, 1030
Bst6I CTCTTC 3 cut(s) 160, 204, 959
BstAFI CTTAAG 1 cut(s) 760
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 512, 854, 880
BstDEI CTNAG 3 cut(s) 143, 692, 742
BstF5I GGATG 2 cut(s) 352, 781
BstFNI CGCG 2 cut(s) 180, 718
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 5 cut(s) 394, 412, 649, 868, 874
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 5 cut(s) 391, 409, 646, 865, 871
BstMWI GCNNNNNNNGC 5 cut(s) 39, 184, 319, 413, 623
BstNI CCWGG 5 cut(s) 269, 396, 522, 633, 1121
BstNSI RCATGY 5 cut(s) 284, 856, 882, 899, 1055
BstSCI CCNGG 8 cut(s) 28, 37, 103, 267, 394, 520, 631, 1119
BstSLI GKGCMC 2 cut(s) 735, 1028
BstUI CGCG 2 cut(s) 180, 718
BstV1I GCAGC 5 cut(s) 54, 142, 306, 827, 1078
BstZ17I GTATAC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 2 cut(s) 352, 781
BtsIMutI CAGTG 3 cut(s) 126, 607, 1026
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 3 cut(s) 512, 854, 880
CciI TCATGA 1 cut(s) 910
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 3 cut(s) 35, 518, 887
CviAII CATG 7 cut(s) 118, 281, 853, 879, 896, 911, 1052
DdeI CTNAG 3 cut(s) 143, 692, 742
DpnI GATC 5 cut(s) 393, 411, 648, 867, 873
DpnII GATC 5 cut(s) 391, 409, 646, 865, 871
Eam1104I CTCTTC 3 cut(s) 160, 204, 959
EarI CTCTTC 3 cut(s) 160, 204, 959
EciI GGCGGA 1 cut(s) 48
Eco32I GATATC 1 cut(s) 1129
Eco47I GGWCC 3 cut(s) 35, 518, 887
Eco57I CTGAAG 2 cut(s) 209, 940
EcoRII CCWGG 5 cut(s) 267, 394, 520, 631, 1119
EcoRV GATATC 1 cut(s) 1129
FaeI CATG 7 cut(s) 121, 284, 856, 882, 899, 914, 1055
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 1 cut(s) 368
FatI CATG 7 cut(s) 117, 280, 852, 878, 895, 910, 1051
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 6 cut(s) 43, 153, 156, 320, 816, 1092
FokI GGATG 2 cut(s) 359, 788
Fsp4HI GCNGC 6 cut(s) 43, 153, 156, 320, 816, 1092
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 179
GluI GCNGC 6 cut(s) 43, 153, 156, 320, 816, 1092
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 365
HapII CCGG 3 cut(s) 30, 39, 104
HhaI GCGC 1 cut(s) 180
Hin1II CATG 7 cut(s) 121, 284, 856, 882, 899, 914, 1055
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 5 cut(s) 65, 170, 356, 539, 1016
HpaII CCGG 3 cut(s) 30, 39, 104
HphI GGTGA 3 cut(s) 653, 1012, 1021
Hpy166II GTNNAC 3 cut(s) 251, 485, 733
Hpy188I TCNGA 5 cut(s) 15, 70, 144, 175, 391
Hpy188III TCNNGA 7 cut(s) 486, 583, 773, 869, 911, 958, 1059
Hpy8I GTNNAC 3 cut(s) 251, 485, 733
HpyAV CCTTC 4 cut(s) 10, 428, 1006, 1109
HpyCH4III ACNGT 3 cut(s) 115, 130, 1030
HpyCH4IV ACGT 2 cut(s) 253, 591
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 184, 319, 413, 623
HpyF3I CTNAG 3 cut(s) 143, 692, 742
HpySE526I ACGT 2 cut(s) 253, 591
Hsp92II CATG 7 cut(s) 121, 284, 856, 882, 899, 914, 1055
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 5 cut(s) 391, 409, 646, 865, 871
LmnI GCTCC 5 cut(s) 106, 236, 293, 310, 784
Lsp1109I GCAGC 5 cut(s) 54, 142, 306, 827, 1078
LweI GCATC 1 cut(s) 766
MaeI CTAG 1 cut(s) 413
MaeII ACGT 2 cut(s) 253, 591
MaeIII GTNAC 4 cut(s) 124, 570, 659, 746
MalI GATC 5 cut(s) 393, 411, 648, 867, 873
MboI GATC 5 cut(s) 391, 409, 646, 865, 871
MboII GAAGA 7 cut(s) 16, 177, 221, 271, 838, 946, 1035
MhlI GDGCHC 2 cut(s) 735, 1028
MluCI AATT 7 cut(s) 91, 420, 474, 501, 554, 650, 723
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 7 cut(s) 205, 516, 667, 760, 817, 972, 1119
MroXI GAANNNNTTC 2 cut(s) 169, 554
MseI TTAA 4 cut(s) 48, 338, 425, 761
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 2 cut(s) 61, 691
MspCI CTTAAG 1 cut(s) 760
MspI CCGG 3 cut(s) 30, 39, 104
MspR9I CCNGG 8 cut(s) 30, 39, 105, 269, 396, 522, 633, 1121
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 5 cut(s) 269, 396, 522, 633, 1121
MvnI CGCG 2 cut(s) 180, 718
MwoI GCNNNNNNNGC 5 cut(s) 39, 184, 319, 413, 623
NciI CCSGG 3 cut(s) 30, 39, 105
NdeII GATC 5 cut(s) 391, 409, 646, 865, 871
NlaIII CATG 7 cut(s) 121, 284, 856, 882, 899, 914, 1055
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 2 cut(s) 124, 659
NspI RCATGY 5 cut(s) 284, 856, 882, 899, 1055
PaeI GCATGC 2 cut(s) 856, 882
PagI TCATGA 1 cut(s) 910
PciI ACATGT 1 cut(s) 280
PctI GAATGC 1 cut(s) 967
PdmI GAANNNNTTC 2 cut(s) 169, 554
PfeI GAWTC 4 cut(s) 65, 170, 539, 1016
PflFI GACNNNGTC 1 cut(s) 113
PfoI TCCNGGA 2 cut(s) 103, 267
PkrI GCNGC 6 cut(s) 44, 154, 157, 321, 817, 1093
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Ppu21I YACGTR 1 cut(s) 254
PscI ACATGT 1 cut(s) 280
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 5 cut(s) 267, 394, 520, 631, 1119
PspGI CCWGG 5 cut(s) 267, 394, 520, 631, 1119
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 3 cut(s) 35, 518, 887
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 691
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 4 cut(s) 48, 338, 425, 761
SatI GCNGC 6 cut(s) 43, 153, 156, 320, 816, 1092
Sau3AI GATC 5 cut(s) 391, 409, 646, 865, 871
Sau96I GGNCC 3 cut(s) 35, 518, 887
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 8 cut(s) 30, 39, 105, 269, 396, 522, 633, 1121
SduI GDGCHC 2 cut(s) 735, 1028
SfaNI GCATC 1 cut(s) 766
SinI GGWCC 3 cut(s) 35, 518, 887
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 3 cut(s) 314, 760, 810
SmoI CTYRAG 3 cut(s) 314, 760, 810
SphI GCATGC 2 cut(s) 856, 882
Sse9I AATT 7 cut(s) 91, 420, 474, 501, 554, 650, 723
SsiI CCGC 4 cut(s) 33, 59, 152, 718
SspI AATATT 1 cut(s) 700
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 8 cut(s) 28, 37, 103, 267, 394, 520, 631, 1119
TaaI ACNGT 3 cut(s) 115, 130, 1030
TaiI ACGT 2 cut(s) 256, 594
TaqI TCGA 3 cut(s) 207, 829, 1131
TaqII GACCGA 1 cut(s) 904
TasI AATT 7 cut(s) 91, 420, 474, 501, 554, 650, 723
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 4 cut(s) 65, 170, 539, 1016
Tru1I TTAA 4 cut(s) 48, 338, 425, 761
Tru9I TTAA 4 cut(s) 48, 338, 425, 761
TscAI CASTG 3 cut(s) 133, 607, 1033
TseFI GTSAC 2 cut(s) 124, 659
TseI GCWGC 5 cut(s) 42, 155, 319, 815, 1091
Tsp45I GTSAC 2 cut(s) 124, 659
TspDTI ATGAA 8 cut(s) 17, 291, 552, 644, 806, 927, 963, 1022
TspGWI ACGGA 2 cut(s) 368, 531
TspRI CASTG 3 cut(s) 133, 607, 1033
Tth111I GACNNNGTC 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 760
VneI GTGCAC 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 35, 518, 887
XapI RAATTY 1 cut(s) 554
XceI RCATGY 5 cut(s) 284, 856, 882, 899, 1055
XmiI GTMKAC 1 cut(s) 250
XmnI GAANNNNTTC 2 cut(s) 169, 554
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.