AT3G61480

RAB6A-GEF complex partner protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002130
Physical Location & Seq
Forward (+)
22749780 .. 22757130
7351 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61480.1

Sequence Viewer

Length: 3246 bp
ATGGCTTACGGGTGGCCGCAGGTGATCCCGCTTCTACCTGGATCGCAGCGAGTCGTGTACCTTAAGCTCGCCGGCCGGCTATTACTGGTCGTTTCTCCGTCTCACCTGGAGCTTTGGGGTTCTTCTCAGCAACGAGTGAGGTTGGGAAAGTATATGAGAGATGACAAGTCGTTGCGAGAAGAAGGAGAGAATTTGCAAGCTGTGTGGAGTCCAGACTCCAAATTGATTGCTGTTCTTGTCCCTTTTGCTGGCAAGGACTTGTCTGTGAGCAATTTTGTTAGGGACAGCAAAACTATGCTTTTGGGACTCTCCGATGGATCTTTATATAGTATTTCCTGGAAAGGAGAGTTTGGTGGAGCTTTCAGTATTGGCTCCCACCCTTCTGCTAGCAACGATGATAGACTCTTGTCCTACACTCTTGGTAATGGGCTAGTCTCTGGAGTAGCTTCACCAACACTTGCATCTGATGATAAATTCTCTACAAAACCGGCTATTGTTCAGCTGGAACTTTGCACTCGTTCCAAGTTATTGTTTGTGTTAAATTCGGATGGGCAGCTAGTAGTATGCTCTGTGAATAAGAAAGGTTTAAAGTACACTGAGAGTATTAGAGCTGAGAAGAAGTTGGGTGGTGATGCTGTTTGTGCATCAGTGGCTTCAGAGCAACAAATTCTTGCTGTGGGTACAAGAAAAGGGATGGTGGAGTTATATGATCTGTCACACTCGATCTCTCTCTTGCGAACAGTTTCTTTGCATGACTGGGGTTATTCAGCGGATTACACTGGGCCTGTAAATAACATTGCATGGACGCCTGATAATTCTGCTTTTGCAGTTGGGTGGAAGTCGAGAGGACTTGCAGTTTGGTCTGTTTCTGGATGTAGATTAATGTCAACTGTCCGCCAAATTGGACTGACTTCTACATCTTCCCCTAAAATTAATCCAAAACAAGACTGTAAATACGAACCACTGATGAGTGGTACTTCAGCCATCCAGTGGGATGAATATGGATATAGACTATTTGCTACAGAGGAGGCATCATGTGATAGAATTCTTGCATTTTCTTTTGGGAAATGTTGCTTAAATAGAGGAGTTTCAGGAAAAACTTATGTTCGTCAGGTAATGTATGGTGATGATAGACTACTCATGGTTCAGGCGGAGGACACTGACGAGCTTAAGCTTTTACATCTAAAACTTCCAGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGGTTGCTGGTTTACATGGCCTGATTTTGTATGACGTTAGGTTTAAGAAGTGGAGGGTATTTGGAGATGTCAGTCAAGAACAACAGATTCATTGCAAGGGTTTGTTATGGTTGGGGAAGATTGTCGTAATCTGTAACTTCATTGAAGCTTCTGAGACATATGAGCTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCTTTACTTTGTCGTAAAGTGCTGCTTGGCAAACCAATGGTGATGGATGTTTACCAGGATTATATACTTGTATCTTATCTTCCGTTTATCATCCACGTCTACCATGTGAAGATATATGGTGAATTGACACCTTCAAGCAAAGCAGATCTACAGCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGCGATTTGTTCCTGATCAGCACCCGAGAGAAGGCGAATTGGATGAAGATAATTTGTCTTCTGATTTGTCAGAAAGGGAACCCTCAAGATGTCTTATACTGAGAGGAAATGGGGAGCTTTCACTTCTTGATTTGGTTGATGGACGAGAGAGGGAACTTACAGACTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAAGAGAAGACAAATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGGTTTGGTATCCTTCTCTAGGGGATGATCCTTTTATGCAAGAGGATTTCCTGCAGCTGGATCCAGAGTTGGAATTTGATCGTGAGGTGTATCCCTTGGGACTTTTACCAAACGTGGGCGTCGTTGTTGGAGTTTCTCAGAGAATGTCATTTTCGGCAAGCGCAGAGTTTCCGTGTTTTGAGCCTACACCCCAGGCTCAGACTATACTACATTGCCTGCTCCGTCACCTCCTTCAGAGAGATAAAAATGAAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATGCAGAGATTTCTAGGCCAAATCCAAACAGGAACCAGATTTCAGGACCTGGACATCTTAAAAAGTTATCCCTTTTGAGAAAAGCCTGTGATTTAATAAAAAATTTCCCCGAGTACTATGATGTGGTTGTGAATGTAGCCAGAAAAACCGATGCCCGTCACTGGGCTGATTTATTTTCTGCTGCTGGGATATCAACAACATTGTTTGAGGACTGCTTCCAGCGAAGATGGTATCGAACTGCAGCTTGCTATATCCTTGTGATTGCAAAACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCTTTACGGCTATTGCAGGCGACACTTGACGAGTCCCTCTATGATCTTGCTGGAGAGCTAGTGAGGTTCTTACTAAGATCTGGAAGAGACATTGAGCAGGCGCCAACAGAATCAGATTCATTATCGCCTAAGCTTCTCGGTTTTCTTATTTTTGGCTCCAGCCACAAGAAATCATCACTCGATAAGAGCTCCTCGTTCAAAGAGCAAAGTCCTCATGTTGCTTCTGTAAAGAGCATACTTGAAAGTCATGCCAGTTACTTGATGTCTGGTAAAGAACTTTCAAAGCTTGTTGCATTCGTCAAAGGCACCCAGTTTGATATTGTGGATTTTCTTCAACGAGAAAGATATGGTTGTGCGCAGCTGCAGAATTTTGCTGCAGGGCTTGAACTGATTGGGCAAAAGCTGCAAATGAGTGAGCTACAGAACCGGTTAGATGCAGAGTTTCTATTGGCTCAGATGTGCTCCGTCAAATTCAAAGAATGGATAGTTGTTCTTGCCACTCTTTTACAACGGTCTGAGGTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCAAAACTCTCAGCGACCTCACGAGAAGAAAGCAATAGAGGTTCCATCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

1081

Amino Acids

121.42

Weight (kDa)

6.03

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 157 - 299 1.4e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 164 - 352 6.6e-06 CDC20/Fizzy WD40 domain
Beta-prop_RIC1_2nd PF25440 374 - 707 2.3e-86 RIC1 second beta propeller domain
RIC1 PF07064 714 - 889 2.8e-49 RIC1 C-terminal alpha solenoid region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
AasI GACNNNNNNGTC 1 cut(s) 3142
Acc16I TGCGCA 1 cut(s) 2919
Acc36I ACCTGC 2 cut(s) 10, 1921
AccB1I GGYRCC 2 cut(s) 2662, 2867
AccB7I CCANNNNNTGG 2 cut(s) 990, 2236
AccI GTMKAC 1 cut(s) 1560
AciI CCGC 6 cut(s) 17, 29, 770, 895, 1151, 1262
AclWI GGATC 6 cut(s) 19, 49, 325, 1952, 1985, 1998
AcoI YGGCCR 2 cut(s) 14, 73
AcsI RAATTY 9 cut(s) 190, 473, 541, 666, 1044, 2003, 2365, 2929, 3032
AcuI CTGAAG 4 cut(s) 639, 963, 2147, 3164
AcvI CACGTG 1 cut(s) 1231
AcyI GRCGYC 3 cut(s) 806, 2049, 2663
AfaI GTAC 7 cut(s) 59, 593, 682, 976, 2378, 2558, 3167
AfiI CCNNNNNNNGG 9 cut(s) 248, 990, 1700, 1949, 1987, 2045, 2236, 2424, 2425
AflII CTTAAG 2 cut(s) 62, 1169
AflIII ACRYGT 2 cut(s) 1228, 1856
AgeI ACCGGT 1 cut(s) 2988
AhdI GACNNNNNGTC 1 cut(s) 1860
AjiI CACGTC 1 cut(s) 1558
AjnI CCWGG 6 cut(s) 37, 105, 335, 1515, 2121, 2311
AjuI GAANNNNNNNTTGG 2 cut(s) 1918, 1950
Alw21I GWGCWC 3 cut(s) 1463, 2753, 3026
Alw26I GTCTC 5 cut(s) 105, 439, 1409, 2643, 3150
AlwI GGATC 6 cut(s) 19, 49, 325, 1952, 1985, 1998
AlwNI CAGNNNCTG 1 cut(s) 2312
Ama87I CYCGRG 2 cut(s) 1693, 2372
AoxI GGCC 6 cut(s) 14, 73, 782, 1217, 1279, 2279
ApoI RAATTY 9 cut(s) 190, 473, 541, 666, 1044, 2003, 2365, 2929, 3032
ArsI GACNNNNNNTTYG 2 cut(s) 840, 872
AseI ATTAAT 2 cut(s) 881, 933
AsiGI ACCGGT 1 cut(s) 2988
Asp700I GAANNNNTTC 1 cut(s) 742
AspLEI GCGC 3 cut(s) 2093, 2665, 2920
AspS9I GGNCC 2 cut(s) 782, 2309
AsuNHI GCTAGC 2 cut(s) 386, 1238
AvaI CYCGRG 2 cut(s) 1693, 2372
AvaII GGWCC 1 cut(s) 2309
BamHI GGATCC 1 cut(s) 1990
BanI GGYRCC 2 cut(s) 2662, 2867
BanII GRGCYC 2 cut(s) 1463, 2753
BarI GAAGNNNNNNTAC 4 cut(s) 1524, 1556, 2172, 2204
BauI CACGAG 1 cut(s) 3213
BbrPI CACGTG 1 cut(s) 1231
BbsI GAAGAC 2 cut(s) 1719, 1883
Bbv12I GWGCWC 3 cut(s) 1463, 2753, 3026
BceAI ACGGC 1 cut(s) 2585
BcgI CGANNNNNNTGC 2 cut(s) 2187, 2221
BciT130I CCWGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
BciVI GTATCC 2 cut(s) 1950, 2031
BclI TGATCA 2 cut(s) 1453, 1684
BcoDI GTCTC 5 cut(s) 105, 439, 1409, 2643, 3150
BfaI CTAG 9 cut(s) 387, 431, 557, 1239, 1907, 1949, 2277, 2534, 2621
BfmI CTRYAG 7 cut(s) 1020, 1610, 1982, 2502, 2924, 2937, 2981
BfoI RGCGCY 1 cut(s) 2666
BfrI CTTAAG 2 cut(s) 62, 1169
BfuAI ACCTGC 2 cut(s) 10, 1921
BfuI GTATCC 2 cut(s) 1950, 2031
BglII AGATCT 2 cut(s) 1606, 2639
BmcAI AGTACT 2 cut(s) 2378, 2558
Bme1390I CCNGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
Bme18I GGWCC 1 cut(s) 2309
BmeRI GACNNNNNGTC 1 cut(s) 1860
BmeT110I CYCGRG 2 cut(s) 1693, 2372
BmgBI CACGTC 1 cut(s) 1558
BmgT120I GGNCC 2 cut(s) 782, 2309
BmiI GGNNCC 8 cut(s) 373, 1749, 1992, 2297, 2664, 2719, 2869, 3235
BmrFI CCNGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
BmrI ACTGGG 4 cut(s) 766, 789, 2434, 2866
BmsI GCATC 7 cut(s) 470, 622, 653, 1040, 2254, 2404, 2986
BmtI GCTAGC 2 cut(s) 390, 1242
BmuI ACTGGG 4 cut(s) 766, 789, 2434, 2866
BoxI GACNNNNGTC 1 cut(s) 406
BpiI GAAGAC 2 cut(s) 1719, 1883
BpmI CTGGAG 5 cut(s) 128, 459, 2258, 2634, 2704
Bpu10I CCTNAGC 1 cut(s) 2691
BpuEI CTTGAG 1 cut(s) 1738
BsaAI YACGTR 1 cut(s) 1231
BsaHI GRCGYC 3 cut(s) 806, 2049, 2663
BsaJI CCNNGG 3 cut(s) 1921, 2025, 2121
BsaWI WCCGGW 2 cut(s) 2988, 3099
BsaXI ACNNNNNCTCC 2 cut(s) 2607, 2637
Bsc4I CCNNNNNNNGG 9 cut(s) 248, 990, 1700, 1949, 1987, 2045, 2236, 2424, 2425
Bse118I RCCGGY 4 cut(s) 71, 75, 487, 2988
Bse1I ACTGG 8 cut(s) 90, 761, 784, 988, 1193, 2429, 2814, 2872
Bse3DI GCAATG 4 cut(s) 795, 1351, 1674, 2140
BseBI CCWGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
BseDI CCNNGG 3 cut(s) 1921, 2025, 2121
BseLI CCNNNNNNNGG 9 cut(s) 248, 990, 1700, 1949, 1987, 2045, 2236, 2424, 2425
BseMI GCAATG 4 cut(s) 795, 1351, 1674, 2140
BseNI ACTGG 8 cut(s) 90, 761, 784, 988, 1193, 2429, 2814, 2872
BseRI GAGGAG 3 cut(s) 1040, 1098, 2743
BseX3I CGGCCG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 2447
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 6 cut(s) 16, 75, 784, 1219, 1281, 2281
BshNI GGYRCC 2 cut(s) 2662, 2867
BshTI ACCGGT 1 cut(s) 2988
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 3 cut(s) 1463, 2753, 3026
BsiHKCI CYCGRG 2 cut(s) 1693, 2372
BsiSI CCGG 5 cut(s) 72, 76, 488, 2989, 3100
BslFI GGGAC 5 cut(s) 224, 296, 318, 2043, 2581
BslI CCNNNNNNNGG 9 cut(s) 248, 990, 1700, 1949, 1987, 2045, 2236, 2424, 2425
BsmAI GTCTC 5 cut(s) 105, 439, 1409, 2643, 3150
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 5 cut(s) 224, 296, 318, 2043, 2581
BsmI GAATGC 2 cut(s) 1932, 2855
BsnI GGCC 6 cut(s) 16, 75, 784, 1219, 1281, 2281
BsoBI CYCGRG 2 cut(s) 1693, 2372
Bsp1286I GDGCHC 3 cut(s) 1463, 2753, 3026
BspACI CCGC 6 cut(s) 17, 29, 770, 895, 1151, 1262
BspANI GGCC 6 cut(s) 16, 75, 784, 1219, 1281, 2281
BspHI TCATGA 1 cut(s) 1641
BspLI GGNNCC 8 cut(s) 373, 1749, 1992, 2297, 2664, 2719, 2869, 3235
BspMAI CTGCAG 4 cut(s) 1986, 2506, 2928, 2941
BspMI ACCTGC 2 cut(s) 10, 1921
BspOI GCTAGC 2 cut(s) 390, 1242
BspPI GGATC 6 cut(s) 19, 49, 325, 1952, 1985, 1998
BspT107I GGYRCC 2 cut(s) 2662, 2867
BspTI CTTAAG 2 cut(s) 62, 1169
BsrDI GCAATG 4 cut(s) 795, 1351, 1674, 2140
BsrFI RCCGGY 4 cut(s) 71, 75, 487, 2988
BsrI ACTGG 8 cut(s) 90, 761, 784, 988, 1193, 2429, 2814, 2872
BssAI RCCGGY 4 cut(s) 71, 75, 487, 2988
BssECI CCNNGG 3 cut(s) 1921, 2025, 2121
BssNI GRCGYC 3 cut(s) 806, 2049, 2663
BssSI CACGAG 1 cut(s) 3213
BssT1I CCWWGG 1 cut(s) 2025
Bst2BI CACGAG 1 cut(s) 3213
Bst2UI CCWGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
Bst4CI ACNGT 8 cut(s) 742, 892, 950, 1624, 2257, 2561, 3075, 3114
Bst6I CTCTTC 3 cut(s) 1866, 2175, 2641
BstACI GRCGYC 3 cut(s) 806, 2049, 2663
BstAFI CTTAAG 2 cut(s) 62, 1169
BstAPI GCANNNNNTGC 1 cut(s) 2965
BstBAI YACGTR 1 cut(s) 1231
BstENI CCTNNNNNAGG 1 cut(s) 1947
BstH2I RGCGCY 1 cut(s) 2666
BstHHI GCGC 3 cut(s) 2093, 2665, 2920
BstMAI GTCTC 5 cut(s) 105, 439, 1409, 2643, 3150
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 641, 650, 2965
BstNI CCWGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
BstNSI RCATGY 1 cut(s) 1860
BstPAI GACNNNNGTC 1 cut(s) 406
BstSCI CCNGG 6 cut(s) 37, 105, 335, 1515, 2121, 2311
BstSFI CTRYAG 7 cut(s) 1020, 1610, 1982, 2502, 2924, 2937, 2981
BstV2I GAAGAC 2 cut(s) 1719, 1883
BstX2I RGATCY 4 cut(s) 317, 1606, 1990, 2639
BstYI RGATCY 4 cut(s) 317, 1606, 1990, 2639
BstZI CGGCCG 1 cut(s) 73
BsuI GTATCC 2 cut(s) 1950, 2031
BsuRI GGCC 6 cut(s) 16, 75, 784, 1219, 1281, 2281
BtrI CACGTC 1 cut(s) 1558
BtsIMutI CAGTG 7 cut(s) 594, 654, 777, 962, 995, 1158, 2422
BveI ACCTGC 2 cut(s) 10, 1921
CaiI CAGNNNCTG 1 cut(s) 2312
CciI TCATGA 1 cut(s) 1641
CfoI GCGC 3 cut(s) 2093, 2665, 2920
Cfr10I RCCGGY 4 cut(s) 71, 75, 487, 2988
Cfr13I GGNCC 2 cut(s) 782, 2309
CseI GACGC 2 cut(s) 814, 2038
Csp6I GTAC 7 cut(s) 58, 592, 681, 975, 2377, 2557, 3166
CspAI ACCGGT 1 cut(s) 2988
CspCI CAANNNNNGTGG 2 cut(s) 185, 220
CviQI GTAC 7 cut(s) 58, 592, 681, 975, 2377, 2557, 3166
DinI GGCGCC 1 cut(s) 2664
DraI TTTAAA 1 cut(s) 588
DrdI GACNNNNNNGTC 1 cut(s) 3142
DriI GACNNNNNGTC 1 cut(s) 1860
DseDI GACNNNNNNGTC 1 cut(s) 3142
EaeI YGGCCR 2 cut(s) 14, 73
EagI CGGCCG 1 cut(s) 73
Eam1104I CTCTTC 3 cut(s) 1866, 2175, 2641
Eam1105I GACNNNNNGTC 1 cut(s) 1860
EarI CTCTTC 3 cut(s) 1866, 2175, 2641
EciI GGCGGA 2 cut(s) 884, 1166
Ecl136II GAGCTC 2 cut(s) 1461, 2751
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 2025
Eco24I GRGCYC 2 cut(s) 1463, 2753
Eco32I GATATC 2 cut(s) 1445, 2454
Eco47I GGWCC 1 cut(s) 2309
Eco52I CGGCCG 1 cut(s) 73
Eco53kI GAGCTC 2 cut(s) 1461, 2751
Eco57I CTGAAG 4 cut(s) 639, 963, 2147, 3164
Eco72I CACGTG 1 cut(s) 1231
Eco88I CYCGRG 2 cut(s) 1693, 2372
EcoICRI GAGCTC 2 cut(s) 1461, 2751
EcoNI CCTNNNNNAGG 1 cut(s) 1947
EcoO109I RGGNCCY 1 cut(s) 2309
EcoRI GAATTC 1 cut(s) 1044
EcoRII CCWGG 6 cut(s) 37, 105, 335, 1515, 2121, 2311
EcoRV GATATC 2 cut(s) 1445, 2454
EcoT14I CCWWGG 1 cut(s) 2025
EcoT38I GRGCYC 2 cut(s) 1463, 2753
EgeI GGCGCC 1 cut(s) 2664
EheI GGCGCC 1 cut(s) 2664
ErhI CCWWGG 1 cut(s) 2025
Esp3I CGTCTC 1 cut(s) 105
FalI AAGNNNNNCTT 2 cut(s) 1470, 1502
FaqI GGGAC 5 cut(s) 224, 296, 318, 2043, 2581
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 1420
FbaI TGATCA 2 cut(s) 1453, 1684
FblI GTMKAC 1 cut(s) 1560
FriOI GRGCYC 2 cut(s) 1463, 2753
FspBI CTAG 9 cut(s) 387, 431, 557, 1239, 1907, 1949, 2277, 2534, 2621
FspI TGCGCA 1 cut(s) 2919
GlaI GCGC 3 cut(s) 2092, 2664, 2919
GsaI CCCAGC 1 cut(s) 2451
GsuI CTGGAG 5 cut(s) 128, 459, 2258, 2634, 2704
HaeII RGCGCY 1 cut(s) 2666
HaeIII GGCC 6 cut(s) 16, 75, 784, 1219, 1281, 2281
HapII CCGG 5 cut(s) 72, 76, 488, 2989, 3100
HgaI GACGC 2 cut(s) 814, 2038
HhaI GCGC 3 cut(s) 2093, 2665, 2920
Hin1I GRCGYC 3 cut(s) 806, 2049, 2663
Hin6I GCGC 3 cut(s) 2091, 2663, 2918
HinP1I GCGC 3 cut(s) 2091, 2663, 2918
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HindIII AAGCTT 4 cut(s) 1172, 1407, 2693, 2846
HpaII CCGG 5 cut(s) 72, 76, 488, 2989, 3100
Hpy166II GTNNAC 6 cut(s) 58, 594, 888, 1274, 1513, 1561
Hpy8I GTNNAC 6 cut(s) 58, 594, 888, 1274, 1513, 1561
Hpy99I CGWCG 1 cut(s) 2054
HpyAV CCTTC 7 cut(s) 176, 390, 1602, 1694, 1953, 2171, 2531
HpyCH4III ACNGT 8 cut(s) 742, 892, 950, 1624, 2257, 2561, 3075, 3114
HpyCH4IV ACGT 4 cut(s) 1230, 1296, 1557, 2043
HpyF10VI GCNNNNNNNGC 3 cut(s) 641, 650, 2965
HpySE526I ACGT 4 cut(s) 1230, 1296, 1557, 2043
Hsp92I GRCGYC 3 cut(s) 806, 2049, 2663
HspAI GCGC 3 cut(s) 2091, 2663, 2918
KasI GGCGCC 1 cut(s) 2662
KroI GCCGGC 2 cut(s) 71, 75
KroNI GCCGGC 2 cut(s) 73, 77
Ksp22I TGATCA 2 cut(s) 1453, 1684
LmnI GCTCC 8 cut(s) 109, 356, 377, 1783, 2154, 2723, 2756, 3029
LweI GCATC 7 cut(s) 470, 622, 653, 1040, 2254, 2404, 2986
MaeI CTAG 9 cut(s) 387, 431, 557, 1239, 1907, 1949, 2277, 2534, 2621
MaeII ACGT 4 cut(s) 1230, 1296, 1557, 2043
MaeIII GTNAC 8 cut(s) 714, 1394, 1852, 2153, 2187, 2420, 2816, 3133
MflI RGATCY 4 cut(s) 317, 1606, 1990, 2639
MhlI GDGCHC 3 cut(s) 1463, 2753, 3026
Mly113I GGCGCC 1 cut(s) 2663
MlyI GAGTC 8 cut(s) 60, 209, 217, 300, 396, 1826, 2603, 3152
MmeI TCCRAC 2 cut(s) 1980, 2038
MroNI GCCGGC 2 cut(s) 71, 75
MroXI GAANNNNTTC 1 cut(s) 742
MspA1I CMGCKG 4 cut(s) 502, 770, 1987, 2923
MspCI CTTAAG 2 cut(s) 62, 1169
MspI CCGG 5 cut(s) 72, 76, 488, 2989, 3100
MspR9I CCNGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
Mva1269I GAATGC 2 cut(s) 1932, 2855
MvaI CCWGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
MwoI GCNNNNNNNGC 3 cut(s) 641, 650, 2965
NaeI GCCGGC 2 cut(s) 73, 77
NarI GGCGCC 1 cut(s) 2663
NdeI CATATG 1 cut(s) 1420
NgoMIV GCCGGC 2 cut(s) 71, 75
NheI GCTAGC 2 cut(s) 386, 1238
NlaIV GGNNCC 8 cut(s) 373, 1749, 1992, 2297, 2664, 2719, 2869, 3235
NmuCI GTSAC 5 cut(s) 714, 1852, 2153, 2420, 3133
NsbI TGCGCA 1 cut(s) 2919
NspI RCATGY 1 cut(s) 1860
PagI TCATGA 1 cut(s) 1641
PaqCI CACCTGC 1 cut(s) 10
PciI ACATGT 1 cut(s) 1856
PcsI WCGNNNNNNNCGW 1 cut(s) 2049
PctI GAATGC 2 cut(s) 1932, 2855
PdiI GCCGGC 2 cut(s) 73, 77
PdmI GAANNNNTTC 1 cut(s) 742
PfeI GAWTC 3 cut(s) 1348, 2672, 2678
PflMI CCANNNNNTGG 2 cut(s) 990, 2236
PfoI TCCNGGA 1 cut(s) 335
PinAI ACCGGT 1 cut(s) 2988
PleI GAGTC 8 cut(s) 59, 209, 216, 300, 396, 1826, 2602, 3151
PluTI GGCGCC 1 cut(s) 2666
PmaCI CACGTG 1 cut(s) 1231
PmlI CACGTG 1 cut(s) 1231
PpsI GAGTC 8 cut(s) 59, 209, 216, 300, 396, 1826, 2602, 3151
Ppu21I YACGTR 1 cut(s) 1231
PpuMI RGGWCCY 1 cut(s) 2309
PscI ACATGT 1 cut(s) 1856
PshAI GACNNNNGTC 1 cut(s) 406
PshBI ATTAAT 2 cut(s) 881, 933
Psp124BI GAGCTC 2 cut(s) 1463, 2753
Psp5II RGGWCCY 1 cut(s) 2309
Psp6I CCWGG 6 cut(s) 37, 105, 335, 1515, 2121, 2311
PspCI CACGTG 1 cut(s) 1231
PspFI CCCAGC 1 cut(s) 2447
PspGI CCWGG 6 cut(s) 37, 105, 335, 1515, 2121, 2311
PspN4I GGNNCC 8 cut(s) 373, 1749, 1992, 2297, 2664, 2719, 2869, 3235
PspPI GGNCC 2 cut(s) 782, 2309
PspPPI RGGWCCY 1 cut(s) 2309
PstI CTGCAG 4 cut(s) 1986, 2506, 2928, 2941
PstNI CAGNNNCTG 1 cut(s) 2312
PsuI RGATCY 4 cut(s) 317, 1606, 1990, 2639
PvuII CAGCTG 3 cut(s) 502, 1987, 2923
RsaI GTAC 7 cut(s) 59, 593, 682, 976, 2378, 2558, 3167
RsaNI GTAC 7 cut(s) 58, 592, 681, 975, 2377, 2557, 3166
SacI GAGCTC 2 cut(s) 1463, 2753
Sau96I GGNCC 2 cut(s) 782, 2309
ScaI AGTACT 2 cut(s) 2378, 2558
SchI GAGTC 8 cut(s) 60, 209, 217, 300, 396, 1826, 2603, 3152
ScrFI CCNGG 6 cut(s) 39, 107, 337, 1517, 2123, 2313
SduI GDGCHC 3 cut(s) 1463, 2753, 3026
SfaNI GCATC 7 cut(s) 470, 622, 653, 1040, 2254, 2404, 2986
SfcI CTRYAG 7 cut(s) 1020, 1610, 1982, 2502, 2924, 2937, 2981
SfoI GGCGCC 1 cut(s) 2664
SinI GGWCC 1 cut(s) 2309
SmlI CTYRAG 3 cut(s) 62, 1169, 1753
SmoI CTYRAG 3 cut(s) 62, 1169, 1753
SsiI CCGC 6 cut(s) 17, 29, 770, 895, 1151, 1262
SspDI GGCGCC 1 cut(s) 2662
SspMI CTAG 9 cut(s) 387, 431, 557, 1239, 1907, 1949, 2277, 2534, 2621
SstI GAGCTC 2 cut(s) 1463, 2753
StyD4I CCNGG 6 cut(s) 37, 105, 335, 1515, 2121, 2311
StyI CCWWGG 1 cut(s) 2025
TaaI ACNGT 8 cut(s) 742, 892, 950, 1624, 2257, 2561, 3075, 3114
TaiI ACGT 4 cut(s) 1233, 1299, 1560, 2046
TaqI TCGA 5 cut(s) 722, 842, 1890, 2497, 2742
TatI WGTACW 3 cut(s) 591, 2376, 2556
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 3 cut(s) 1348, 2672, 2678
TscAI CASTG 7 cut(s) 601, 654, 784, 969, 995, 1165, 2429
TseFI GTSAC 5 cut(s) 714, 1852, 2153, 2420, 3133
Tsp45I GTSAC 5 cut(s) 714, 1852, 2153, 2420, 3133
TspDTI ATGAA 6 cut(s) 1011, 1340, 1390, 1728, 2193, 2670
TspGWI ACGGA 5 cut(s) 87, 1533, 2091, 2141, 3016
TspRI CASTG 7 cut(s) 601, 654, 784, 969, 995, 1165, 2429
Van91I CCANNNNNTGG 2 cut(s) 990, 2236
Vha464I CTTAAG 2 cut(s) 62, 1169
VpaK11BI GGWCC 1 cut(s) 2309
VspI ATTAAT 2 cut(s) 881, 933
XagI CCTNNNNNAGG 1 cut(s) 1947
XapI RAATTY 9 cut(s) 190, 473, 541, 666, 1044, 2003, 2365, 2929, 3032
XceI RCATGY 1 cut(s) 1860
XmiI GTMKAC 1 cut(s) 1560
XmnI GAANNNNTTC 1 cut(s) 742
XspI CTAG 9 cut(s) 387, 431, 557, 1239, 1907, 1949, 2277, 2534, 2621
ZrmI AGTACT 2 cut(s) 2378, 2558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.