Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002130

Physical Location & Seq

Genomic Coordinates Reverse (-)

18296894 .. 18301370

Gene Structure 4477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGTGAAATCATATATTTCAAGGTCATCAATGGCTTACTGATTGTTGTGACTCCCTCTCATCTTGCTCTGGGGAGCTCTTCCCAGAGCATAAAGTGTGACTGGGGAATACTGCAGTTACTGGCATTTGTGAGTGATGAAAGGAAAAAGGTGCTTCGTGCATATGTTAGTATGCCAATGTGCATTTGGGTGGAAGTTAAGAGGACTTACAGTTTGGTATATCTCTGGTTGTTGTTTGATTTCAACAATCCGTCAAATAGTGGGATGAATATGGATACAGGCTCTATGCTATTGAAGAACGATCGTTGGAGAGTATTTGGTAAATGTTGCCTTAATAGAGGAGTTTCAGGCATGACATATGTCCGGCAAGTGATATATGGTGATGATCAGTTGCTTGTTGTTCTGTCTGAAGATACTGATGAACTTAAGATGCTACATCTTAACCTTCCAGTTTCTTATATCTCACAAAATTGGTCAGTTCAACATGTAGCGGCTAGCAAGGATGGAATGTACTTAGCAATTGCTGATCTCCATGGTGGTGTGTTTGGAGACATTACTCAGGAACAAAAGATTCATAGCAAAGTTTTGTTATGGGTGAGGAAGATTGTTGTTGTCTGCAACTACATTGATTCTACTAACACAGCTCACTACTTTGCCGAAAGTGATTGCTTGCGAAACCAATGTTCATCGATGTCTATCAAAGATTATATACTAGTCACATATCGCCCATTTGATGTACACATATTCCATGTGAAATTATTTGGTGAGTTGATGCCTTCCACTACTCCAAATTTAGAGTCAATCATGACTGCAAAGAGCCATCCTGCAGCCATACGTTTTGTTCCAGATCAGCTTCCGAGAGATCACTTTTCAGATAATCATTTGTCTAACTCAGATCCTTTACGAAAAGAGCCTGCAAGAAAAATTTCATGGTTAGATTATGGCCACCGCAGAATGCAGGTTTGGTATCCATCTCTGGGTGTTGACCCTTTTATGCAGGAGAATTTCTTGCAGAGAATGTCATTTTCAGCCCGCAGAGAGTTTCCATTTTTTGACCCAACACCTCAAGCTCAAACTATATTACATTGTCTTCTAAGGCACCTTATTCAGAGGGACAAAAGGAAGGAAGCTTTAAGGTTGGCCCAATTATCAGCAGAAAAACCTCATTTCTCTCATTGTATGGAGTGGCTTCTGTTTACTGTATTGAATCGGACATATCCAGTCATGGAAGTCAACCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

414

Amino Acids

47.8

Weight (kDa)

8.62

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RIC1_2nd	PF25440	127 - 277	1.2e-13	RIC1 second beta propeller domain
RIC1	PF07064	362 - 406	3.8e-08	RIC1 C-terminal alpha solenoid region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61480 AT3G61480 AT5G28350 AT5G28350
fragaria_vesca	FvH4_5g28900 FvH4_5g28900 FvH4_5g28900
malus_domestica	MD01G1067900.v1.1 MD01G1068000.v1.1 MD11G1239500.v1.1
prunus_persica	Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1
pyrus_communis	pycom01g09700 pycom01g09710 pycom07g13050 pycom11g21100
rosa_chinensis	RchiOBHm_Chr1g0356891 RchiOBHm_Chr1g0356901 RchiOBHm_Chr1g0356911 RchiOBHm_Chr1g0356921 RchiOBHm_Chr1g0356931 RchiOBHm_Chr7g0221211
rosa_laevigata	RLG00000002173 RLG00000028071
rosa_multiflora	Rmu_sc0000324.1_g000014
rosa_roxburghii	Rroxscaffold_3G00238580 Rroxscaffold_4G00299210
rosa_rugosa	Rorug01G0251900 Rorug01G0252000 Rorug07G0201300
rosa_samantha	Rh1AG266600 Rh1AG266700 Rh1BG234000 Rh1CG250100 Rh1DG261500 Rh6DG315800 Rh7AG340100 Rh7BG331300 Rh7CG358100 Rh7DG338800 Rh7DG338900
rosa_wichuraiana	Rw1G023540 Rw7G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	1098
AciI	CCGC	4 cut(s)	491, 949, 1033, 1237
AclWI	GGATC	1 cut(s)	890
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	3 cut(s)	790, 924, 1003
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	512, 738
AfiI	CCNNNNNNNGG	1 cut(s)	977
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	5 cut(s)	22, 244, 295, 482, 1207
AhlI	ACTAGT	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	946, 978
AluBI	AGCT	5 cut(s)	78, 644, 853, 1070, 1130
AluI	AGCT	5 cut(s)	78, 644, 853, 1070, 1130
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	890
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	943, 1140
ApeKI	GCWGC	1 cut(s)	827
ApoI	RAATTY	3 cut(s)	790, 924, 1003
ArsI	GACNNNNNNTTYG	4 cut(s)	196, 228, 782, 814
Asp700I	GAANNNNTTC	1 cut(s)	925
AspS9I	GGNCC	1 cut(s)	1141
AsuHPI	GGTGA	4 cut(s)	17, 392, 607, 776
AsuNHI	GCTAGC	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	945
BanI	GGYRCC	1 cut(s)	1098
BanII	GRGCYC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	1082
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	839
BccI	CCATC	3 cut(s)	497, 828, 979
BciVI	GTATCC	2 cut(s)	268, 978
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	543
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	2 cut(s)	495, 713
BfmI	CTRYAG	2 cut(s)	113, 825
BfrI	CTTAAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	949
BfuI	GTATCC	2 cut(s)	268, 978
BisI	GCNGC	2 cut(s)	492, 828
BlsI	GCNGC	2 cut(s)	493, 829
BmgT120I	GGNCC	1 cut(s)	1141
BmiI	GGNNCC	1 cut(s)	1100
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	420, 762
BmtI	GCTAGC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	112
BoxI	GACNNNNGTC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	1082
BpuEI	CTTGAG	1 cut(s)	1050
Bsa29I	ATCGAT	1 cut(s)	689
BsaBI	GATNNNNATC	1 cut(s)	695
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	977
Bse1I	ACTGG	4 cut(s)	107, 126, 449, 1220
Bse8I	GATNNNNATC	1 cut(s)	695
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	3 cut(s)	270, 508, 820
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	1 cut(s)	977
BseMII	CTCAG	2 cut(s)	572, 906
BseNI	ACTGG	4 cut(s)	107, 126, 449, 1220
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	839
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	945, 1142
BshNI	GGYRCC	1 cut(s)	1098
BshVI	ATCGAT	1 cut(s)	689
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	1127
BslI	CCNNNNNNNGG	1 cut(s)	977
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	1127
BsmI	GAATGC	1 cut(s)	960
BsnI	GGCC	2 cut(s)	945, 1142
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	4 cut(s)	491, 949, 1033, 1237
BspANI	GGCC	2 cut(s)	945, 1142
BspCNI	CTCAG	2 cut(s)	571, 905
BspDI	ATCGAT	1 cut(s)	689
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	1 cut(s)	1100
BspMAI	CTGCAG	2 cut(s)	117, 829
BspMI	ACCTGC	1 cut(s)	949
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	890
BspQI	GCTCTTC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	1098
BspTI	CTTAAG	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	736
BsrI	ACTGG	4 cut(s)	107, 126, 449, 1220
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
BssT1I	CCWWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	212, 1201
Bst6I	CTCTTC	1 cut(s)	85
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	736
BstC8I	GCNNGC	4 cut(s)	496, 671, 915, 1033
BstDEI	CTNAG	4 cut(s)	514, 558, 892, 1094
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	3 cut(s)	270, 508, 820
BstKTI	GATC	6 cut(s)	304, 388, 529, 850, 865, 898
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
BstMCI	CGRYCG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	488
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSFI	CTRYAG	2 cut(s)	113, 825
BstV1I	GCAGC	1 cut(s)	839
BstV2I	GAAGAC	1 cut(s)	1082
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
Bsu15I	ATCGAT	1 cut(s)	689
BsuI	GTATCC	2 cut(s)	268, 978
BsuRI	GGCC	2 cut(s)	945, 1142
BsuTUI	ATCGAT	1 cut(s)	689
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	3 cut(s)	270, 508, 820
BveI	ACCTGC	1 cut(s)	949
Cac8I	GCNNGC	4 cut(s)	496, 671, 915, 1033
CaiI	CAGNNNCTG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	804
Cfr13I	GGNCC	1 cut(s)	1141
ClaI	ATCGAT	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	511, 737
CviAII	CATG	7 cut(s)	352, 485, 533, 749, 805, 930, 1225
CviQI	GTAC	2 cut(s)	511, 737
DdeI	CTNAG	4 cut(s)	514, 558, 892, 1094
DpnI	GATC	6 cut(s)	303, 387, 528, 849, 864, 897
DpnII	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	7 cut(s)	355, 488, 536, 752, 808, 933, 1228
FaqI	GGGAC	1 cut(s)	1127
FatI	CATG	7 cut(s)	351, 484, 532, 748, 804, 929, 1224
FauI	CCCGC	1 cut(s)	1040
FauNDI	CATATG	2 cut(s)	163, 358
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	492, 828
FokI	GGATG	3 cut(s)	277, 515, 807
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	492, 828
FspBI	CTAG	2 cut(s)	495, 713
GluI	GCNGC	2 cut(s)	492, 828
HaeIII	GGCC	2 cut(s)	945, 1142
HapII	CCGG	1 cut(s)	364
Hin1II	CATG	7 cut(s)	355, 488, 536, 752, 808, 933, 1228
HincII	GTYRAC	2 cut(s)	985, 1234
HindII	GTYRAC	2 cut(s)	985, 1234
HindIII	AAGCTT	1 cut(s)	1128
HinfI	GANTC	5 cut(s)	52, 571, 629, 797, 1207
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	4 cut(s)	17, 392, 607, 776
Hpy166II	GTNNAC	4 cut(s)	739, 985, 1197, 1234
Hpy188I	TCNGA	6 cut(s)	409, 858, 874, 895, 1110, 1212
Hpy188III	TCNNGA	3 cut(s)	560, 805, 845
Hpy8I	GTNNAC	4 cut(s)	739, 985, 1197, 1234
HpyAV	CCTTC	3 cut(s)	455, 786, 1117
HpyCH4III	ACNGT	2 cut(s)	212, 1201
HpyCH4IV	ACGT	1 cut(s)	835
HpyF3I	CTNAG	4 cut(s)	514, 558, 892, 1094
HpySE526I	ACGT	1 cut(s)	835
Hsp92II	CATG	7 cut(s)	355, 488, 536, 752, 808, 933, 1228
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	839
LweI	GCATC	2 cut(s)	420, 762
MaeI	CTAG	2 cut(s)	495, 713
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	4 cut(s)	49, 98, 117, 715
MalI	GATC	6 cut(s)	303, 387, 528, 849, 864, 897
MboI	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
MboII	GAAGA	5 cut(s)	72, 307, 422, 613, 1082
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	945
MluCI	AATT	7 cut(s)	469, 519, 755, 790, 924, 1003, 1145
MluNI	TGGCCA	1 cut(s)	945
MlyI	GAGTC	2 cut(s)	46, 806
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	7 cut(s)	67, 195, 332, 591, 1074, 1104, 1173
Mox20I	TGGCCA	1 cut(s)	945
MroXI	GAANNNNTTC	1 cut(s)	925
MscI	TGGCCA	1 cut(s)	945
MseI	TTAA	5 cut(s)	198, 333, 426, 441, 1133
MslI	CAYNNNNRTG	2 cut(s)	188, 537
Msp20I	TGGCCA	1 cut(s)	945
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	364
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	960
NcoI	CCATGG	1 cut(s)	532
NdeI	CATATG	2 cut(s)	163, 358
NdeII	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
NheI	GCTAGC	1 cut(s)	494
NlaIII	CATG	7 cut(s)	355, 488, 536, 752, 808, 933, 1228
NlaIV	GGNNCC	1 cut(s)	1100
NmuCI	GTSAC	3 cut(s)	49, 98, 715
NspI	RCATGY	1 cut(s)	488
PagI	TCATGA	1 cut(s)	804
PciI	ACATGT	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	85
PctI	GAATGC	1 cut(s)	960
PdmI	GAANNNNTTC	1 cut(s)	925
PfeI	GAWTC	3 cut(s)	571, 629, 1207
PkrI	GCNGC	2 cut(s)	493, 829
Ple19I	CGATCG	1 cut(s)	304
PleI	GAGTC	2 cut(s)	46, 805
PpsI	GAGTC	2 cut(s)	46, 805
PscI	ACATGT	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	1100
PspPI	GGNCC	1 cut(s)	1141
PstI	CTGCAG	2 cut(s)	117, 829
PstNI	CAGNNNCTG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	895
PvuI	CGATCG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	512, 738
RsaNI	GTAC	2 cut(s)	511, 737
RseI	CAYNNNNRTG	2 cut(s)	188, 537
SacI	GAGCTC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	5 cut(s)	198, 333, 426, 441, 1133
SatI	GCNGC	2 cut(s)	492, 828
Sau3AI	GATC	6 cut(s)	301, 385, 526, 847, 862, 895
Sau96I	GGNCC	1 cut(s)	1141
SchI	GAGTC	2 cut(s)	46, 806
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	420, 762
SfcI	CTRYAG	2 cut(s)	113, 825
SmiMI	CAYNNNNRTG	2 cut(s)	188, 537
SmlI	CTYRAG	2 cut(s)	425, 1065
SmoI	CTYRAG	2 cut(s)	425, 1065
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	7 cut(s)	469, 519, 755, 790, 924, 1003, 1145
SsiI	CCGC	4 cut(s)	491, 949, 1033, 1237
SspMI	CTAG	2 cut(s)	495, 713
SstI	GAGCTC	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	212, 1201
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	1 cut(s)	689
TasI	AATT	7 cut(s)	469, 519, 755, 790, 924, 1003, 1145
TatI	WGTACW	2 cut(s)	510, 736
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	3 cut(s)	571, 629, 1207
Tru1I	TTAA	5 cut(s)	198, 333, 426, 441, 1133
Tru9I	TTAA	5 cut(s)	198, 333, 426, 441, 1133
TseFI	GTSAC	3 cut(s)	49, 98, 715
TseI	GCWGC	1 cut(s)	827
Tsp45I	GTSAC	3 cut(s)	49, 98, 715
TspDTI	ATGAA	6 cut(s)	153, 281, 435, 563, 675, 918
TspGWI	ACGGA	1 cut(s)	240
Vha464I	CTTAAG	1 cut(s)	425
XapI	RAATTY	3 cut(s)	790, 924, 1003
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	925
XspI	CTAG	2 cut(s)	495, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.