Rh7DG338800

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002130
Physical Location & Seq
Reverse (-)
44627694 .. 44630662
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG338800.1

Sequence Viewer

Length: 1152 bp
ATGAATATGATGTATCTTGTGTTCTGGTTTGTCTTGAAAAATATATTTTGTTTCCTGGTTGATTGTTGTTTCTGCCAGAGGGACAAAAGGGAGGAAGCTTTAAGATTGGCCCAATTATCAGCTGAAAAACCTCATTTCTCTCACTGTATGGAGTGGCTTCTGTTTACTGTATTTGAGGCAGACATATCCAGGCAAAGTGCAAACAAGAATCAGAGCTCTGTGCCTAAATATGCAAAGAATTCCTCTCTTTTAGAGAAGACATGTGATTTGCTCAGAAATTTTCCGGAGTATTTTGATGTGGTTGTCAGTGTTGCAAGAAAAACTGATGGTCGACATTGGGCGGATTTGTTCACTGCTGCTGGGAGATCAACAGAGTTGTTTGAGGAATGCTTCCAACGCAGATGGTACCGCACTGCTGCATGCTATATACTTGTGATTGCTAAGCTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTGCGTTTATTACAGGCAACACTGGACGAATCTTTATATGAACTCGCTGGGGAGCTGGTGAGGTTCTTGCTGAGATCTGGAAGGGAATATGAACAAGCATCAACAGATTCAGACAGACAAGCTCCATCATCTCCCAGATTCTTGGGTTATTTCGGTTTTCGTTCTAGTAATAGAAAACAGTCCTTGGATAAAAGCTCTTCATTCAAGGAGCAGAGTGCACATGTTGCTTCTGTGAAGAACATTTTAGAAAGCCATGCTAGCTATTTGATGTCAGGAAAAGAGCTTTCAAAGCTAGTTGCATTTGTGAAAGGCACTCAGTTTGATTTAGTGGAATATCTTCAGCGAGAGAGATATGGATGTGCTCGTTTGGAGAATTTCGCTTCAGGACTTGAATTAATTGGACAAAAGCTCCAAATGAGTATACTGCAGAGTCGATTTGATGCAGAATTTCTTTTGGCACACATGTGCTCTGTCAAGTTCAAAGAATGGATAGTGGTCCTTGCCACTCTTTTAAGACGATCTGAGGTTCTATTTGATCTTTTCCAGCATGATATGCGGTTGTGGAAAGCATATAGCATCACCCTGCAGTCACATCCCGCCTTTACTGAATACCATGATCTGCTTGGAGATTTGGAAGATCAACTTTCCTCCATTGGAACTTCTCAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

383

Amino Acids

44.28

Weight (kDa)

7.09

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIC1 PF07064 26 - 194 2.2e-46 RIC1 C-terminal alpha solenoid region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 405
AccI GTMKAC 2 cut(s) 331, 898
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 4 cut(s) 341, 409, 1033, 1074
AcsI RAATTY 4 cut(s) 238, 277, 850, 923
AcuI CTGAAG 2 cut(s) 800, 843
AfaI GTAC 2 cut(s) 407, 470
AflIII ACRYGT 3 cut(s) 260, 697, 939
AgsI TTSAA 6 cut(s) 37, 449, 682, 765, 869, 958
AjnI CCWGG 2 cut(s) 54, 188
AleI CACNNNNGTG 1 cut(s) 940
Alw21I GWGCWC 4 cut(s) 218, 697, 841, 947
Alw44I GTGCAC 1 cut(s) 693
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 2 cut(s) 356, 416
ApoI RAATTY 4 cut(s) 238, 277, 850, 923
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AseI ATTAAT 1 cut(s) 872
Asp700I GAANNNNTTC 1 cut(s) 813
Asp718I GGTACC 1 cut(s) 405
AspS9I GGNCC 3 cut(s) 109, 452, 973
AsuHPI GGTGA 2 cut(s) 547, 1048
AsuNHI GCTAGC 1 cut(s) 734
AvaII GGWCC 2 cut(s) 452, 973
BaeGI GKGCMC 1 cut(s) 697
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 4 cut(s) 218, 697, 841, 947
BbvI GCAGC 2 cut(s) 343, 403
BccI CCATC 3 cut(s) 320, 396, 610
BciT130I CCWGG 2 cut(s) 56, 190
BfaI CTAG 3 cut(s) 642, 735, 770
BfmI CTRYAG 2 cut(s) 902, 1061
BglII AGATCT 1 cut(s) 551
BisI GCNGC 2 cut(s) 357, 417
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 2 cut(s) 358, 418
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 2 cut(s) 56, 190
Bme18I GGWCC 2 cut(s) 452, 973
BmgT120I GGNCC 3 cut(s) 109, 452, 973
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 56, 190
BmsI GCATC 3 cut(s) 584, 907, 1062
BmtI GCTAGC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 1125
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bse1I ACTGG 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 2 cut(s) 56, 190
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 2 cut(s) 839, 1069
BseMII CTCAG 4 cut(s) 286, 539, 806, 990
BseNI ACTGG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 2 cut(s) 343, 403
BseYI CCCAGC 2 cut(s) 359, 524
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 405
BsiHKAI GWGCWC 4 cut(s) 218, 697, 841, 947
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 4 cut(s) 218, 697, 841, 947
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 4 cut(s) 341, 409, 1033, 1074
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 4 cut(s) 285, 540, 805, 991
BspEI TCCGGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 407
BspMAI CTGCAG 2 cut(s) 906, 1065
BspOI GCTAGC 1 cut(s) 738
BspQI GCTCTTC 1 cut(s) 679
BspT107I GGYRCC 1 cut(s) 405
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
BssNAI GTATAC 1 cut(s) 899
BssT1I CCWWGG 1 cut(s) 660
Bst1107I GTATAC 1 cut(s) 899
Bst2UI CCWGG 2 cut(s) 56, 190
Bst4CI ACNGT 4 cut(s) 146, 169, 473, 657
Bst6I CTCTTC 1 cut(s) 679
BstAPI GCANNNNNTGC 2 cut(s) 701, 1030
BstC8I GCNNGC 2 cut(s) 421, 736
BstDEI CTNAG 5 cut(s) 272, 441, 548, 792, 999
BstF5I GGATG 2 cut(s) 839, 1069
BstKTI GATC 6 cut(s) 368, 554, 998, 1015, 1096, 1117
BstMBI GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
BstMWI GCNNNNNNNGC 5 cut(s) 396, 701, 735, 766, 1030
BstNI CCWGG 2 cut(s) 56, 190
BstNSI RCATGY 4 cut(s) 264, 423, 701, 943
BstSCI CCNGG 2 cut(s) 54, 188
BstSFI CTRYAG 2 cut(s) 902, 1061
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 2 cut(s) 343, 403
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 551
BstXI CCANNNNNNTGG 1 cut(s) 619
BstYI RGATCY 1 cut(s) 551
BstZ17I GTATAC 1 cut(s) 899
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 839, 1069
BtsI GCAGTG 2 cut(s) 351, 411
BtsIMutI CAGTG 5 cut(s) 142, 313, 351, 411, 497
Cac8I GCNNGC 2 cut(s) 421, 736
Cfr13I GGNCC 3 cut(s) 109, 452, 973
Csp6I GTAC 2 cut(s) 406, 469
CviAII CATG 7 cut(s) 261, 420, 698, 731, 940, 1025, 1091
CviQI GTAC 2 cut(s) 406, 469
DdeI CTNAG 5 cut(s) 272, 441, 548, 792, 999
DpnI GATC 6 cut(s) 367, 553, 997, 1014, 1095, 1116
DpnII GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
EciI GGCGGA 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 452, 973
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 800, 843
EcoICRI GAGCTC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 54, 188
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 7 cut(s) 264, 423, 701, 734, 943, 1028, 1094
FalI AAGNNNNNCTT 2 cut(s) 1104, 1136
FaqI GGGAC 1 cut(s) 95
FatI CATG 7 cut(s) 260, 419, 697, 730, 939, 1024, 1090
FauI CCCGC 1 cut(s) 1081
FblI GTMKAC 2 cut(s) 331, 898
Fnu4HI GCNGC 2 cut(s) 357, 417
FokI GGATG 2 cut(s) 846, 1056
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 357, 417
FspBI CTAG 3 cut(s) 642, 735, 770
GluI GCNGC 2 cut(s) 357, 417
GsaI CCCAGC 2 cut(s) 363, 528
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 284
Hin1II CATG 7 cut(s) 264, 423, 701, 734, 943, 1028, 1094
HincII GTYRAC 1 cut(s) 332
HindII GTYRAC 1 cut(s) 332
HindIII AAGCTT 2 cut(s) 96, 443
HinfI GANTC 5 cut(s) 208, 506, 584, 615, 907
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 547, 1048
Hpy166II GTNNAC 5 cut(s) 165, 332, 351, 695, 899
Hpy188I TCNGA 4 cut(s) 213, 275, 589, 1000
Hpy188III TCNNGA 6 cut(s) 34, 284, 555, 750, 861, 1142
Hpy8I GTNNAC 5 cut(s) 165, 332, 351, 695, 899
HpyAV CCTTC 2 cut(s) 443, 552
HpyCH4III ACNGT 4 cut(s) 146, 169, 473, 657
HpyCH4V TGCA 9 cut(s) 200, 233, 314, 419, 695, 776, 904, 920, 1063
HpyF10VI GCNNNNNNNGC 5 cut(s) 396, 701, 735, 766, 1030
HpyF3I CTNAG 5 cut(s) 272, 441, 548, 792, 999
Hsp92II CATG 7 cut(s) 264, 423, 701, 734, 943, 1028, 1094
Kpn2I TCCGGA 1 cut(s) 283
KpnI GGTACC 1 cut(s) 409
Kzo9I GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
LguI GCTCTTC 1 cut(s) 679
LmnI GCTCC 4 cut(s) 529, 604, 685, 891
Lsp1109I GCAGC 2 cut(s) 343, 403
LweI GCATC 3 cut(s) 584, 907, 1062
MaeI CTAG 3 cut(s) 642, 735, 770
MaeIII GTNAC 1 cut(s) 1065
MalI GATC 6 cut(s) 367, 553, 997, 1014, 1095, 1116
MboI GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
MboII GAAGA 5 cut(s) 268, 666, 724, 806, 1124
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 4 cut(s) 218, 697, 841, 947
MluCI AATT 7 cut(s) 113, 238, 277, 850, 869, 873, 923
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 9 cut(s) 72, 85, 141, 169, 253, 376, 531, 994, 1135
MroI TCCGGA 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 3 cut(s) 101, 872, 989
MslI CAYNNNNRTG 1 cut(s) 940
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 56, 190
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 2 cut(s) 56, 190
MwoI GCNNNNNNNGC 5 cut(s) 396, 701, 735, 766, 1030
NdeII GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
NheI GCTAGC 1 cut(s) 734
NlaIII CATG 7 cut(s) 264, 423, 701, 734, 943, 1028, 1094
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 1065
NspI RCATGY 4 cut(s) 264, 423, 701, 943
OliI CACNNNNGTG 1 cut(s) 940
PaeI GCATGC 1 cut(s) 423
PciI ACATGT 3 cut(s) 260, 697, 939
PciSI GCTCTTC 1 cut(s) 679
PctI GAATGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 4 cut(s) 208, 506, 584, 615
PkrI GCNGC 2 cut(s) 358, 418
PleI GAGTC 1 cut(s) 915
PpsI GAGTC 1 cut(s) 915
PpuMI RGGWCCY 1 cut(s) 452
PscI ACATGT 3 cut(s) 260, 697, 939
PshBI ATTAAT 1 cut(s) 872
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 54, 188
PspFI CCCAGC 2 cut(s) 359, 524
PspGI CCWGG 2 cut(s) 54, 188
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 3 cut(s) 109, 452, 973
PspPPI RGGWCCY 1 cut(s) 452
PsrI GAACNNNNNNTAC 1 cut(s) 37
PstI CTGCAG 2 cut(s) 906, 1065
PsuI RGATCY 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 407, 470
RsaNI GTAC 2 cut(s) 406, 469
RseI CAYNNNNRTG 1 cut(s) 940
SacI GAGCTC 1 cut(s) 218
SalI GTCGAC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 679
SaqAI TTAA 3 cut(s) 101, 872, 989
SatI GCNGC 2 cut(s) 357, 417
Sau3AI GATC 6 cut(s) 365, 551, 995, 1012, 1093, 1114
Sau96I GGNCC 3 cut(s) 109, 452, 973
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 2 cut(s) 56, 190
SduI GDGCHC 4 cut(s) 218, 697, 841, 947
SfaNI GCATC 3 cut(s) 584, 907, 1062
SfcI CTRYAG 2 cut(s) 902, 1061
SinI GGWCC 2 cut(s) 452, 973
SmiMI CAYNNNNRTG 1 cut(s) 940
SmlI CTYRAG 1 cut(s) 1140
SmoI CTYRAG 1 cut(s) 1140
SphI GCATGC 1 cut(s) 423
Sse9I AATT 7 cut(s) 113, 238, 277, 850, 869, 873, 923
SsiI CCGC 4 cut(s) 341, 409, 1033, 1074
SspMI CTAG 3 cut(s) 642, 735, 770
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 54, 188
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 4 cut(s) 146, 169, 473, 657
TaqI TCGA 2 cut(s) 331, 910
TasI AATT 7 cut(s) 113, 238, 277, 850, 869, 873, 923
TatI WGTACW 1 cut(s) 468
TfiI GAWTC 4 cut(s) 208, 506, 584, 615
Tru1I TTAA 3 cut(s) 101, 872, 989
Tru9I TTAA 3 cut(s) 101, 872, 989
TscAI CASTG 5 cut(s) 149, 313, 358, 418, 504
TseFI GTSAC 1 cut(s) 1065
TseI GCWGC 2 cut(s) 356, 416
Tsp45I GTSAC 1 cut(s) 1065
TspDTI ATGAA 4 cut(s) 17, 531, 582, 666
TspRI CASTG 5 cut(s) 149, 313, 358, 418, 504
VneI GTGCAC 1 cut(s) 693
VpaK11BI GGWCC 2 cut(s) 452, 973
VspI ATTAAT 1 cut(s) 872
XapI RAATTY 4 cut(s) 238, 277, 850, 923
XceI RCATGY 4 cut(s) 264, 423, 701, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XmiI GTMKAC 2 cut(s) 331, 898
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 3 cut(s) 642, 735, 770
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.