Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002130

Physical Location & Seq

Genomic Coordinates Forward (+)

51327114 .. 51329718

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTCATCGATGTCTATCAAGATTATATACTAGTCACATATCGCCCATTTGATGTACACATATTCCATGTGAAATTATTTGGTGAGTTGACGCCTTTCACTACTCCAAATTTAGAGATGTTTGGGTTACATGTGGTCAATCAAAGGAAAAATCAAATCTTACTGAGAAAAATTTCATGGTTAGATTATGGCCACCACAGAATGCAGGTTTGGTATCCATCTCTGCGTGTTGACCCTTTTATGCAGGAGGATTTCTTGCAGAGAATGTCATTTTCAGCCTGCAGAGAGTTTCCATTTTTTGAGCCAACACCTCAAGCTCAAACTATATTACATTGTCTTCTAAGGCACCTTATTCAGGGACAAAAGGGAGGAAGCTTTAAGGTTGGCCAATTATCAGCAGAAAAACCTTATTTCTCTCATTGTATGGAGTGGCTTCTGTTTACTGTATTTGATCGGACATATCCAGGCAAAGTGCTCTGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

161

Amino Acids

19.14

Weight (kDa)

8.37

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61480 AT3G61480 AT5G28350 AT5G28350
fragaria_vesca	FvH4_5g28900 FvH4_5g28900 FvH4_5g28900
malus_domestica	MD01G1067900.v1.1 MD01G1068000.v1.1 MD11G1239500.v1.1
prunus_persica	Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1
pyrus_communis	pycom01g09700 pycom01g09710 pycom07g13050 pycom11g21100
rosa_chinensis	RchiOBHm_Chr1g0356891 RchiOBHm_Chr1g0356901 RchiOBHm_Chr1g0356911 RchiOBHm_Chr1g0356921 RchiOBHm_Chr1g0356931 RchiOBHm_Chr7g0221211
rosa_laevigata	RLG00000002173 RLG00000028071
rosa_multiflora	Rmu_sc0000324.1_g000014
rosa_roxburghii	Rroxscaffold_3G00238580 Rroxscaffold_4G00299210
rosa_rugosa	Rorug01G0251900 Rorug01G0252000 Rorug07G0201300
rosa_samantha	Rh1AG266600 Rh1AG266700 Rh1BG234000 Rh1CG250100 Rh1DG261500 Rh6DG315800 Rh7AG340100 Rh7BG331300 Rh7CG358100 Rh7DG338800 Rh7DG338900
rosa_wichuraiana	Rw1G023540 Rw7G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	345
AcoI	YGGCCR	2 cut(s)	190, 385
AcsI	RAATTY	2 cut(s)	109, 171
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	130
AhlI	ACTAGT	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	2 cut(s)	317, 375
AluI	AGCT	2 cut(s)	317, 375
Alw21I	GWGCWC	1 cut(s)	477
AoxI	GGCC	2 cut(s)	190, 385
ApoI	RAATTY	2 cut(s)	109, 171
Asp700I	GAANNNNTTC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	95
BalI	TGGCCA	2 cut(s)	192, 387
BanI	GGYRCC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	477
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	465
BciVI	GTATCC	1 cut(s)	225
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	9
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	192, 387
BshNI	GGYRCC	1 cut(s)	345
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	192, 387
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	451
BspANI	GGCC	2 cut(s)	192, 387
BspCNI	CTCAG	1 cut(s)	156
BspDI	ATCGAT	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	347
BspMAI	CTGCAG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	55
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	164, 341
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstKTI	GATC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	451
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	329
Bsu15I	ATCGAT	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	192, 387
BsuTUI	ATCGAT	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	3 cut(s)	68, 131, 177
CviJI	RGCY	7 cut(s)	192, 278, 304, 317, 375, 387, 433
CviKI_1	RGCY	7 cut(s)	192, 278, 304, 317, 375, 387, 433
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	164, 341
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	190, 385
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	463
FaeI	CATG	3 cut(s)	71, 134, 180
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	67, 130, 176
FspBI	CTAG	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	192, 387
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	71, 134, 180
HincII	GTYRAC	2 cut(s)	90, 232
HindII	GTYRAC	2 cut(s)	90, 232
HindIII	AAGCTT	1 cut(s)	373
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	4 cut(s)	58, 90, 232, 441
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	4 cut(s)	58, 90, 232, 441
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	4 cut(s)	205, 244, 259, 282
HpyF3I	CTNAG	2 cut(s)	164, 341
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	3 cut(s)	71, 134, 180
Kzo9I	GATC	1 cut(s)	451
LpnPI	CCDG	6 cut(s)	191, 230, 292, 341, 450, 477
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	34, 126
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	2 cut(s)	192, 387
MluCI	AATT	4 cut(s)	74, 109, 171, 389
MluNI	TGGCCA	2 cut(s)	192, 387
MnlI	CCTC	3 cut(s)	241, 321, 362
Mox20I	TGGCCA	2 cut(s)	192, 387
MroXI	GAANNNNTTC	1 cut(s)	172
MscI	TGGCCA	2 cut(s)	192, 387
MseI	TTAA	2 cut(s)	378, 484
Msp20I	TGGCCA	2 cut(s)	192, 387
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	465
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	3 cut(s)	71, 134, 180
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	134
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	172
PscI	ACATGT	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	378, 484
Sau3AI	GATC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	7 cut(s)	210, 313, 319, 351, 377, 384, 409
SfcI	CTRYAG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SpeI	ACTAGT	1 cut(s)	31
Sse9I	AATT	4 cut(s)	74, 109, 171, 389
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	74, 109, 171, 389
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	378, 484
Tru9I	TTAA	2 cut(s)	378, 484
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	2 cut(s)	109, 171
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.