Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002130

Physical Location & Seq

Genomic Coordinates Forward (+)

49400717 .. 49406738

Gene Structure 6022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAAGACACTGGACCTTGGGATGAATATGGATACAGGCTCTCTGCTATTGAAGAACGATCATTGGAGAGTATTCTTGGATTTTTATTCAGTAAATGTTGCCTTAACAGAGGAGTTTCAGGCATGACATATGTCCGGCAAGTGATATATGGTGATAATCGGTTGCTTGTTGTTTTGTCTGAAGATACTGATGAACTTCAGATGCTACATCTTAACCTTCCAGTTTCTTATATCTCACAAAATTGGTCAGTTCAACATGTAGCGGCTAGCAAGGATGGAATGTACTTAGCAATTGCTGATCTCCATGGTGGTGTATTTGGAGACATTACTCAGGAACAGAAGATTCAGAGCAAAGTTTTGTTATGGGTGAGGAAGATTGTTGTTGTCTGCAACTACATTGATTCTACTAACACATATGAATTTCTTTTCTATCCAAGATATTACCTTGATCAGAGCTCACTACTTTATTATATACTAGTCACATATCGCCCATTTGATGTACACATATTCCATGTGAAATTATTTGGTGAGTTGACGCCTTTCACTACTCCAAATTTAGAGTCAATCATGACTGCAAAGAGCCATCCTGCAGGCATACGTTTTGTTCCAGATCAGCTTCCGAGAGATCACATTTCAGATAATCATATGTCTAAATCAGATCCTTTACTATTCCAAAATGACACACGACTCTTAATAGATGTTTGGGTTACATGTGGTCAATCAAAGGAAAAATCAAATCTTACTGAGAAAAATTTCATGGTTTGGTATCCATCTCTGGGAGTTGACCCTTTTATGCAGGAGGATTTCTTGCAGAGAATGTCATTTTCAGCCTGCAGAGAGTTTCCATTTTTTGAGCCAACACCTCAAGCTCAAACTATATTACATTGTCTTCTAAGGCACCTTATTCAGGGACAAAAGGGAGGAAGCTTTAAGGTTGGCCAATTATCAGCAGAAAAACCTCATTTCTCTCATTGTATGGAGTGGCTTCTGTTTACTGTATTTGATCGGACATATCCAGACTATGATATTCTTAGAAATTTTCTGGAGTATTTTGATGTGGTTGTCAGTGTTGCAAGAAAAACTGATGGTCGACATTGGGCAGATTTGTGCACTGCTGCTGGGTTCTTTGAGGAATGCTTCCAATGTAGATGGCCCTGCACTGCTGTATGCTATATACTTGTGATTCCTAATCTTGAAGGTCCTGCTGTCAGTCATCAGTACTGTGCTTTGCCATTGACTGAGTCTGTGAATGAGTATGTACTGAGTATGTGCAGGCAATACTGGACAAATGTTTATATCAACTCGCTGGGAAGCTGGTATGTCATTGGAAATTTCATGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

447

Amino Acids

51.74

Weight (kDa)

5.44

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RIC1_2nd	PF25440	51 - 162	2.6e-20	RIC1 second beta propeller domain
RIC1	PF07064	295 - 425	2.9e-16	RIC1 C-terminal alpha solenoid region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61480 AT3G61480 AT5G28350 AT5G28350
fragaria_vesca	FvH4_5g28900 FvH4_5g28900 FvH4_5g28900
malus_domestica	MD01G1067900.v1.1 MD01G1068000.v1.1 MD11G1239500.v1.1
prunus_persica	Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1
pyrus_communis	pycom01g09700 pycom01g09710 pycom07g13050 pycom11g21100
rosa_chinensis	RchiOBHm_Chr1g0356891 RchiOBHm_Chr1g0356901 RchiOBHm_Chr1g0356911 RchiOBHm_Chr1g0356921 RchiOBHm_Chr1g0356931 RchiOBHm_Chr7g0221211
rosa_laevigata	RLG00000002173 RLG00000028071
rosa_multiflora	Rmu_sc0000324.1_g000014
rosa_roxburghii	Rroxscaffold_3G00238580 Rroxscaffold_4G00299210
rosa_rugosa	Rorug01G0251900 Rorug01G0252000 Rorug07G0201300
rosa_samantha	Rh1AG266600 Rh1AG266700 Rh1BG234000 Rh1CG250100 Rh1DG261500 Rh6DG315800 Rh7AG340100 Rh7BG331300 Rh7CG358100 Rh7DG338800 Rh7DG338900
rosa_wichuraiana	Rw1G023540 Rw7G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	897
AccI	GTMKAC	1 cut(s)	1090
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	5 cut(s)	419, 553, 751, 1036, 1330
AcuI	CTGAAG	2 cut(s)	182, 201
AcyI	GRCGYC	1 cut(s)	536
AfaI	GTAC	4 cut(s)	284, 501, 1220, 1260
AfiI	CCNNNNNNNGG	2 cut(s)	776, 907
AflIII	ACRYGT	2 cut(s)	256, 710
AgsI	TTSAA	3 cut(s)	53, 254, 1196
AhlI	ACTAGT	1 cut(s)	475
AluBI	AGCT	5 cut(s)	456, 616, 869, 927, 1314
AluI	AGCT	5 cut(s)	456, 616, 869, 927, 1314
Alw21I	GWGCWC	2 cut(s)	458, 1112
Alw26I	GTCTC	1 cut(s)	315
Alw44I	GTGCAC	1 cut(s)	1108
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	2 cut(s)	937, 1151
ApaLI	GTGCAC	1 cut(s)	1108
ApeKI	GCWGC	1 cut(s)	1115
ApoI	RAATTY	5 cut(s)	419, 553, 751, 1036, 1330
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp700I	GAANNNNTTC	1 cut(s)	752
AspS9I	GGNCC	3 cut(s)	14, 1152, 1199
AsuHPI	GGTGA	3 cut(s)	164, 379, 539
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	14, 1199
BaeGI	GKGCMC	1 cut(s)	1112
BalI	TGGCCA	1 cut(s)	939
BanI	GGYRCC	1 cut(s)	897
BanII	GRGCYC	1 cut(s)	458
BbsI	GAAGAC	2 cut(s)	12, 881
Bbv12I	GWGCWC	2 cut(s)	458, 1112
BbvI	GCAGC	1 cut(s)	1102
BccI	CCATC	5 cut(s)	269, 591, 778, 1079, 1143
BciVI	GTATCC	2 cut(s)	26, 777
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	315
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	2 cut(s)	267, 476
BfmI	CTRYAG	2 cut(s)	588, 832
BfuI	GTATCC	2 cut(s)	26, 777
BisI	GCNGC	2 cut(s)	264, 1116
BlsI	GCNGC	2 cut(s)	265, 1117
BmcAI	AGTACT	1 cut(s)	1220
Bme18I	GGWCC	2 cut(s)	14, 1199
BmgT120I	GGNCC	3 cut(s)	14, 1152, 1199
BmiI	GGNNCC	1 cut(s)	899
BmsI	GCATC	1 cut(s)	192
BmtI	GCTAGC	1 cut(s)	270
BoxI	GACNNNNGTC	1 cut(s)	131
BpiI	GAAGAC	2 cut(s)	12, 881
BpmI	CTGGAG	1 cut(s)	1064
BpuEI	CTTGAG	1 cut(s)	849
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	17, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	776, 907
Bse1I	ACTGG	3 cut(s)	16, 221, 1286
BseDI	CCNNGG	2 cut(s)	17, 304
BseGI	GGATG	3 cut(s)	28, 280, 583
BseLI	CCNNNNNNNGG	2 cut(s)	776, 907
BseMII	CTCAG	4 cut(s)	344, 735, 1230, 1253
BseNI	ACTGG	3 cut(s)	16, 221, 1286
BseRI	GAGGAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	1112
BseXI	GCAGC	1 cut(s)	1102
BseYI	CCCAGC	2 cut(s)	1118, 1306
BsgI	GTGCAG	2 cut(s)	1141, 1291
BshFI	GGCC	2 cut(s)	939, 1153
BshNI	GGYRCC	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	458, 1112
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	924
BslI	CCNNNNNNNGG	2 cut(s)	776, 907
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	924
BsmI	GAATGC	1 cut(s)	1139
BsnI	GGCC	2 cut(s)	939, 1153
Bsp1286I	GDGCHC	2 cut(s)	458, 1112
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	939, 1153
BspCNI	CTCAG	4 cut(s)	343, 736, 1231, 1254
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	899
BspMAI	CTGCAG	2 cut(s)	592, 836
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	897
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	16, 221, 1286
BssECI	CCNNGG	2 cut(s)	17, 304
BssMI	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
BssNI	GRCGYC	1 cut(s)	536
BssT1I	CCWWGG	2 cut(s)	17, 304
Bst4CI	ACNGT	2 cut(s)	997, 1223
BstACI	GRCGYC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	4 cut(s)	268, 592, 832, 1274
BstDEI	CTNAG	7 cut(s)	286, 330, 744, 893, 1031, 1239, 1262
BstDSI	CCRYGG	1 cut(s)	304
BstENI	CCTNNNNNAGG	1 cut(s)	905
BstF5I	GGATG	3 cut(s)	28, 280, 583
BstKTI	GATC	7 cut(s)	62, 301, 451, 613, 628, 661, 1006
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
BstNSI	RCATGY	2 cut(s)	260, 714
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSFI	CTRYAG	2 cut(s)	588, 832
BstSLI	GKGCMC	1 cut(s)	1112
BstV1I	GCAGC	1 cut(s)	1102
BstV2I	GAAGAC	2 cut(s)	12, 881
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuI	GTATCC	2 cut(s)	26, 777
BsuRI	GGCC	2 cut(s)	939, 1153
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	3 cut(s)	28, 280, 583
BtsI	GCAGTG	2 cut(s)	1110, 1158
BtsIMutI	CAGTG	4 cut(s)	9, 1072, 1110, 1158
Cac8I	GCNNGC	4 cut(s)	268, 592, 832, 1274
CciI	TCATGA	1 cut(s)	567
Cfr13I	GGNCC	3 cut(s)	14, 1152, 1199
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	4 cut(s)	283, 500, 1219, 1259
CviAII	CATG	8 cut(s)	124, 257, 305, 512, 568, 711, 757, 1336
CviQI	GTAC	4 cut(s)	283, 500, 1219, 1259
DdeI	CTNAG	7 cut(s)	286, 330, 744, 893, 1031, 1239, 1262
DpnI	GATC	7 cut(s)	61, 300, 450, 612, 627, 660, 1005
DpnII	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
EaeI	YGGCCR	1 cut(s)	937
Ecl136II	GAGCTC	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	17, 304
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	14, 1199
Eco53kI	GAGCTC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	182, 201
EcoICRI	GAGCTC	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	905
EcoO109I	RGGNCCY	1 cut(s)	1199
EcoT14I	CCWWGG	2 cut(s)	17, 304
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	2 cut(s)	17, 304
FaeI	CATG	8 cut(s)	127, 260, 308, 515, 571, 714, 760, 1339
FaqI	GGGAC	1 cut(s)	924
FatI	CATG	8 cut(s)	123, 256, 304, 511, 567, 710, 756, 1335
FauNDI	CATATG	3 cut(s)	130, 415, 645
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	1090
Fnu4HI	GCNGC	2 cut(s)	264, 1116
FokI	GGATG	3 cut(s)	35, 287, 570
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	2 cut(s)	264, 1116
FspBI	CTAG	2 cut(s)	267, 476
GluI	GCNGC	2 cut(s)	264, 1116
GsaI	CCCAGC	2 cut(s)	1122, 1310
GsuI	CTGGAG	1 cut(s)	1064
HaeIII	GGCC	2 cut(s)	939, 1153
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	8 cut(s)	127, 260, 308, 515, 571, 714, 760, 1339
HincII	GTYRAC	3 cut(s)	534, 784, 1091
HindII	GTYRAC	3 cut(s)	534, 784, 1091
HindIII	AAGCTT	1 cut(s)	925
HinfI	GANTC	6 cut(s)	343, 401, 560, 687, 1183, 1241
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	3 cut(s)	164, 379, 539
Hpy166II	GTNNAC	6 cut(s)	502, 534, 784, 993, 1091, 1110
Hpy188I	TCNGA	8 cut(s)	181, 201, 348, 453, 621, 637, 658, 1008
Hpy188III	TCNNGA	6 cut(s)	332, 568, 608, 1016, 1043, 1193
Hpy8I	GTNNAC	6 cut(s)	502, 534, 784, 993, 1091, 1110
HpyAV	CCTTC	2 cut(s)	227, 1190
HpyCH4III	ACNGT	2 cut(s)	997, 1223
HpyCH4IV	ACGT	1 cut(s)	598
HpyF3I	CTNAG	7 cut(s)	286, 330, 744, 893, 1031, 1239, 1262
HpySE526I	ACGT	1 cut(s)	598
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	8 cut(s)	127, 260, 308, 515, 571, 714, 760, 1339
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
Lsp1109I	GCAGC	1 cut(s)	1102
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	2 cut(s)	267, 476
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	2 cut(s)	478, 706
MalI	GATC	7 cut(s)	61, 300, 450, 612, 627, 660, 1005
MboI	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
MboII	GAAGA	6 cut(s)	17, 65, 194, 352, 385, 881
MfeI	CAATTG	1 cut(s)	291
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	2 cut(s)	458, 1112
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	9 cut(s)	241, 291, 419, 518, 553, 751, 941, 1036, 1330
MluNI	TGGCCA	1 cut(s)	939
MlyI	GAGTC	3 cut(s)	569, 681, 1250
MnlI	CCTC	7 cut(s)	104, 363, 793, 873, 914, 969, 1123
Mox20I	TGGCCA	1 cut(s)	939
MroXI	GAANNNNTTC	1 cut(s)	752
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	5 cut(s)	105, 213, 692, 930, 1342
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	939
MspI	CCGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	1139
NcoI	CCATGG	1 cut(s)	304
NdeI	CATATG	3 cut(s)	130, 415, 645
NdeII	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	8 cut(s)	127, 260, 308, 515, 571, 714, 760, 1339
NlaIV	GGNNCC	1 cut(s)	899
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	2 cut(s)	260, 714
PagI	TCATGA	1 cut(s)	567
PciI	ACATGT	2 cut(s)	256, 710
PctI	GAATGC	1 cut(s)	1139
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	3 cut(s)	343, 401, 1183
PflFI	GACNNNGTC	1 cut(s)	1240
PkrI	GCNGC	2 cut(s)	265, 1117
PleI	GAGTC	3 cut(s)	568, 681, 1249
PpsI	GAGTC	3 cut(s)	568, 681, 1249
PpuMI	RGGWCCY	1 cut(s)	1199
PscI	ACATGT	2 cut(s)	256, 710
PshAI	GACNNNNGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	1199
PspFI	CCCAGC	2 cut(s)	1118, 1306
PspN4I	GGNNCC	1 cut(s)	899
PspPI	GGNCC	3 cut(s)	14, 1152, 1199
PspPPI	RGGWCCY	1 cut(s)	1199
PstI	CTGCAG	2 cut(s)	592, 836
PsuI	RGATCY	1 cut(s)	658
PsyI	GACNNNGTC	1 cut(s)	1240
RsaI	GTAC	4 cut(s)	284, 501, 1220, 1260
RsaNI	GTAC	4 cut(s)	283, 500, 1219, 1259
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	458
SalI	GTCGAC	1 cut(s)	1089
SaqAI	TTAA	5 cut(s)	105, 213, 692, 930, 1342
SatI	GCNGC	2 cut(s)	264, 1116
Sau3AI	GATC	7 cut(s)	59, 298, 448, 610, 625, 658, 1003
Sau96I	GGNCC	3 cut(s)	14, 1152, 1199
SbfI	CCTGCAGG	1 cut(s)	592
ScaI	AGTACT	1 cut(s)	1220
SchI	GAGTC	3 cut(s)	569, 681, 1250
SdaI	CCTGCAGG	1 cut(s)	592
SduI	GDGCHC	2 cut(s)	458, 1112
SfaNI	GCATC	1 cut(s)	192
SfcI	CTRYAG	2 cut(s)	588, 832
SinI	GGWCC	2 cut(s)	14, 1199
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
SpeI	ACTAGT	1 cut(s)	475
Sse8387I	CCTGCAGG	1 cut(s)	592
Sse9I	AATT	9 cut(s)	241, 291, 419, 518, 553, 751, 941, 1036, 1330
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	267, 476
SstI	GAGCTC	1 cut(s)	458
StyI	CCWWGG	2 cut(s)	17, 304
TaaI	ACNGT	2 cut(s)	997, 1223
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	1 cut(s)	1090
TasI	AATT	9 cut(s)	241, 291, 419, 518, 553, 751, 941, 1036, 1330
TatI	WGTACW	4 cut(s)	282, 499, 1218, 1258
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	343, 401, 1183
Tru1I	TTAA	5 cut(s)	105, 213, 692, 930, 1342
Tru9I	TTAA	5 cut(s)	105, 213, 692, 930, 1342
TscAI	CASTG	4 cut(s)	16, 1072, 1117, 1165
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	1115
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	5 cut(s)	39, 207, 432, 745, 1324
TspRI	CASTG	4 cut(s)	16, 1072, 1117, 1165
Tth111I	GACNNNGTC	1 cut(s)	1240
VneI	GTGCAC	1 cut(s)	1108
VpaK11BI	GGWCC	2 cut(s)	14, 1199
XagI	CCTNNNNNAGG	1 cut(s)	905
XapI	RAATTY	5 cut(s)	419, 553, 751, 1036, 1330
XceI	RCATGY	2 cut(s)	260, 714
XmiI	GTMKAC	1 cut(s)	1090
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	2 cut(s)	267, 476
ZrmI	AGTACT	1 cut(s)	1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.