Rorug01G0251900

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002130
Physical Location & Seq
Forward (+)
36001997 .. 36002562
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0251900.1

Sequence Viewer

Length: 444 bp
ATGGCCTATTCCATGGGGAGAATGCCTTATATTTGGGGACAAGATGCTGAGGATTTCAGACCTGAAAGATGGCTCAACAATGGAGTTTTCCAGCCTGAATCAACTTTCAAATTTGTCACATTTCATGTCCGCAGGCCCTCAGATCTATCTAGGAAAGGACTTTGCTTACAGACTGTTCATTCAAAAATCGTCTCGGCCACGTGTCACTCGGCCGAGGTCTTCTTGGCTTATACCCGTCCTTCTGGCTTGGTGAGGTGTGCGCAGGCGTGCCAACTCGCGGCCGAGAGGCCGAGCGAGTCAACTTTGGGCCGAGGAAGGATCAATCTCGGCCGCGGGGTTCTCTCTGCCTTGGATGCAAGGACTTTACACGATTCGGCTTTGCTAGCCGGAGTGTTCGTGCTGTGCAACTCGGTGAGTGAATGTGAAAGTGCGAGTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

8.27

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 261
AccII CGCG 2 cut(s) 278, 333
AciI CCGC 4 cut(s) 130, 278, 331, 333
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 4 cut(s) 195, 210, 279, 328
AcsI RAATTY 1 cut(s) 110
AcvI CACGTG 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 200
AgsI TTSAA 2 cut(s) 109, 183
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 326
AoxI GGCC 8 cut(s) 3, 134, 195, 210, 279, 287, 307, 328
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 135, 307
AsuHPI GGTGA 2 cut(s) 262, 424
AsuNHI GCTAGC 1 cut(s) 382
BbrPI CACGTG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 211
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 150, 383
BglII AGATCT 1 cut(s) 142
BisI GCNGC 2 cut(s) 279, 331
BlsI GCNGC 2 cut(s) 280, 332
BmgT120I GGNCC 2 cut(s) 135, 307
BmsI GCATC 2 cut(s) 34, 343
BmtI GCTAGC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 201
BsaJI CCNNGG 5 cut(s) 12, 213, 310, 331, 348
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseDI CCNNGG 5 cut(s) 12, 213, 310, 331, 348
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 39, 153
BseX3I CGGCCG 3 cut(s) 210, 279, 328
Bsh1236I CGCG 2 cut(s) 278, 333
Bsh1285I CGRYCG 3 cut(s) 213, 282, 331
BshFI GGCC 8 cut(s) 5, 136, 197, 212, 281, 289, 309, 330
BsiEI CGRYCG 3 cut(s) 213, 282, 331
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 8 cut(s) 5, 136, 197, 212, 281, 289, 309, 330
Bsp143I GATC 2 cut(s) 142, 318
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 4 cut(s) 130, 278, 331, 333
BspANI GGCC 8 cut(s) 5, 136, 197, 212, 281, 289, 309, 330
BspCNI CTCAG 2 cut(s) 40, 152
BspFNI CGCG 2 cut(s) 278, 333
BspOI GCTAGC 1 cut(s) 386
BspPI GGATC 1 cut(s) 326
BssECI CCNNGG 5 cut(s) 12, 213, 310, 331, 348
BssMI GATC 2 cut(s) 142, 318
BssT1I CCWWGG 2 cut(s) 12, 348
Bst4CI ACNGT 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 201
BstC8I GCNNGC 4 cut(s) 134, 264, 268, 384
BstDEI CTNAG 2 cut(s) 48, 139
BstDSI CCRYGG 2 cut(s) 12, 331
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 2 cut(s) 278, 333
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 2 cut(s) 145, 321
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 142, 318
BstMCI CGRYCG 3 cut(s) 213, 282, 331
BstMWI GCNNNNNNNGC 2 cut(s) 353, 383
BstUI CGCG 2 cut(s) 278, 333
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZI CGGCCG 3 cut(s) 210, 279, 328
BsuRI GGCC 8 cut(s) 5, 136, 197, 212, 281, 289, 309, 330
BtgI CCRYGG 2 cut(s) 12, 331
BtsCI GGATG 1 cut(s) 358
Cac8I GCNNGC 4 cut(s) 134, 264, 268, 384
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 135, 307
Cfr42I CCGCGG 1 cut(s) 334
CviAII CATG 2 cut(s) 13, 125
DdeI CTNAG 2 cut(s) 48, 139
DpnI GATC 2 cut(s) 144, 320
DpnII GATC 2 cut(s) 142, 318
EaeI YGGCCR 4 cut(s) 195, 210, 279, 328
EagI CGGCCG 3 cut(s) 210, 279, 328
EclXI CGGCCG 3 cut(s) 210, 279, 328
Eco130I CCWWGG 2 cut(s) 12, 348
Eco52I CGGCCG 3 cut(s) 210, 279, 328
Eco72I CACGTG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 12, 348
ErhI CCWWGG 2 cut(s) 12, 348
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 2 cut(s) 16, 128
FaiI YATR 4 cut(s) 14, 30, 126, 231
FaqI GGGAC 1 cut(s) 51
FatI CATG 2 cut(s) 12, 124
FauI CCCGC 1 cut(s) 326
Fnu4HI GCNGC 2 cut(s) 279, 331
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 279, 331
FspBI CTAG 2 cut(s) 150, 383
FspI TGCGCA 1 cut(s) 261
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 279, 331
HaeIII GGCC 8 cut(s) 5, 136, 197, 212, 281, 289, 309, 330
HapII CCGG 1 cut(s) 387
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 16, 128
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 3 cut(s) 98, 296, 371
HpaII CCGG 1 cut(s) 387
HphI GGTGA 2 cut(s) 262, 424
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 2 cut(s) 59, 142
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 249, 309
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 356, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 383
HpyF3I CTNAG 2 cut(s) 48, 139
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 2 cut(s) 16, 128
HspAI GCGC 1 cut(s) 260
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 2 cut(s) 142, 318
LpnPI CCDG 7 cut(s) 75, 104, 108, 118, 228, 248, 400
LweI GCATC 2 cut(s) 34, 343
MaeI CTAG 2 cut(s) 150, 383
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 115, 203
MalI GATC 2 cut(s) 144, 320
MboI GATC 2 cut(s) 142, 318
MboII GAAGA 1 cut(s) 211
MflI RGATCY 1 cut(s) 142
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 6 cut(s) 43, 148, 208, 246, 279, 305
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 27
MvnI CGCG 2 cut(s) 278, 333
MwoI GCNNNNNNNGC 2 cut(s) 353, 383
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 142, 318
NheI GCTAGC 1 cut(s) 382
NlaIII CATG 2 cut(s) 16, 128
NmeAIII GCCGAG 7 cut(s) 173, 188, 238, 306, 307, 315, 335
NmuCI GTSAC 2 cut(s) 115, 203
NsbI TGCGCA 1 cut(s) 261
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 98, 371
PkrI GCNGC 2 cut(s) 280, 332
PleI GAGTC 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 201
PmlI CACGTG 1 cut(s) 201
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 201
PspCI CACGTG 1 cut(s) 201
PspPI GGNCC 2 cut(s) 135, 307
PsuI RGATCY 1 cut(s) 142
SacII CCGCGG 1 cut(s) 334
SatI GCNGC 2 cut(s) 279, 331
Sau3AI GATC 2 cut(s) 142, 318
Sau96I GGNCC 2 cut(s) 135, 307
SchI GAGTC 1 cut(s) 305
SetI ASST 4 cut(s) 64, 203, 219, 257
SfaNI GCATC 2 cut(s) 34, 343
Sfr303I CCGCGG 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 334
Sse9I AATT 1 cut(s) 110
SsiI CCGC 4 cut(s) 130, 278, 331, 333
SspMI CTAG 2 cut(s) 150, 383
StyI CCWWGG 2 cut(s) 12, 348
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 203
TasI AATT 1 cut(s) 110
TauI GCSGC 2 cut(s) 281, 333
TfiI GAWTC 2 cut(s) 98, 371
TseFI GTSAC 2 cut(s) 115, 203
Tsp45I GTSAC 2 cut(s) 115, 203
TspDTI ATGAA 2 cut(s) 113, 167
XapI RAATTY 1 cut(s) 110
XspI CTAG 2 cut(s) 150, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.