Rh1AG266700

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002130
Physical Location & Seq
Forward (+)
49330207 .. 49333384
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG266700.1

Sequence Viewer

Length: 564 bp
ATGCAGGTTTGGTATCCATCCCTGGGTGTTGACCCTTTTATGCAGGAGGATTTCTTGCAGAGAATGTCATTTTCAGCCTGCAGAGAGTTTCCATTTATTGAGCCAACACCTCAAGCTCAAACTATATTACCTTGTCTTCTAAGGCACCTTAATCAGGGACAAAAGGGAGGAAGCTTTAAGGTTGGCCAATTATTAGCAGAAAAACCTCATTTCTCTCATTGTATGGAGTGGCTTCTGTTTACTGTATTTGATCGGACATATCCAGACAACGATATTCTTAGAAATTTTCTGGAGTATTTTGATGTGGTTGTCAGTGTTGCAAGAAAAACTGATGGTCGACATTGGGCGGATTTGTGCACTGCCGCTGGGTTCTTTGAGGAATGCTTCCAATGTAGATGGCCCCGCACTGCTGTGTGCTATATACTTGTGATTCCTAATCTTGAAGGTCCTGCTGTCAGTCATCAGTACTGTGCTTTGCGTTTAATACAGGCAATACCGGACAAATGTTTATATCAACTCGCTGGGAAGCTGGTATGTCATTGGAAATTTCATGTCTTAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

187

Amino Acids

21.72

Weight (kDa)

6.64

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIC1 PF07064 46 - 178 3.2e-20 RIC1 C-terminal alpha solenoid region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 337
AciI CCGC 3 cut(s) 347, 363, 403
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 283, 545
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 23, 154
AgsI TTSAA 1 cut(s) 443
AjnI CCWGG 1 cut(s) 21
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 3 cut(s) 116, 174, 529
AluI AGCT 3 cut(s) 116, 174, 529
Alw21I GWGCWC 1 cut(s) 359
Alw44I GTGCAC 1 cut(s) 355
AoxI GGCC 2 cut(s) 184, 398
ApaLI GTGCAC 1 cut(s) 355
ApoI RAATTY 2 cut(s) 283, 545
AspS9I GGNCC 2 cut(s) 399, 446
AvaII GGWCC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 359
BalI TGGCCA 1 cut(s) 186
BanI GGYRCC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 359
BccI CCATC 3 cut(s) 25, 326, 390
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 79
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 399, 446
BmiI GGNNCC 2 cut(s) 146, 401
BmrFI CCNGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 21, 22
BsaWI WCCGGW 1 cut(s) 496
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 154
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 21, 22
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 23, 154
BseSI GKGCMC 1 cut(s) 359
BseYI CCCAGC 2 cut(s) 365, 521
BshFI GGCC 2 cut(s) 186, 400
BshNI GGYRCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 23, 154
BsmFI GGGAC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 2 cut(s) 186, 400
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 3 cut(s) 347, 363, 403
BspANI GGCC 2 cut(s) 186, 400
BspLI GGNNCC 2 cut(s) 146, 401
BspMAI CTGCAG 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 21, 22
BssMI GATC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 244, 470
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 140, 278
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 128
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 186, 400
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 2 cut(s) 357, 405
BtsIMutI CAGTG 3 cut(s) 319, 357, 405
Cac8I GCNNGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 399, 446
Csp6I GTAC 1 cut(s) 466
CviAII CATG 1 cut(s) 551
CviJI RGCY 8 cut(s) 77, 103, 116, 174, 186, 232, 400, 529
CviKI_1 RGCY 8 cut(s) 77, 103, 116, 174, 186, 232, 400, 529
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 2 cut(s) 140, 278
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 184
EciI GGCGGA 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 554
FaiI YATR 9 cut(s) 41, 125, 224, 259, 420, 422, 511, 535, 552
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 550
FauI CCCGC 1 cut(s) 410
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 363
GsaI CCCAGC 2 cut(s) 369, 525
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 2 cut(s) 186, 400
HapII CCGG 1 cut(s) 497
Hin1II CATG 1 cut(s) 554
HincII GTYRAC 2 cut(s) 31, 338
HindII GTYRAC 2 cut(s) 31, 338
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 1 cut(s) 430
HpaII CCGG 1 cut(s) 497
Hpy166II GTNNAC 4 cut(s) 31, 240, 338, 357
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 263, 290, 440
Hpy8I GTNNAC 4 cut(s) 31, 240, 338, 357
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 2 cut(s) 244, 470
HpyCH4V TGCA 6 cut(s) 4, 43, 58, 81, 320, 357
HpyF3I CTNAG 2 cut(s) 140, 278
Hsp92II CATG 1 cut(s) 554
Kzo9I GATC 1 cut(s) 250
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 359
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 4 cut(s) 188, 283, 545, 558
MluNI TGGCCA 1 cut(s) 186
MnlI CCTC 5 cut(s) 40, 120, 161, 216, 370
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 4 cut(s) 150, 177, 482, 557
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 1 cut(s) 23
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 2 cut(s) 146, 401
OliI CACNNNNGTG 1 cut(s) 410
PasI CCCWGGG 1 cut(s) 22
PctI GAATGC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 365, 521
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 146, 401
PspPI GGNCC 2 cut(s) 399, 446
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 1 cut(s) 83
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 410
SalI GTCGAC 1 cut(s) 336
SaqAI TTAA 4 cut(s) 150, 177, 482, 557
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 2 cut(s) 399, 446
ScaI AGTACT 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 359
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 4 cut(s) 188, 283, 545, 558
SsiI CCGC 3 cut(s) 347, 363, 403
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 244, 470
TaqI TCGA 1 cut(s) 337
TasI AATT 4 cut(s) 188, 283, 545, 558
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 4 cut(s) 150, 177, 482, 557
Tru9I TTAA 4 cut(s) 150, 177, 482, 557
TscAI CASTG 3 cut(s) 319, 364, 412
TspDTI ATGAA 1 cut(s) 539
TspRI CASTG 3 cut(s) 319, 364, 412
VneI GTGCAC 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 2 cut(s) 283, 545
XmiI GTMKAC 1 cut(s) 337
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.