AT5G28350

RAB6A-GEF complex partner protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002130
Physical Location & Seq
Forward (+)
10320114 .. 10327374
7261 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28350.1

Sequence Viewer

Length: 3384 bp
ATGTATATGGCTTACGGGTGGCCGCAGGTGATCCCGCTTCTACCTGGATCGTGTCCGTCTTCGCAGCGAGTCGTGTACCTTAAGCTCGCCGGCCGGCTATTGCTGGTAGTTTCTCCGTCTCACCTGGAGCTTTGGGGTTCTTCTCAGCAACGAGTGAGGTTGGGAAAGTATATGAGAGATGACAAGTCTGTGCGAGAAGAAGGAGAGAATTTGCAAGCTGTGTGGAGTCCAGACGCCAAATTGATTGCTGTTCTTACATCATCGTTCTTTCTTCATATATATAAAATTAAGTTTACCGATAAAAGAGTAAAACCCGGAGAGAGACAACCCTCGGAGTTGTGTTTTGCAACCATATCTCTTTTGCTAAGTGAGCAGGTCCCTTTTGCTGGCAAGGACTTGTCTGTGAGCAATTTTGTGAGGGACAGCAAAACTATGCTTTTGGGACTCTCCGATGGATCTTTATATAGTATTTCCTGGAAAGGAGAGTTTGGTGGAGCTTTCAGTATTGGCTCCCACCCTTCTGATAGCAACGATGATAGACTCTTGTCCTACACTCTCGGTAATGGGCTAGTCTCTGGAGTAGCTTCACCAACACTTGCATCTGATGATAAATTCTCTACAAATCCGGCTATTGTTCAGCTGGAACTTTGCACTCGTTCCAAGTTATTGTTTGTGTTAAATTCGGATGGGCAGCTAGTAGTATGCTCTGTGAATAAGAAAGGTTTAAAGTACACGGAGAGTATTAGAGCTGAGAAGAAGGTTGGTGGTGATGCTGTTTGTGCATCAGTGGCTTCAGAGCAACAAATTCTTGCTGTGGGTACAAGAAAAGGGATGGTGGAATTATATGATCTATCACACTCGATCTCTCTCTTGCGAACAGTTTCTTTGCATGATTGGGGTTATTCAGCGGATTACACTGGGCCTGTAAATAACATTGCATGGACGCCTGATAATTCTGCTTTTGCAGTTGGGTGGAAGTCGAGAGGACTTGCAGTTTGGTCTGTTTCTGGATGTAGATTAATGTCAACTGTCCGCCAAATTGGACTGACTTCTACATCTTCCCCTAAAATTAATCCAAAACAAGACTGTAAATACGAACCACTGATGAGTGGTACTTCAGCCATCCAGTGGGATGAATATGGATATAGACTATTTGCTACAGAGGAGGCATCATATGATAGAATTCTTGCATTTTCTTTTGGGAAATGTTGCTTAAATAGAGGAGTTTCAGGAAAAACTTATGTTCGTCAGGTAATGTATGGTGATGATAGACTACTCATGGTTCAGGCGGAGGACACTGACGAGCTTAAGCTTTTACATCTAAAACTTCCAGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGTTTGCTGGTTTACATGGCCTGATTTTGTATGACATTAGGTTTAAGAAGTGGAGGGTATTTGGAGATGTCAGTCAAGAACAACAGATTCATTGCAAGGGTTTGTTATGGTTGGGGAAGATTGTCGTAATCTGTAACTACATTGAAGCTTCTGAGACATATGAGCTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCTTTACTTTGTCGTAAAGTGCTGCTTGGCAAACCAATGGTGATGGATGTTTACCAGGATTATATACTTGTATCTTATCTTCCGTTTTTCATCCACGTCTACCATGTGAAGATATATGGTGAATTGACACCTTCAAGCAAAGCAGATCTGCAGCTTTCCACAGTAAGAGAGTTGTCCATCATGACTGCAAAGAGCCATCCAGCAGCAATGGGATTTGTTCCTGATCAGCACCTGAGAGAAGGCGAATTGGATAATGATAATTTGTCTTCTGATTTGTCGGACAGGGAACCCTCAAGATGTCTTATACTGAGAGGAAATGGGGAGCTTTCACTTCTTGATTTGGTTGATGGACGAGAGAGGGAACTTACAGACTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAGGAGAAGACAAATCTTGTCGAGGAAGTTTCTTGGCTAGATTATGGACACCGAGGAATGCAGGTTTGGTATCCTTCTCTAGGGGATGATCCTTTTATGCAAGAGGATTTCCTGCAGCTGGATCCAGAGTTGGAATTTGATCGCGAGGTGTATCCCTTGGGACTTTTACCAAACGTGGGCGTCGTTGTCGGAGTTTCTCAGAGAATGTCATTTTCGGCAAGCGCAGAGTTTGCGTGTTTTGAGCCTACACCCCAGGCTCAGACTATACTACATTGCCTGCTCCGTCACCTCCTTCAGAGAGATAAAAATGAAGAGGCGTTACTCTTAGCACAATTATCGGCAGAGAAACCCCACTTCTCCCATTGTCTGGAGTGGCTTCTTTTTACTGTTTTTGATGCAGAGATTTCTAGGCCAAATCCAAATAGGAACCAGATTTCAGGACCTGGACATCTTAAAAAGTTATCCCTTTTGAGAAAAGCCTGTGATTTAATAAAAAAATTCCCGGAGTACTATGATGTGGTTGTGAATGTAGCCAGAAAAACCGATGCCCGTCACTGGGCTGATTTATTTTCTGCTGCTGGGATATCAACAACGTTATTTGAGGACTGCTTCCAGCGAAGATGGTATCGAACTGCAGCTTGCTATATCCTTGTGATTGCCAAACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCATTACGGCTATTGCAGGCGACACTTGATGAGTCCCTCTATGATCTTGCTGGAGAGCTAGTGAGGTTCTTACTAAGATCTGGAAGAGACATTGAGCAGGCGCCAACAGAATCAGATTCATTATCGCCTAAGCTTCTCGGTTTCCTTATTTTTGGCTCCAGCCACAAGAAATCATCACTCGATAAGAGCTCCTCGTTCAAAGAGCAAAGTCCTCATGTTGCTTCTGTAAAGAGCATACTTGAAAGTCATGCCAGTTACTTGATGTCTGGTAAAGAACTTTCAAAGCTTGTTGCATTCGTCAAAGGCACCCAGTTTGATATTGTGGATTTTCTTCAACGAGAAAGATATGGTTGTGCGCAGCTGCAGAATTTTGCTGCAGGACTTGAACTGATTGGGCAAAAGCTGCAAATGAGTGAGCTACAGAACCGGTTAGATGCAGAGTTTCTATTGGCTCAAATGTGCTCTGTCAAATTCAAAGAATGGATAGTTGTTCTTGCCACTCTTTTACAACGGTCTGAGGTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGTCTCACTTGGCTTTCGCTCATTACCATGACTTACTTCAGATTTTAGAGGCAAAACTCTCAGCGACCTCACGAGAAGAAAGCAATAGAGGTTCCATCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

1127

Amino Acids

126.77

Weight (kDa)

6.13

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 207 - 345 1.9e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 210 - 395 8.3e-06 CDC20/Fizzy WD40 domain
Beta-prop_RIC1_2nd PF25440 420 - 753 1.5e-84 RIC1 second beta propeller domain
RIC1 PF07064 760 - 935 3.8e-49 RIC1 C-terminal alpha solenoid region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 16
AasI GACNNNNNNGTC 1 cut(s) 3280
Acc16I TGCGCA 1 cut(s) 3057
Acc36I ACCTGC 3 cut(s) 16, 364, 2059
AccB1I GGYRCC 2 cut(s) 2800, 3005
AccB7I CCANNNNNTGG 2 cut(s) 1128, 2374
AccI GTMKAC 1 cut(s) 1698
AccII CGCG 1 cut(s) 2151
AciI CCGC 5 cut(s) 23, 35, 908, 1033, 1289
AclI AACGTT 1 cut(s) 2600
AclWI GGATC 6 cut(s) 25, 55, 463, 2090, 2123, 2136
AcoI YGGCCR 2 cut(s) 20, 91
AcsI RAATTY 9 cut(s) 208, 611, 679, 804, 1182, 2141, 2504, 3067, 3170
AcuI CTGAAG 4 cut(s) 777, 1101, 2285, 3302
AcvI CACGTG 1 cut(s) 1369
AcyI GRCGYC 4 cut(s) 234, 944, 2187, 2801
AfaI GTAC 6 cut(s) 77, 731, 820, 1114, 2516, 2696
AfiI CCNNNNNNNGG 8 cut(s) 386, 1128, 2087, 2125, 2183, 2374, 2562, 2563
AflII CTTAAG 2 cut(s) 80, 1307
AflIII ACRYGT 2 cut(s) 1366, 1994
AgeI ACCGGT 1 cut(s) 3126
AhdI GACNNNNNGTC 1 cut(s) 1998
AjiI CACGTC 1 cut(s) 1696
AjnI CCWGG 6 cut(s) 43, 123, 473, 1653, 2259, 2449
AjuI GAANNNNNNNTTGG 2 cut(s) 2056, 2088
Alw21I GWGCWC 3 cut(s) 1601, 2891, 3164
Alw26I GTCTC 6 cut(s) 123, 316, 577, 1547, 2781, 3288
AlwI GGATC 6 cut(s) 25, 55, 463, 2090, 2123, 2136
AlwNI CAGNNNCTG 2 cut(s) 1831, 2450
AoxI GGCC 6 cut(s) 20, 91, 920, 1355, 1417, 2417
ApoI RAATTY 9 cut(s) 208, 611, 679, 804, 1182, 2141, 2504, 3067, 3170
ArsI GACNNNNNNTTYG 2 cut(s) 978, 1010
AseI ATTAAT 2 cut(s) 1019, 1071
AsiGI ACCGGT 1 cut(s) 3126
Asp700I GAANNNNTTC 1 cut(s) 880
AspLEI GCGC 3 cut(s) 2231, 2803, 3058
AspS9I GGNCC 3 cut(s) 376, 920, 2447
AsuC2I CCSGG 2 cut(s) 315, 2510
AsuNHI GCTAGC 1 cut(s) 1376
AvaII GGWCC 2 cut(s) 376, 2447
BamHI GGATCC 1 cut(s) 2128
BanI GGYRCC 2 cut(s) 2800, 3005
BanII GRGCYC 2 cut(s) 1601, 2891
BarI GAAGNNNNNNTAC 4 cut(s) 1662, 1694, 2310, 2342
BauI CACGAG 1 cut(s) 3351
BbrPI CACGTG 1 cut(s) 1369
BbsI GAAGAC 3 cut(s) 51, 1857, 2021
Bbv12I GWGCWC 3 cut(s) 1601, 2891, 3164
BceAI ACGGC 1 cut(s) 2723
BcgI CGANNNNNNTGC 2 cut(s) 2325, 2359
BciT130I CCWGG 6 cut(s) 45, 125, 475, 1655, 2261, 2451
BciVI GTATCC 2 cut(s) 2088, 2169
BclI TGATCA 2 cut(s) 1591, 1822
BcnI CCSGG 2 cut(s) 315, 2510
BcoDI GTCTC 6 cut(s) 123, 316, 577, 1547, 2781, 3288
BfaI CTAG 8 cut(s) 569, 695, 1377, 2045, 2087, 2415, 2672, 2759
BfmI CTRYAG 7 cut(s) 1158, 1748, 2120, 2640, 3062, 3075, 3119
BfoI RGCGCY 1 cut(s) 2804
BfrI CTTAAG 2 cut(s) 80, 1307
BfuAI ACCTGC 3 cut(s) 16, 364, 2059
BfuI GTATCC 2 cut(s) 2088, 2169
BglII AGATCT 2 cut(s) 1744, 2777
BmcAI AGTACT 2 cut(s) 2516, 2696
Bme1390I CCNGG 8 cut(s) 45, 125, 315, 475, 1655, 2261, 2451, 2510
Bme18I GGWCC 2 cut(s) 376, 2447
BmeRI GACNNNNNGTC 1 cut(s) 1998
BmgBI CACGTC 1 cut(s) 1696
BmgT120I GGNCC 3 cut(s) 376, 920, 2447
BmiI GGNNCC 9 cut(s) 378, 511, 1887, 2130, 2435, 2802, 2857, 3007, 3373
BmrFI CCNGG 8 cut(s) 45, 125, 315, 475, 1655, 2261, 2451, 2510
BmrI ACTGGG 3 cut(s) 927, 2572, 3004
BmsI GCATC 7 cut(s) 608, 760, 791, 1178, 2392, 2542, 3124
BmtI GCTAGC 1 cut(s) 1380
BmuI ACTGGG 3 cut(s) 927, 2572, 3004
BoxI GACNNNNGTC 1 cut(s) 544
BpiI GAAGAC 3 cut(s) 51, 1857, 2021
BpmI CTGGAG 5 cut(s) 146, 597, 2396, 2772, 2842
Bpu10I CCTNAGC 1 cut(s) 2829
BpuEI CTTGAG 1 cut(s) 1876
BpuMI CCSGG 2 cut(s) 315, 2510
BsaAI YACGTR 1 cut(s) 1369
BsaHI GRCGYC 4 cut(s) 234, 944, 2187, 2801
BsaJI CCNNGG 4 cut(s) 330, 2059, 2163, 2259
BsaWI WCCGGW 2 cut(s) 3126, 3237
BsaXI ACNNNNNCTCC 2 cut(s) 2745, 2775
Bsc4I CCNNNNNNNGG 8 cut(s) 386, 1128, 2087, 2125, 2183, 2374, 2562, 2563
Bse118I RCCGGY 3 cut(s) 89, 93, 3126
Bse1I ACTGG 6 cut(s) 922, 1126, 1331, 2567, 2952, 3010
Bse3DI GCAATG 4 cut(s) 933, 1489, 1812, 2278
BseBI CCWGG 6 cut(s) 45, 125, 475, 1655, 2261, 2451
BseDI CCNNGG 4 cut(s) 330, 2059, 2163, 2259
BseLI CCNNNNNNNGG 8 cut(s) 386, 1128, 2087, 2125, 2183, 2374, 2562, 2563
BseMI GCAATG 4 cut(s) 933, 1489, 1812, 2278
BseNI ACTGG 6 cut(s) 922, 1126, 1331, 2567, 2952, 3010
BseRI GAGGAG 4 cut(s) 1178, 1236, 2024, 2881
BseX3I CGGCCG 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 2585
Bsh1236I CGCG 1 cut(s) 2151
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 6 cut(s) 22, 93, 922, 1357, 1419, 2419
BshNI GGYRCC 2 cut(s) 2800, 3005
BshTI ACCGGT 1 cut(s) 3126
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 3 cut(s) 1601, 2891, 3164
BsiSI CCGG 7 cut(s) 90, 94, 315, 626, 2510, 3127, 3238
BslFI GGGAC 5 cut(s) 362, 434, 456, 2181, 2719
BslI CCNNNNNNNGG 8 cut(s) 386, 1128, 2087, 2125, 2183, 2374, 2562, 2563
BsmAI GTCTC 6 cut(s) 123, 316, 577, 1547, 2781, 3288
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 5 cut(s) 362, 434, 456, 2181, 2719
BsmI GAATGC 2 cut(s) 2070, 2993
BsnI GGCC 6 cut(s) 22, 93, 922, 1357, 1419, 2419
Bsp1286I GDGCHC 3 cut(s) 1601, 2891, 3164
Bsp68I TCGCGA 1 cut(s) 2151
BspACI CCGC 5 cut(s) 23, 35, 908, 1033, 1289
BspANI GGCC 6 cut(s) 22, 93, 922, 1357, 1419, 2419
BspFNI CGCG 1 cut(s) 2151
BspHI TCATGA 1 cut(s) 1779
BspLI GGNNCC 9 cut(s) 378, 511, 1887, 2130, 2435, 2802, 2857, 3007, 3373
BspMAI CTGCAG 5 cut(s) 1752, 2124, 2644, 3066, 3079
BspMI ACCTGC 3 cut(s) 16, 364, 2059
BspOI GCTAGC 1 cut(s) 1380
BspPI GGATC 6 cut(s) 25, 55, 463, 2090, 2123, 2136
BspT107I GGYRCC 2 cut(s) 2800, 3005
BspTI CTTAAG 2 cut(s) 80, 1307
BsrDI GCAATG 4 cut(s) 933, 1489, 1812, 2278
BsrFI RCCGGY 3 cut(s) 89, 93, 3126
BsrI ACTGG 6 cut(s) 922, 1126, 1331, 2567, 2952, 3010
BssAI RCCGGY 3 cut(s) 89, 93, 3126
BssECI CCNNGG 4 cut(s) 330, 2059, 2163, 2259
BssNI GRCGYC 4 cut(s) 234, 944, 2187, 2801
BssSI CACGAG 1 cut(s) 3351
BssT1I CCWWGG 1 cut(s) 2163
Bst2BI CACGAG 1 cut(s) 3351
Bst2UI CCWGG 6 cut(s) 45, 125, 475, 1655, 2261, 2451
Bst4CI ACNGT 8 cut(s) 880, 1030, 1088, 1762, 2395, 2699, 3213, 3252
Bst6I CTCTTC 2 cut(s) 2313, 2779
BstACI GRCGYC 4 cut(s) 234, 944, 2187, 2801
BstAFI CTTAAG 2 cut(s) 80, 1307
BstAPI GCANNNNNTGC 2 cut(s) 2237, 3103
BstBAI YACGTR 1 cut(s) 1369
BstENI CCTNNNNNAGG 1 cut(s) 2085
BstFNI CGCG 1 cut(s) 2151
BstH2I RGCGCY 1 cut(s) 2804
BstHHI GCGC 3 cut(s) 2231, 2803, 3058
BstMAI GTCTC 6 cut(s) 123, 316, 577, 1547, 2781, 3288
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 5 cut(s) 370, 779, 788, 2237, 3103
BstNI CCWGG 6 cut(s) 45, 125, 475, 1655, 2261, 2451
BstNSI RCATGY 1 cut(s) 1998
BstPAI GACNNNNGTC 1 cut(s) 544
BstSCI CCNGG 8 cut(s) 43, 123, 313, 473, 1653, 2259, 2449, 2508
BstSFI CTRYAG 7 cut(s) 1158, 1748, 2120, 2640, 3062, 3075, 3119
BstUI CGCG 1 cut(s) 2151
BstV2I GAAGAC 3 cut(s) 51, 1857, 2021
BstX2I RGATCY 4 cut(s) 455, 1744, 2128, 2777
BstYI RGATCY 4 cut(s) 455, 1744, 2128, 2777
BstZI CGGCCG 1 cut(s) 91
BsuI GTATCC 2 cut(s) 2088, 2169
BsuRI GGCC 6 cut(s) 22, 93, 922, 1357, 1419, 2419
BtrI CACGTC 1 cut(s) 1696
BtsIMutI CAGTG 6 cut(s) 792, 915, 1100, 1133, 1296, 2560
BtuMI TCGCGA 1 cut(s) 2151
BveI ACCTGC 3 cut(s) 16, 364, 2059
CaiI CAGNNNCTG 2 cut(s) 1831, 2450
CciI TCATGA 1 cut(s) 1779
CfoI GCGC 3 cut(s) 2231, 2803, 3058
Cfr10I RCCGGY 3 cut(s) 89, 93, 3126
Cfr13I GGNCC 3 cut(s) 376, 920, 2447
CseI GACGC 3 cut(s) 242, 952, 2176
Csp6I GTAC 6 cut(s) 76, 730, 819, 1113, 2515, 2695
CspAI ACCGGT 1 cut(s) 3126
CspCI CAANNNNNGTGG 2 cut(s) 203, 238
CviQI GTAC 6 cut(s) 76, 730, 819, 1113, 2515, 2695
DinI GGCGCC 1 cut(s) 2802
DraI TTTAAA 1 cut(s) 726
DrdI GACNNNNNNGTC 1 cut(s) 3280
DriI GACNNNNNGTC 1 cut(s) 1998
DseDI GACNNNNNNGTC 1 cut(s) 3280
EaeI YGGCCR 2 cut(s) 20, 91
EagI CGGCCG 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 2313, 2779
Eam1105I GACNNNNNGTC 1 cut(s) 1998
EarI CTCTTC 2 cut(s) 2313, 2779
EciI GGCGGA 2 cut(s) 1022, 1304
Ecl136II GAGCTC 2 cut(s) 1599, 2889
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 2163
Eco24I GRGCYC 2 cut(s) 1601, 2891
Eco32I GATATC 2 cut(s) 1583, 2592
Eco47I GGWCC 2 cut(s) 376, 2447
Eco52I CGGCCG 1 cut(s) 91
Eco53kI GAGCTC 2 cut(s) 1599, 2889
Eco57I CTGAAG 4 cut(s) 777, 1101, 2285, 3302
Eco72I CACGTG 1 cut(s) 1369
EcoICRI GAGCTC 2 cut(s) 1599, 2889
EcoNI CCTNNNNNAGG 1 cut(s) 2085
EcoO109I RGGNCCY 2 cut(s) 376, 2447
EcoRI GAATTC 1 cut(s) 1182
EcoRII CCWGG 6 cut(s) 43, 123, 473, 1653, 2259, 2449
EcoRV GATATC 2 cut(s) 1583, 2592
EcoT14I CCWWGG 1 cut(s) 2163
EcoT38I GRGCYC 2 cut(s) 1601, 2891
EgeI GGCGCC 1 cut(s) 2802
EheI GGCGCC 1 cut(s) 2802
ErhI CCWWGG 1 cut(s) 2163
Esp3I CGTCTC 1 cut(s) 123
FalI AAGNNNNNCTT 2 cut(s) 1608, 1640
FaqI GGGAC 5 cut(s) 362, 434, 456, 2181, 2719
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 2 cut(s) 1174, 1558
FbaI TGATCA 2 cut(s) 1591, 1822
FblI GTMKAC 1 cut(s) 1698
FriOI GRGCYC 2 cut(s) 1601, 2891
FspBI CTAG 8 cut(s) 569, 695, 1377, 2045, 2087, 2415, 2672, 2759
FspI TGCGCA 1 cut(s) 3057
GlaI GCGC 3 cut(s) 2230, 2802, 3057
GsaI CCCAGC 1 cut(s) 2589
GsuI CTGGAG 5 cut(s) 146, 597, 2396, 2772, 2842
HaeII RGCGCY 1 cut(s) 2804
HaeIII GGCC 6 cut(s) 22, 93, 922, 1357, 1419, 2419
HapII CCGG 7 cut(s) 90, 94, 315, 626, 2510, 3127, 3238
HgaI GACGC 3 cut(s) 242, 952, 2176
HhaI GCGC 3 cut(s) 2231, 2803, 3058
Hin1I GRCGYC 4 cut(s) 234, 944, 2187, 2801
Hin6I GCGC 3 cut(s) 2229, 2801, 3056
HinP1I GCGC 3 cut(s) 2229, 2801, 3056
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HindIII AAGCTT 4 cut(s) 1310, 1545, 2831, 2984
HpaII CCGG 7 cut(s) 90, 94, 315, 626, 2510, 3127, 3238
Hpy166II GTNNAC 7 cut(s) 76, 294, 732, 1026, 1412, 1651, 1699
Hpy8I GTNNAC 7 cut(s) 76, 294, 732, 1026, 1412, 1651, 1699
Hpy99I CGWCG 1 cut(s) 2192
HpyAV CCTTC 8 cut(s) 194, 528, 751, 1740, 1832, 2091, 2309, 2669
HpyCH4III ACNGT 8 cut(s) 880, 1030, 1088, 1762, 2395, 2699, 3213, 3252
HpyCH4IV ACGT 4 cut(s) 1368, 1695, 2181, 2600
HpyF10VI GCNNNNNNNGC 5 cut(s) 370, 779, 788, 2237, 3103
HpySE526I ACGT 4 cut(s) 1368, 1695, 2181, 2600
Hsp92I GRCGYC 4 cut(s) 234, 944, 2187, 2801
HspAI GCGC 3 cut(s) 2229, 2801, 3056
KasI GGCGCC 1 cut(s) 2800
KroI GCCGGC 2 cut(s) 89, 93
KroNI GCCGGC 2 cut(s) 91, 95
Ksp22I TGATCA 2 cut(s) 1591, 1822
LmnI GCTCC 7 cut(s) 127, 494, 515, 1921, 2292, 2861, 2894
LweI GCATC 7 cut(s) 608, 760, 791, 1178, 2392, 2542, 3124
MaeI CTAG 8 cut(s) 569, 695, 1377, 2045, 2087, 2415, 2672, 2759
MaeII ACGT 4 cut(s) 1368, 1695, 2181, 2600
MaeIII GTNAC 7 cut(s) 1532, 1990, 2291, 2325, 2558, 2954, 3271
MflI RGATCY 4 cut(s) 455, 1744, 2128, 2777
MhlI GDGCHC 3 cut(s) 1601, 2891, 3164
Mly113I GGCGCC 1 cut(s) 2801
MlyI GAGTC 7 cut(s) 78, 235, 438, 534, 1964, 2741, 3290
MmeI TCCRAC 3 cut(s) 1857, 2118, 2176
MroNI GCCGGC 2 cut(s) 89, 93
MroXI GAANNNNTTC 1 cut(s) 880
MslI CAYNNNNRTG 1 cut(s) 3306
MspA1I CMGCKG 4 cut(s) 640, 908, 2125, 3061
MspCI CTTAAG 2 cut(s) 80, 1307
MspI CCGG 7 cut(s) 90, 94, 315, 626, 2510, 3127, 3238
MspR9I CCNGG 8 cut(s) 45, 125, 315, 475, 1655, 2261, 2451, 2510
Mva1269I GAATGC 2 cut(s) 2070, 2993
MvaI CCWGG 6 cut(s) 45, 125, 475, 1655, 2261, 2451
MvnI CGCG 1 cut(s) 2151
MwoI GCNNNNNNNGC 5 cut(s) 370, 779, 788, 2237, 3103
NaeI GCCGGC 2 cut(s) 91, 95
NarI GGCGCC 1 cut(s) 2801
NciI CCSGG 2 cut(s) 315, 2510
NdeI CATATG 2 cut(s) 1174, 1558
NgoMIV GCCGGC 2 cut(s) 89, 93
NheI GCTAGC 1 cut(s) 1376
NlaIV GGNNCC 9 cut(s) 378, 511, 1887, 2130, 2435, 2802, 2857, 3007, 3373
NmuCI GTSAC 4 cut(s) 1990, 2291, 2558, 3271
NruI TCGCGA 1 cut(s) 2151
NsbI TGCGCA 1 cut(s) 3057
NspI RCATGY 1 cut(s) 1998
PagI TCATGA 1 cut(s) 1779
PaqCI CACCTGC 1 cut(s) 16
PciI ACATGT 1 cut(s) 1994
PcsI WCGNNNNNNNCGW 1 cut(s) 2187
PctI GAATGC 2 cut(s) 2070, 2993
PdiI GCCGGC 2 cut(s) 91, 95
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 3 cut(s) 1486, 2810, 2816
PflMI CCANNNNNTGG 2 cut(s) 1128, 2374
PfoI TCCNGGA 2 cut(s) 473, 2508
PinAI ACCGGT 1 cut(s) 3126
PleI GAGTC 7 cut(s) 77, 234, 438, 534, 1964, 2740, 3289
PluTI GGCGCC 1 cut(s) 2804
PmaCI CACGTG 1 cut(s) 1369
PmlI CACGTG 1 cut(s) 1369
PpsI GAGTC 7 cut(s) 77, 234, 438, 534, 1964, 2740, 3289
Ppu21I YACGTR 1 cut(s) 1369
PpuMI RGGWCCY 2 cut(s) 376, 2447
PscI ACATGT 1 cut(s) 1994
PshAI GACNNNNGTC 1 cut(s) 544
PshBI ATTAAT 2 cut(s) 1019, 1071
Psp124BI GAGCTC 2 cut(s) 1601, 2891
Psp1406I AACGTT 1 cut(s) 2600
Psp5II RGGWCCY 2 cut(s) 376, 2447
Psp6I CCWGG 6 cut(s) 43, 123, 473, 1653, 2259, 2449
PspCI CACGTG 1 cut(s) 1369
PspFI CCCAGC 1 cut(s) 2585
PspGI CCWGG 6 cut(s) 43, 123, 473, 1653, 2259, 2449
PspN4I GGNNCC 9 cut(s) 378, 511, 1887, 2130, 2435, 2802, 2857, 3007, 3373
PspPI GGNCC 3 cut(s) 376, 920, 2447
PspPPI RGGWCCY 2 cut(s) 376, 2447
PstI CTGCAG 5 cut(s) 1752, 2124, 2644, 3066, 3079
PstNI CAGNNNCTG 2 cut(s) 1831, 2450
PsuI RGATCY 4 cut(s) 455, 1744, 2128, 2777
PvuII CAGCTG 3 cut(s) 640, 2125, 3061
RruI TCGCGA 1 cut(s) 2151
RsaI GTAC 6 cut(s) 77, 731, 820, 1114, 2516, 2696
RsaNI GTAC 6 cut(s) 76, 730, 819, 1113, 2515, 2695
RseI CAYNNNNRTG 1 cut(s) 3306
SacI GAGCTC 2 cut(s) 1601, 2891
Sau96I GGNCC 3 cut(s) 376, 920, 2447
ScaI AGTACT 2 cut(s) 2516, 2696
SchI GAGTC 7 cut(s) 78, 235, 438, 534, 1964, 2741, 3290
ScrFI CCNGG 8 cut(s) 45, 125, 315, 475, 1655, 2261, 2451, 2510
SduI GDGCHC 3 cut(s) 1601, 2891, 3164
SfaNI GCATC 7 cut(s) 608, 760, 791, 1178, 2392, 2542, 3124
SfcI CTRYAG 7 cut(s) 1158, 1748, 2120, 2640, 3062, 3075, 3119
SfoI GGCGCC 1 cut(s) 2802
SinI GGWCC 2 cut(s) 376, 2447
SmiMI CAYNNNNRTG 1 cut(s) 3306
SmlI CTYRAG 3 cut(s) 80, 1307, 1891
SmoI CTYRAG 3 cut(s) 80, 1307, 1891
SsiI CCGC 5 cut(s) 23, 35, 908, 1033, 1289
SspDI GGCGCC 1 cut(s) 2800
SspMI CTAG 8 cut(s) 569, 695, 1377, 2045, 2087, 2415, 2672, 2759
SstI GAGCTC 2 cut(s) 1601, 2891
StyD4I CCNGG 8 cut(s) 43, 123, 313, 473, 1653, 2259, 2449, 2508
StyI CCWWGG 1 cut(s) 2163
TaaI ACNGT 8 cut(s) 880, 1030, 1088, 1762, 2395, 2699, 3213, 3252
TaiI ACGT 4 cut(s) 1371, 1698, 2184, 2603
TaqI TCGA 5 cut(s) 860, 980, 2028, 2635, 2880
TatI WGTACW 3 cut(s) 729, 2514, 2694
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 3 cut(s) 1486, 2810, 2816
TscAI CASTG 6 cut(s) 792, 922, 1107, 1133, 1303, 2567
TseFI GTSAC 4 cut(s) 1990, 2291, 2558, 3271
Tsp45I GTSAC 4 cut(s) 1990, 2291, 2558, 3271
TspDTI ATGAA 6 cut(s) 263, 1149, 1478, 1678, 2331, 2808
TspGWI ACGGA 5 cut(s) 45, 105, 749, 1671, 2279
TspRI CASTG 6 cut(s) 792, 922, 1107, 1133, 1303, 2567
Van91I CCANNNNNTGG 2 cut(s) 1128, 2374
Vha464I CTTAAG 2 cut(s) 80, 1307
VpaK11BI GGWCC 2 cut(s) 376, 2447
VspI ATTAAT 2 cut(s) 1019, 1071
XagI CCTNNNNNAGG 1 cut(s) 2085
XapI RAATTY 9 cut(s) 208, 611, 679, 804, 1182, 2141, 2504, 3067, 3170
XceI RCATGY 1 cut(s) 1998
XmiI GTMKAC 1 cut(s) 1698
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 8 cut(s) 569, 695, 1377, 2045, 2087, 2415, 2672, 2759
ZrmI AGTACT 2 cut(s) 2516, 2696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.