Rorug01G0252000

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002130
Physical Location & Seq
Forward (+)
36004762 .. 36088445
83684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0252000.1

Sequence Viewer

Length: 1554 bp
ATGGGGTTCCTCTACTTCATCTGCACCTTCATATTTTCAGTACTCTCTCTTTTCCTAACCTTCTTCTCTTTCCTCACACTCAGAATCCTCACAGGCAAATCCATCGGAGACCCAAACTATGCACCAGTGAAAGGCACAGTCTTTCACCAGCTCTACTACTACAAAAAACTCTATGACTACCAAACCCGAGTGGCCAGAGGAACCCCAACTCACCGGATTCTGGCCCCGGACCTGAGTTTCATATACACAACCGACTCAAGAAACATCGAACATGTTGTCAAAACCAACTTTGCACATTATTCAAAAGGCGTGATCAGTCAGGAAAACATGTGTGATGTTTTTGGGCAAGGGATATTTAATGTTGATGGAGAAAAGTGGAAACACCAGAGGAAGCTTGCAAGCTATGAGTTCTCAACCAGGGTTCTTAGAGATTTCAGCTGTTCTGTGTTTAGAAGAAGTGCTGCAAAATTGGTGAAAATTATTTTTGAGTTTTCGGATTCAAACGGGATTTTTGATATGCAGGACTTGCTTATGAGGTGTACCATGGATTCCATATTCAAAGTTGGGTTTGGAGTTGAACTAAATTGCTTGGAAGGGTCAAGCAAAGAAGGGATAGAATTCATGAAGGCCTTTGATGAGTCGACTGCTCTAACCTCTTGGCGCTTTGTTGATCCCCTCTGGAAATTGAAAAGATTTCTCAACATTGGTTCTGAGGCCACCCTTAAAAAGTATGTCAAAGTCATACGTGATTTTGTGCACCAACTTATCAAGAGCAAGAGGGAATTGCTAGCTGGCCAGAAACATGGTGATGACAAGGAGGACATTGTCTCACGGTTTCTGTTGGAGAGTGAAAAGAATCCAGAGGAGATGAAAGATAAATATCTAAGTGATATAATTCTGAATTTTATGATTGCTGGGAAAGATACAAGTGCAAATACACTCTCATGGTTCTTCTACATGCTCAGCAAGAACCCTCTAATACAGGAAAAAGCTTCACAAGAAGTTAGGGATGTTGTCGGTCTGAATCATGAAGCTAATGTCGATGAATTTGTGGCCAGTATAACTGATGCAACTCTTGAACAAATGCATTATCTTCATGCAACACTAACAGAGACCTTGAGGCTATACCCAGCAGTTCCTGTGGATGGGAGGTGTGCAGAGATAGATGACATTCTTCCTGATGGCTTTAGAGTCAAAAAAGGAGATGGAGTAAACTATATGACCTATGCCATGGGCAGGATGCCTTATATATGGGGAAAAGATGCGGAGGATTTCCGACCTGAAAGATGGCTCAAGGATGGAATTTTCCAGCCTGAATCGCCTTTCAAATTTGTCGCTTTTCATGCTGGTCCTCGGATCTGTCTAGGGAAGGACTTTGCCTACCGGCAGATGAAGATATTAGCAATGGCTCTTCTTTTCTTCTTCCACTTCAAATTGGCCGATGAAGCAAGAGAAGTAAACTACAGGACCATGTTCACCCTTCACATTGATGGCAGTCTCCCCATGCTTGCAGTTCGAAGGACAATGGACTCATATATACAAGTAAATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

517

Amino Acids

59.86

Weight (kDa)

8.26

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 73 - 493 5.8e-74 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 641
AciI CCGC 1 cut(s) 1265
AclWI GGATC 2 cut(s) 665, 1364
AcoI YGGCCR 4 cut(s) 192, 793, 1053, 1437
AcsI RAATTY 5 cut(s) 617, 901, 1046, 1302, 1328
AfaI GTAC 2 cut(s) 42, 541
AfiI CCNNNNNNNGG 4 cut(s) 131, 220, 1145, 1236
AflIII ACRYGT 2 cut(s) 271, 327
AgsI TTSAA 8 cut(s) 303, 501, 559, 578, 688, 1079, 1327, 1432
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 7 cut(s) 151, 394, 402, 438, 791, 992, 1034
AluI AGCT 7 cut(s) 151, 394, 402, 438, 791, 992, 1034
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 4 cut(s) 102, 832, 1106, 1502
Alw44I GTGCAC 1 cut(s) 755
AlwI GGATC 2 cut(s) 665, 1364
AlwNI CAGNNNCTG 1 cut(s) 1139
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 7 cut(s) 192, 222, 627, 714, 793, 1053, 1437
ApaLI GTGCAC 1 cut(s) 755
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 5 cut(s) 617, 901, 1046, 1302, 1328
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AspLEI GCGC 1 cut(s) 663
AspS9I GGNCC 4 cut(s) 223, 229, 1349, 1467
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 5 cut(s) 137, 203, 484, 818, 1468
AsuII TTCGAA 1 cut(s) 1516
AsuNHI GCTAGC 1 cut(s) 787
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 3 cut(s) 229, 1349, 1467
BaeGI GKGCMC 1 cut(s) 759
BalI TGGCCA 3 cut(s) 194, 795, 1055
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 1 cut(s) 448
BccI CCATC 8 cut(s) 110, 359, 1139, 1175, 1199, 1281, 1292, 1484
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 1 cut(s) 418
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 4 cut(s) 102, 832, 1106, 1502
BfaI CTAG 2 cut(s) 788, 1364
BfmI CTRYAG 1 cut(s) 1462
BfoI RGCGCY 1 cut(s) 664
BisI GCNGC 1 cut(s) 462
BlpI GCTNAGC 1 cut(s) 962
BlsI GCNGC 1 cut(s) 463
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 227, 418
Bme18I GGWCC 3 cut(s) 229, 1349, 1467
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 4 cut(s) 223, 229, 1349, 1467
BmiI GGNNCC 3 cut(s) 8, 202, 225
BmrFI CCNGG 2 cut(s) 227, 418
BmsI GCATC 3 cut(s) 1057, 1230, 1252
BmtI GCTAGC 1 cut(s) 791
Bpu1102I GCTNAGC 1 cut(s) 962
Bpu14I TTCGAA 1 cut(s) 1516
BpuEI CTTGAG 3 cut(s) 241, 1138, 1277
BpuMI CCSGG 1 cut(s) 227
Bsa29I ATCGAT 1 cut(s) 1549
BsaAI YACGTR 1 cut(s) 746
BsaBI GATNNNNATC 1 cut(s) 879
BsaI GGTCTC 2 cut(s) 102, 1106
BsaJI CCNNGG 5 cut(s) 225, 417, 543, 1230, 1352
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 1194, 1224
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 220, 1145, 1236
Bse118I RCCGGY 1 cut(s) 1383
Bse1I ACTGG 2 cut(s) 125, 1056
Bse3DI GCAATG 1 cut(s) 1410
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 1 cut(s) 418
BseCI ATCGAT 1 cut(s) 1549
BseDI CCNNGG 5 cut(s) 225, 417, 543, 1230, 1352
BseGI GGATG 4 cut(s) 1015, 1150, 1245, 1303
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 4 cut(s) 131, 220, 1145, 1236
BseMI GCAATG 1 cut(s) 1410
BseMII CTCAG 4 cut(s) 94, 224, 702, 976
BseNI ACTGG 2 cut(s) 125, 1056
BseRI GAGGAG 1 cut(s) 878
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 1 cut(s) 448
BseYI CCCAGC 2 cut(s) 914, 1129
BsgI GTGCAG 2 cut(s) 7, 1176
BshFI GGCC 7 cut(s) 194, 224, 629, 716, 795, 1055, 1439
BshVI ATCGAT 1 cut(s) 1549
BsiHKAI GWGCWC 1 cut(s) 759
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 214, 227, 1384
BslI CCNNNNNNNGG 4 cut(s) 131, 220, 1145, 1236
BsmAI GTCTC 4 cut(s) 102, 832, 1106, 1502
BsnI GGCC 7 cut(s) 194, 224, 629, 716, 795, 1055, 1439
Bso31I GGTCTC 2 cut(s) 102, 1106
BsoBI CYCGRG 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 1516
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 3 cut(s) 312, 670, 1356
Bsp1720I GCTNAGC 1 cut(s) 962
Bsp19I CCATGG 2 cut(s) 543, 1230
BspACI CCGC 1 cut(s) 1265
BspANI GGCC 7 cut(s) 194, 224, 629, 716, 795, 1055, 1439
BspCNI CTCAG 4 cut(s) 93, 225, 703, 975
BspDI ATCGAT 1 cut(s) 1549
BspHI TCATGA 2 cut(s) 621, 1027
BspLI GGNNCC 3 cut(s) 8, 202, 225
BspOI GCTAGC 1 cut(s) 791
BspPI GGATC 2 cut(s) 665, 1364
BspQI GCTCTTC 1 cut(s) 1416
BspT104I TTCGAA 1 cut(s) 1516
BspTNI GGTCTC 2 cut(s) 102, 1106
BsrDI GCAATG 1 cut(s) 1410
BsrFI RCCGGY 1 cut(s) 1383
BsrI ACTGG 2 cut(s) 125, 1056
BssAI RCCGGY 1 cut(s) 1383
BssECI CCNNGG 5 cut(s) 225, 417, 543, 1230, 1352
BssMI GATC 3 cut(s) 312, 670, 1356
BssT1I CCWWGG 2 cut(s) 543, 1230
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 2 cut(s) 139, 834
Bst6I CTCTTC 1 cut(s) 1416
BstAPI GCANNNNNTGC 1 cut(s) 526
BstBAI YACGTR 1 cut(s) 746
BstBI TTCGAA 1 cut(s) 1516
BstC8I GCNNGC 5 cut(s) 396, 400, 789, 793, 1509
BstDEI CTNAG 6 cut(s) 80, 233, 425, 711, 884, 962
BstDSI CCRYGG 2 cut(s) 543, 1230
BstF5I GGATG 4 cut(s) 1015, 1150, 1245, 1303
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 3 cut(s) 315, 673, 1359
BstMAI GTCTC 4 cut(s) 102, 832, 1106, 1502
BstMBI GATC 3 cut(s) 312, 670, 1356
BstMWI GCNNNNNNNGC 4 cut(s) 526, 1318, 1343, 1445
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 3 cut(s) 275, 331, 961
BstSCI CCNGG 2 cut(s) 225, 416
BstSFI CTRYAG 1 cut(s) 1462
BstSLI GKGCMC 1 cut(s) 759
BstV1I GCAGC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 1356
BstXI CCANNNNNNTGG 1 cut(s) 803
BstYI RGATCY 1 cut(s) 1356
Bsu15I ATCGAT 1 cut(s) 1549
BsuRI GGCC 7 cut(s) 194, 224, 629, 716, 795, 1055, 1439
BsuTUI ATCGAT 1 cut(s) 1549
BtgI CCRYGG 2 cut(s) 543, 1230
BtsCI GGATG 4 cut(s) 1015, 1150, 1245, 1303
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 5 cut(s) 396, 400, 789, 793, 1509
CaiI CAGNNNCTG 1 cut(s) 1139
CciI TCATGA 2 cut(s) 621, 1027
CfoI GCGC 1 cut(s) 663
Cfr10I RCCGGY 1 cut(s) 1383
Cfr13I GGNCC 4 cut(s) 223, 229, 1349, 1467
ClaI ATCGAT 1 cut(s) 1549
Csp6I GTAC 2 cut(s) 41, 540
CviQI GTAC 2 cut(s) 41, 540
DdeI CTNAG 6 cut(s) 80, 233, 425, 711, 884, 962
DpnI GATC 3 cut(s) 314, 672, 1358
DpnII GATC 3 cut(s) 312, 670, 1356
EaeI YGGCCR 4 cut(s) 192, 793, 1053, 1437
Eam1104I CTCTTC 1 cut(s) 1416
EarI CTCTTC 1 cut(s) 1416
Eco130I CCWWGG 2 cut(s) 543, 1230
Eco147I AGGCCT 1 cut(s) 629
Eco31I GGTCTC 2 cut(s) 102, 1106
Eco47I GGWCC 3 cut(s) 229, 1349, 1467
Eco88I CYCGRG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 543, 1230
EcoT22I ATGCAT 1 cut(s) 1089
ErhI CCWWGG 2 cut(s) 543, 1230
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 641
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 4 cut(s) 1022, 1157, 1252, 1310
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 2 cut(s) 788, 1364
GlaI GCGC 1 cut(s) 662
GluI GCNGC 1 cut(s) 462
GsaI CCCAGC 2 cut(s) 918, 1133
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 7 cut(s) 194, 224, 629, 716, 795, 1055, 1439
HapII CCGG 3 cut(s) 214, 227, 1384
HhaI GCGC 1 cut(s) 663
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 2 cut(s) 392, 990
HpaII CCGG 3 cut(s) 214, 227, 1384
HphI GGTGA 5 cut(s) 137, 203, 484, 818, 1468
Hpy166II GTNNAC 6 cut(s) 540, 642, 757, 1213, 1459, 1476
Hpy188I TCNGA 8 cut(s) 83, 107, 496, 712, 900, 1023, 1277, 1356
Hpy188III TCNNGA 9 cut(s) 258, 320, 622, 679, 769, 860, 1028, 1076, 1178
Hpy8I GTNNAC 6 cut(s) 540, 642, 757, 1213, 1459, 1476
HpyAV CCTTC 8 cut(s) 37, 70, 587, 602, 619, 1363, 1490, 1512
HpyCH4III ACNGT 2 cut(s) 139, 834
HpyCH4IV ACGT 1 cut(s) 745
HpyF10VI GCNNNNNNNGC 4 cut(s) 526, 1318, 1343, 1445
HpyF3I CTNAG 6 cut(s) 80, 233, 425, 711, 884, 962
HpySE526I ACGT 1 cut(s) 745
HspAI GCGC 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 3 cut(s) 312, 670, 1356
LguI GCTCTTC 1 cut(s) 1416
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 3 cut(s) 1057, 1230, 1252
MaeI CTAG 2 cut(s) 788, 1364
MaeII ACGT 1 cut(s) 745
MalI GATC 3 cut(s) 314, 672, 1358
MboI GATC 3 cut(s) 312, 670, 1356
MboII GAAGA 9 cut(s) 55, 465, 943, 1085, 1166, 1403, 1405, 1411, 1414
MflI RGATCY 1 cut(s) 1356
MhlI GDGCHC 1 cut(s) 759
MlsI TGGCCA 3 cut(s) 194, 795, 1055
MluNI TGGCCA 3 cut(s) 194, 795, 1055
MlyI GAGTC 4 cut(s) 248, 647, 1200, 1523
MmeI TCCRAC 2 cut(s) 822, 1300
Mox20I TGGCCA 3 cut(s) 194, 795, 1055
Mph1103I ATGCAT 1 cut(s) 1089
MscI TGGCCA 3 cut(s) 194, 795, 1055
MseI TTAA 2 cut(s) 357, 723
MslI CAYNNNNRTG 3 cut(s) 807, 943, 1488
Msp20I TGGCCA 3 cut(s) 194, 795, 1055
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 3 cut(s) 214, 227, 1384
MspR9I CCNGG 2 cut(s) 227, 418
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 4 cut(s) 526, 1318, 1343, 1445
NciI CCSGG 1 cut(s) 227
NcoI CCATGG 2 cut(s) 543, 1230
NdeII GATC 3 cut(s) 312, 670, 1356
NheI GCTAGC 1 cut(s) 787
NlaIV GGNNCC 3 cut(s) 8, 202, 225
NsiI ATGCAT 1 cut(s) 1089
NspI RCATGY 3 cut(s) 275, 331, 961
NspV TTCGAA 1 cut(s) 1516
PagI TCATGA 2 cut(s) 621, 1027
PceI AGGCCT 1 cut(s) 629
PciI ACATGT 2 cut(s) 271, 327
PciSI GCTCTTC 1 cut(s) 1416
PfeI GAWTC 7 cut(s) 84, 217, 497, 548, 856, 1024, 1316
PflFI GACNNNGTC 1 cut(s) 824
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 4 cut(s) 248, 646, 1199, 1523
PpsI GAGTC 4 cut(s) 248, 646, 1199, 1523
Ppu21I YACGTR 1 cut(s) 746
PscI ACATGT 2 cut(s) 271, 327
Psp6I CCWGG 1 cut(s) 416
PspFI CCCAGC 2 cut(s) 914, 1129
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 3 cut(s) 8, 202, 225
PspPI GGNCC 4 cut(s) 223, 229, 1349, 1467
PstNI CAGNNNCTG 1 cut(s) 1139
PsuI RGATCY 1 cut(s) 1356
PsyI GACNNNGTC 1 cut(s) 824
PvuII CAGCTG 1 cut(s) 438
RsaI GTAC 2 cut(s) 42, 541
RsaNI GTAC 2 cut(s) 41, 540
RseI CAYNNNNRTG 3 cut(s) 807, 943, 1488
SalI GTCGAC 1 cut(s) 640
SapI GCTCTTC 1 cut(s) 1416
SaqAI TTAA 2 cut(s) 357, 723
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 3 cut(s) 312, 670, 1356
Sau96I GGNCC 4 cut(s) 223, 229, 1349, 1467
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 4 cut(s) 248, 647, 1200, 1523
ScrFI CCNGG 2 cut(s) 227, 418
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 3 cut(s) 1057, 1230, 1252
SfcI CTRYAG 1 cut(s) 1462
SfuI TTCGAA 1 cut(s) 1516
SinI GGWCC 3 cut(s) 229, 1349, 1467
SmiMI CAYNNNNRTG 3 cut(s) 807, 943, 1488
SmlI CTYRAG 3 cut(s) 256, 1117, 1292
SmoI CTYRAG 3 cut(s) 256, 1117, 1292
SseBI AGGCCT 1 cut(s) 629
SsiI CCGC 1 cut(s) 1265
SspMI CTAG 2 cut(s) 788, 1364
StuI AGGCCT 1 cut(s) 629
StyD4I CCNGG 2 cut(s) 225, 416
StyI CCWWGG 2 cut(s) 543, 1230
TaaI ACNGT 2 cut(s) 139, 834
TaiI ACGT 1 cut(s) 748
TaqI TCGA 5 cut(s) 267, 641, 1041, 1516, 1549
TaqII GACCGA 1 cut(s) 1007
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 7 cut(s) 84, 217, 497, 548, 856, 1024, 1316
Tru1I TTAA 2 cut(s) 357, 723
Tru9I TTAA 2 cut(s) 357, 723
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 461
TspRI CASTG 1 cut(s) 132
Tth111I GACNNNGTC 1 cut(s) 824
VneI GTGCAC 1 cut(s) 755
VpaK11BI GGWCC 3 cut(s) 229, 1349, 1467
XapI RAATTY 5 cut(s) 617, 901, 1046, 1302, 1328
XceI RCATGY 3 cut(s) 275, 331, 961
XmiI GTMKAC 1 cut(s) 641
XspI CTAG 2 cut(s) 788, 1364
ZrmI AGTACT 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.