RchiOBHm_Chr1g0356891

Protein RIC1 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
49312476 .. 49313881
1406 bp
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UTR
Exon/CDS
Intron
PRQ58220

Sequence Viewer

Length: 144 bp
ATGGAAGACACTGGACCTGTCAGTTGCATTGCATGGACATCTGATAATTCTGCTTTTGCAGTCGGGTGGAAGTTAAGAGGACTTACATTTTGGTCTATCTCTGGTTGTCGTTTGATTTCAATAATCCTTCAAATAGTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

47

Amino Acids

5.1

Weight (kDa)

5.87

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 120, 131
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspS9I GGNCC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 14
CviAII CATG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 14
FaeI CATG 1 cut(s) 36
FaiI YATR 1 cut(s) 34
FatI CATG 1 cut(s) 32
Hin1II CATG 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 27, 32, 59
Hsp92II CATG 1 cut(s) 36
LpnPI CCDG 2 cut(s) 30, 87
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 46
MnlI CCTC 1 cut(s) 71
MseI TTAA 1 cut(s) 74
NlaIII CATG 1 cut(s) 36
PspPI GGNCC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 14
SetI ASST 1 cut(s) 19
SgeI CNNG 5 cut(s) 24, 29, 45, 76, 114
SinI GGWCC 1 cut(s) 14
Sse9I AATT 1 cut(s) 46
TasI AATT 1 cut(s) 46
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 16
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.