Rroxscaffold_4G00299210

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002130
Physical Location & Seq
Reverse (-)
19138543 .. 19145022
6480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299210.1

Sequence Viewer

Length: 465 bp
ATGGAAGACACTGGACCTGTCAATTGCATTGCATGGACGCCTGATAATTCTGCTTTTGCAGTCGGGAGGAAGTTAAGAGGACTTACAGTTTGGTCTATCTCTGGTTGTCGTTTGATTTCAACAATCCGTCAAATAGGTTTGAGTTCAGTATCTTCTCTGGTGGTTAAGCCAGTCAACGAATGTAAATATGAACCTTTGATGGGTGGCACCTCATTGATGCAGTGGGATGAATATGGATACAGGCTCTATGCTATTGAAGAACGATCGTTGGAGAGTATTCTTGGATTTTTCTTTGGTAAATGTTGCCTTAACAGAGGAGTTTCAGGCATGACATGCGTCCGGCAAGTGATATATGGTGATGATCGGTTGCTTGTTGTTTTGTCTGAAGATACTGATGAACTTAAGATGCTACATCTTAGCCTTCCAGTTTCTTATATCTCGCAAAATTGGTCAGTCAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

154

Amino Acids

17.23

Weight (kDa)

5.4

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 200
AflII CTTAAG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 2 cut(s) 120, 257
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 193
BciVI GTATCC 1 cut(s) 230
BfrI CTTAAG 1 cut(s) 401
BfuI GTATCC 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 208
BmsI GCATC 2 cut(s) 207, 396
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 16, 170, 425
Bse3DI GCAATG 1 cut(s) 27
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 3 cut(s) 16, 170, 425
BseRI GAGGAG 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 200
Bsp143I GATC 2 cut(s) 263, 361
BspLI GGNNCC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 206
BspTI CTTAAG 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 3 cut(s) 16, 170, 425
BssMI GATC 2 cut(s) 263, 361
BssNI GRCGYC 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 266, 364
BstMBI GATC 2 cut(s) 263, 361
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNSI RCATGY 2 cut(s) 336, 463
BstPAI GACNNNNGTC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 9, 227
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 2 cut(s) 46, 325
CviAII CATG 4 cut(s) 33, 328, 333, 460
CviJI RGCY 3 cut(s) 169, 244, 420
CviKI_1 RGCY 3 cut(s) 169, 244, 420
DdeI CTNAG 1 cut(s) 416
DpnI GATC 2 cut(s) 265, 363
DpnII GATC 2 cut(s) 263, 361
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 405
FaeI CATG 4 cut(s) 36, 331, 336, 463
FatI CATG 4 cut(s) 32, 327, 332, 459
FokI GGATG 1 cut(s) 239
HapII CCGG 1 cut(s) 340
HgaI GACGC 2 cut(s) 46, 325
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 4 cut(s) 36, 331, 336, 463
HincII GTYRAC 2 cut(s) 175, 457
HindII GTYRAC 2 cut(s) 175, 457
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 175, 457
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 175, 457
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 4 cut(s) 27, 32, 59, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 416
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 4 cut(s) 36, 331, 336, 463
Kzo9I GATC 2 cut(s) 263, 361
LpnPI CCDG 9 cut(s) 30, 54, 87, 143, 183, 226, 309, 353, 438
LweI GCATC 2 cut(s) 207, 396
MalI GATC 2 cut(s) 265, 363
MboI GATC 2 cut(s) 263, 361
MboII GAAGA 4 cut(s) 17, 144, 269, 398
MfeI CAATTG 1 cut(s) 22
MluCI AATT 3 cut(s) 22, 46, 445
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 60, 71, 220, 308
MseI TTAA 4 cut(s) 74, 165, 309, 402
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeII GATC 2 cut(s) 263, 361
NlaIII CATG 4 cut(s) 36, 331, 336, 463
NlaIV GGNNCC 1 cut(s) 208
NspI RCATGY 2 cut(s) 336, 463
PciI ACATGT 1 cut(s) 459
Ple19I CGATCG 1 cut(s) 266
PscI ACATGT 1 cut(s) 459
PshAI GACNNNNGTC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 14
PvuI CGATCG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 74, 165, 309, 402
Sau3AI GATC 2 cut(s) 263, 361
Sau96I GGNCC 1 cut(s) 14
SetI ASST 4 cut(s) 19, 139, 196, 212
SfaNI GCATC 2 cut(s) 207, 396
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 3 cut(s) 22, 46, 445
TaaI ACNGT 1 cut(s) 88
TasI AATT 3 cut(s) 22, 46, 445
Tru1I TTAA 4 cut(s) 74, 165, 309, 402
Tru9I TTAA 4 cut(s) 74, 165, 309, 402
TscAI CASTG 2 cut(s) 16, 227
TspDTI ATGAA 3 cut(s) 204, 243, 411
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 16, 227
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 14
XceI RCATGY 2 cut(s) 336, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.