RchiOBHm_Chr1g0356931

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002130
Physical Location & Seq
Forward (+)
49317925 .. 49319347
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58224

Sequence Viewer

Length: 270 bp
ATGTGGTTGTCAGTGTTGCAAGAAAAACTGATGGTCGACATTGGGCGGATTTGTGCACTGCCGCTGGGTGATCAACAGAGTTCTTTGAGGAATGCTTATGGCCCCGCACTGCTGTGTGCTATATACTTTGCAGTGATTCCTAATCTTGAAGGTCCTGCTGTCAGTCATCAGTACTGTGCTTTGCGTTTAATACAGGCAATACCGGACAAATGTTTATATCAACTCGCTGGGAAGCTGGTATGTCATTGGAAATTTCATGTCTTAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

89

Amino Acids

9.95

Weight (kDa)

8.33

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AciI CCGC 3 cut(s) 46, 62, 105
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 1 cut(s) 149
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw21I GWGCWC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 54
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 101, 152
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 58
BccI CCATC 1 cut(s) 25
BclI TGATCA 1 cut(s) 70
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmcAI AGTACT 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 101, 152
BmiI GGNNCC 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 58
BseYI CCCAGC 2 cut(s) 64, 227
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 203
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 3 cut(s) 46, 62, 105
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 103
BssMI GATC 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 176
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 102
BtsI GCAGTG 3 cut(s) 56, 107, 138
BtsIMutI CAGTG 4 cut(s) 18, 56, 107, 138
Cfr13I GGNCC 2 cut(s) 101, 152
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 257
CviJI RGCY 2 cut(s) 102, 235
CviKI_1 RGCY 2 cut(s) 102, 235
CviQI GTAC 1 cut(s) 172
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 152
FaeI CATG 1 cut(s) 260
FaiI YATR 6 cut(s) 99, 122, 124, 217, 241, 258
FatI CATG 1 cut(s) 256
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
GsaI CCCAGC 2 cut(s) 68, 231
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 260
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 136
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 37, 56
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 2 cut(s) 37, 56
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 19, 56, 131
Hsp92II CATG 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 6 cut(s) 50, 168, 179, 213, 216, 221
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 251, 264
MnlI CCTC 1 cut(s) 81
MseI TTAA 2 cut(s) 188, 263
MslI CAYNNNNRTG 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 97
NdeII GATC 1 cut(s) 70
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 112
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 152
PspFI CCCAGC 2 cut(s) 64, 227
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 101, 152
PspPPI RGGWCCY 1 cut(s) 152
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 112
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 188, 263
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 2 cut(s) 101, 152
ScaI AGTACT 1 cut(s) 173
SduI GDGCHC 1 cut(s) 58
SetI ASST 2 cut(s) 154, 237
SinI GGWCC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 2 cut(s) 251, 264
SsiI CCGC 3 cut(s) 46, 62, 105
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 36
TasI AATT 2 cut(s) 251, 264
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 188, 263
Tru9I TTAA 2 cut(s) 188, 263
TscAI CASTG 4 cut(s) 18, 63, 114, 138
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 4 cut(s) 18, 63, 114, 138
VneI GTGCAC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.