Rh1AG266600

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002130
Physical Location & Seq
Forward (+)
49327312 .. 49329602
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG266600.1

Sequence Viewer

Length: 612 bp
ATGGGTGAAGATCATATATTTCAAGGTCATCAATGGCTTACTGATTGTTGTGACTCCCTCTCATATTGCGCTGGGGAGCTCTTCCCAGAGCATAAAGTTCGGGTGGAAGTTAAGAGGACTTACATTTTGGTCTATCTCTGGTTGTCGTTTGATTTCAACAATCCGTCAAATAGTGGGATGAATATGGATACAGGCTCTATGCTATTGAAGAATGATCGTTGGAGAGTATTCTTGGATTTTTTCGGTAAATGTTGCCTTAATAGAGGAGTTTCAGGCATGACATATGTCCGGCAAGTGATATATGGTGATGATCCGTTGCTTGTTATTTTGTCTGAAGATACTGATGAACTTAAAATGCTACATCTTAACCTTCCAGTTTCTTATATCTCACAAAATTGGTCAGTTCAACATGTAGTGGCTAGCAAGGATGGAATGTACTTAGCAATTGCTGATCTCCATGGGTTAATCATGTACAACACGATTCAAGAAGTGGTGTATTTGGAGACATTACTCAGGAACAGAAGATTCAGAGCAAAGTTTTGTTATGGATATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTTGCCGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

203

Amino Acids

23.81

Weight (kDa)

6.14

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RIC1_2nd PF25440 113 - 161 9e-10 RIC1 second beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 2 cut(s) 437, 473
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 5 cut(s) 23, 157, 208, 407, 485
AluBI AGCT 2 cut(s) 79, 591
AluI AGCT 2 cut(s) 79, 591
Alw21I GWGCWC 2 cut(s) 81, 593
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 1 cut(s) 305
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 17, 317, 569
AsuNHI GCTAGC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 81, 593
Bbv12I GWGCWC 2 cut(s) 81, 593
BccI CCATC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciVI GTATCC 1 cut(s) 181
BclI TGATCA 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 420
BfuI GTATCC 1 cut(s) 181
BmtI GCTAGC 1 cut(s) 423
BoxI GACNNNNGTC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 2 cut(s) 183, 433
BseMII CTCAG 1 cut(s) 526
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 81, 593
BsiSI CCGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 81, 593
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 5 cut(s) 10, 214, 310, 451, 583
Bsp19I CCATGG 1 cut(s) 457
BspCNI CTCAG 1 cut(s) 525
BspOI GCTAGC 1 cut(s) 423
BspPI GGATC 1 cut(s) 305
BspQI GCTCTTC 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 5 cut(s) 10, 214, 310, 451, 583
BssT1I CCWWGG 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 439, 512
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 2 cut(s) 183, 433
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 5 cut(s) 13, 217, 313, 454, 586
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 5 cut(s) 10, 214, 310, 451, 583
BstNSI RCATGY 1 cut(s) 413
BstPAI GACNNNNGTC 1 cut(s) 284
BsuI GTATCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 2 cut(s) 183, 433
Cac8I GCNNGC 1 cut(s) 421
CfoI GCGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 436, 472
CviAII CATG 4 cut(s) 277, 410, 458, 469
CviJI RGCY 5 cut(s) 37, 79, 195, 419, 591
CviKI_1 RGCY 5 cut(s) 37, 79, 195, 419, 591
CviQI GTAC 2 cut(s) 436, 472
DdeI CTNAG 2 cut(s) 439, 512
DpnI GATC 5 cut(s) 12, 216, 312, 453, 585
DpnII GATC 5 cut(s) 10, 214, 310, 451, 583
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Ecl136II GAGCTC 2 cut(s) 79, 591
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 2 cut(s) 81, 593
Eco32I GATATC 1 cut(s) 575
Eco53kI GAGCTC 2 cut(s) 79, 591
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 2 cut(s) 79, 591
EcoRV GATATC 1 cut(s) 575
EcoT14I CCWWGG 1 cut(s) 457
EcoT38I GRGCYC 2 cut(s) 81, 593
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 4 cut(s) 280, 413, 461, 472
FatI CATG 4 cut(s) 276, 409, 457, 468
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 583
FokI GGATG 2 cut(s) 190, 440
FriOI GRGCYC 2 cut(s) 81, 593
FspBI CTAG 1 cut(s) 420
GlaI GCGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 75
HapII CCGG 1 cut(s) 289
HhaI GCGC 1 cut(s) 71
Hin1II CATG 4 cut(s) 280, 413, 461, 472
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 3 cut(s) 53, 481, 525
HpaII CCGG 1 cut(s) 289
HphI GGTGA 3 cut(s) 17, 317, 569
Hpy188I TCNGA 3 cut(s) 334, 530, 588
Hpy188III TCNNGA 2 cut(s) 485, 514
HpyAV CCTTC 1 cut(s) 380
HpyF3I CTNAG 2 cut(s) 439, 512
Hsp92II CATG 4 cut(s) 280, 413, 461, 472
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 5 cut(s) 10, 214, 310, 451, 583
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 57, 99, 124, 177, 258, 302, 387, 499
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 50
MalI GATC 5 cut(s) 12, 216, 312, 453, 585
MboI GATC 5 cut(s) 10, 214, 310, 451, 583
MboII GAAGA 5 cut(s) 20, 73, 220, 347, 534
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 2 cut(s) 81, 593
MluCI AATT 3 cut(s) 394, 444, 554
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 3 cut(s) 68, 108, 257
MseI TTAA 5 cut(s) 111, 258, 351, 366, 464
MspI CCGG 1 cut(s) 289
MunI CAATTG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 457
NdeI CATATG 1 cut(s) 283
NdeII GATC 5 cut(s) 10, 214, 310, 451, 583
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 4 cut(s) 280, 413, 461, 472
NmuCI GTSAC 1 cut(s) 50
NspI RCATGY 1 cut(s) 413
PciI ACATGT 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 481, 525
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PscI ACATGT 1 cut(s) 409
PshAI GACNNNNGTC 1 cut(s) 284
Psp124BI GAGCTC 2 cut(s) 81, 593
PspFI CCCAGC 1 cut(s) 71
RsaI GTAC 2 cut(s) 437, 473
RsaNI GTAC 2 cut(s) 436, 472
SacI GAGCTC 2 cut(s) 81, 593
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 5 cut(s) 111, 258, 351, 366, 464
Sau3AI GATC 5 cut(s) 10, 214, 310, 451, 583
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 2 cut(s) 81, 593
SetI ASST 5 cut(s) 28, 81, 372, 582, 593
Sse9I AATT 3 cut(s) 394, 444, 554
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 2 cut(s) 81, 593
StyI CCWWGG 1 cut(s) 457
TasI AATT 3 cut(s) 394, 444, 554
TatI WGTACW 2 cut(s) 435, 471
TfiI GAWTC 2 cut(s) 481, 525
Tru1I TTAA 5 cut(s) 111, 258, 351, 366, 464
Tru9I TTAA 5 cut(s) 111, 258, 351, 366, 464
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 194, 360, 567
TspGWI ACGGA 2 cut(s) 153, 303
XceI RCATGY 1 cut(s) 413
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.