Rh1DG261500

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002130
Physical Location & Seq
Forward (+)
47869718 .. 47870940
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG261500.1

Sequence Viewer

Length: 483 bp
ATGATGACTGGTGGCTCCTCCATGTTCATCAATATGTGTGCAGTACTGCAGTTACTGGCATTTGTGAGTGATGATAGGAAAAAGGTGCTTCGTGCATATTTTAGTATGCCAGTGTGCATTCGGGTGGAAGTTAAGAGGACTTACATTTTGGTCTATCTCTGGTTGTCGTTTGATTTCAACAATCCATCAAATAGTGGGATGAATATGGATACAGGCTCTATGCTATTGAAGAACGATCGTTGGAGAGTATTCTTGGATTTTTATTCGATGCTGATGAACTTAAGATGGTTAAGATGTAACCTTCCAGTTTCTTATATCTCACAAAATTGGTCAGTTCAACATGTAGCGGCTAGCAAGGATGGAATGTACTTAGCAATTGCTGATCTCCATGGGTTAATCATGTACAACACGATTCAAGAAGTGGTGTATTTGGAGACATTACTCAGGAACAGAAGATTCAGAGCAAAGTTTTGTTATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

160

Amino Acids

18.78

Weight (kDa)

9.41

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RIC1_2nd PF25440 93 - 138 1.6e-09 RIC1 second beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 347
AfaI GTAC 3 cut(s) 45, 368, 404
AflII CTTAAG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 4 cut(s) 178, 229, 338, 416
Alw26I GTCTC 1 cut(s) 428
AlwNI CAGNNNCTG 1 cut(s) 55
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AsuNHI GCTAGC 1 cut(s) 350
BccI CCATC 3 cut(s) 193, 279, 353
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 280
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
BmcAI AGTACT 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 258
BmtI GCTAGC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 388
Bse1I ACTGG 4 cut(s) 13, 60, 110, 305
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 2 cut(s) 204, 364
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 4 cut(s) 13, 60, 110, 305
BseRI GAGGAG 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 238
BsiEI CGRYCG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 2 cut(s) 235, 382
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 354
BspTI CTTAAG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 4 cut(s) 13, 60, 110, 305
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 2 cut(s) 235, 382
BssT1I CCWWGG 1 cut(s) 388
BstAFI CTTAAG 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 370, 443
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 2 cut(s) 204, 364
BstKTI GATC 2 cut(s) 238, 385
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 235, 382
BstMCI CGRYCG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 47
BsuI GTATCC 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 204, 364
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 55
Csp6I GTAC 3 cut(s) 44, 367, 403
CviAII CATG 4 cut(s) 22, 341, 389, 400
CviJI RGCY 3 cut(s) 15, 216, 350
CviKI_1 RGCY 3 cut(s) 15, 216, 350
CviQI GTAC 3 cut(s) 44, 367, 403
DdeI CTNAG 2 cut(s) 370, 443
DpnI GATC 2 cut(s) 237, 384
DpnII GATC 2 cut(s) 235, 382
Eco130I CCWWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 4 cut(s) 25, 344, 392, 403
FatI CATG 4 cut(s) 21, 340, 388, 399
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 2 cut(s) 211, 371
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 351
GluI GCNGC 1 cut(s) 348
Hin1II CATG 4 cut(s) 25, 344, 392, 403
HinfI GANTC 2 cut(s) 412, 456
Hpy188I TCNGA 1 cut(s) 461
Hpy188III TCNNGA 2 cut(s) 416, 445
HpyAV CCTTC 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 41, 49, 95, 117
HpyF3I CTNAG 2 cut(s) 370, 443
Hsp92II CATG 4 cut(s) 25, 344, 392, 403
Kzo9I GATC 2 cut(s) 235, 382
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 41, 123, 145, 198, 318, 430
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 51, 296
MalI GATC 2 cut(s) 237, 384
MboI GATC 2 cut(s) 235, 382
MboII GAAGA 2 cut(s) 241, 465
MfeI CAATTG 1 cut(s) 375
MluCI AATT 2 cut(s) 325, 375
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 2 cut(s) 28, 129
MseI TTAA 4 cut(s) 132, 281, 290, 395
MslI CAYNNNNRTG 2 cut(s) 32, 122
MspCI CTTAAG 1 cut(s) 280
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 117
NcoI CCATGG 1 cut(s) 388
NdeII GATC 2 cut(s) 235, 382
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 4 cut(s) 25, 344, 392, 403
NlaIV GGNNCC 1 cut(s) 16
NspI RCATGY 1 cut(s) 344
PciI ACATGT 1 cut(s) 340
PctI GAATGC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 412, 456
PkrI GCNGC 1 cut(s) 349
Ple19I CGATCG 1 cut(s) 238
PscI ACATGT 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 55
PvuI CGATCG 1 cut(s) 238
RsaI GTAC 3 cut(s) 45, 368, 404
RsaNI GTAC 3 cut(s) 44, 367, 403
RseI CAYNNNNRTG 2 cut(s) 32, 122
SaqAI TTAA 4 cut(s) 132, 281, 290, 395
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 235, 382
ScaI AGTACT 1 cut(s) 45
SetI ASST 2 cut(s) 87, 303
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 47
SmiMI CAYNNNNRTG 2 cut(s) 32, 122
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 2 cut(s) 325, 375
SsiI CCGC 1 cut(s) 347
SspMI CTAG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 388
TaqI TCGA 1 cut(s) 266
TasI AATT 2 cut(s) 325, 375
TatI WGTACW 3 cut(s) 43, 366, 402
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 412, 456
Tru1I TTAA 4 cut(s) 132, 281, 290, 395
Tru9I TTAA 4 cut(s) 132, 281, 290, 395
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 16, 215, 290
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 280
XceI RCATGY 1 cut(s) 344
XspI CTAG 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.