RchiOBHm_Chr1g0356901

RIC1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002130
Physical Location & Seq
Forward (+)
49313883 .. 49315299
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58221

Sequence Viewer

Length: 240 bp
ATGGTTTCTTATATCTCACAAAATTGGTCAGTTCAACATGTAGTGGCTAGCAAGGATGGAATGTACTTAGCAATTGCTGATCTCCATGGGTTAATCATGTACAACACGATTCAAGAAGTGGTGTATTTGGAGACATTACTCAGGAACAGAAGATTCAGAGCAAAGTTTTGTTATGGATATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTTGCCGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

79

Amino Acids

9.44

Weight (kDa)

9.0

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RIC1_2nd PF25440 3 - 37 6.2e-07 RIC1 second beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 65, 101
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 2 cut(s) 35, 113
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 197
AsuNHI GCTAGC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 221
BccI CCATC 1 cut(s) 50
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 48
BmtI GCTAGC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 221
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 79, 211
Bsp19I CCATGG 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 153
BspOI GCTAGC 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 79, 211
BssT1I CCWWGG 1 cut(s) 85
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 67, 140
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 82, 214
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 79, 211
BstNSI RCATGY 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 64, 100
CviAII CATG 3 cut(s) 38, 86, 97
CviJI RGCY 2 cut(s) 47, 219
CviKI_1 RGCY 2 cut(s) 47, 219
CviQI GTAC 2 cut(s) 64, 100
DdeI CTNAG 2 cut(s) 67, 140
DpnI GATC 2 cut(s) 81, 213
DpnII GATC 2 cut(s) 79, 211
Ecl136II GAGCTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 221
Eco32I GATATC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 219
EcoRV GATATC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 3 cut(s) 41, 89, 100
FaiI YATR 6 cut(s) 12, 39, 87, 98, 174, 180
FatI CATG 3 cut(s) 37, 85, 96
FbaI TGATCA 1 cut(s) 211
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 221
FspBI CTAG 1 cut(s) 48
Hin1II CATG 3 cut(s) 41, 89, 100
HinfI GANTC 2 cut(s) 109, 153
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 158, 216
Hpy188III TCNNGA 2 cut(s) 113, 142
HpyF3I CTNAG 2 cut(s) 67, 140
Hsp92II CATG 3 cut(s) 41, 89, 100
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 79, 211
LpnPI CCDG 1 cut(s) 127
MaeI CTAG 1 cut(s) 48
MalI GATC 2 cut(s) 81, 213
MboI GATC 2 cut(s) 79, 211
MboII GAAGA 1 cut(s) 162
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 3 cut(s) 22, 72, 182
MseI TTAA 1 cut(s) 92
MunI CAATTG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 85
NdeII GATC 2 cut(s) 79, 211
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 3 cut(s) 41, 89, 100
NspI RCATGY 1 cut(s) 41
PciI ACATGT 1 cut(s) 37
PfeI GAWTC 2 cut(s) 109, 153
PscI ACATGT 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 221
RsaI GTAC 2 cut(s) 65, 101
RsaNI GTAC 2 cut(s) 64, 100
SacI GAGCTC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 2 cut(s) 79, 211
SduI GDGCHC 1 cut(s) 221
SetI ASST 2 cut(s) 210, 221
Sse9I AATT 3 cut(s) 22, 72, 182
SspMI CTAG 1 cut(s) 48
SstI GAGCTC 1 cut(s) 221
StyI CCWWGG 1 cut(s) 85
TasI AATT 3 cut(s) 22, 72, 182
TatI WGTACW 2 cut(s) 63, 99
TfiI GAWTC 2 cut(s) 109, 153
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 195
XceI RCATGY 1 cut(s) 41
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.