Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002130

Physical Location & Seq

Genomic Coordinates Reverse (-)

14584624 .. 14585561

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTACCTTACAAGGGTTGTCAAACCTATGCAGGCAACACTTGATGAATCGTTATATGAACTCGCTGGGGAGCTGTTGAGGTTCTTGCTGAGATCTGGAAGGGAATATGAACAGCCATCCACAGATTCAGACAGACTATCTCCCAAAATTTTGGGCTATATCGGTTTCCGTACTAACTTCAGAAAGCAGTCCTTGGATAAGAGGTTGGTGCACACTTATGCATTCCTTTCGAGCAGCACCTCATTTAAGGAGCAGAACGCACATGTTGCTTCCGCGAAGAATATCGTAGAAAGCCATGCTAACCTTTTGATGTCAGGCAAAGAGCTCTCAAAGCTAGTTGCATTTGTGAAAGGCGCTCAGTTTGATTTAGTGGAATATCTTCAAAGAGAGAGAAATGGAAGTGCAAGGCTGGAGAATTTTGCTTCAGGGCTGGAATTAATAGGACAAAAGGCATCAGAATCTGAAAATCCCTTTATTCAAGTCCGGTTTGATGCAGAATTCCTTTTGGCATATCTGTGCTCTGTCAAGTTCAAAGAGTGGATTGTTGTCCTGGCCACTCTTTTAAGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

192

Amino Acids

21.74

Weight (kDa)

8.94

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61480 AT3G61480 AT5G28350 AT5G28350
fragaria_vesca	FvH4_5g28900 FvH4_5g28900 FvH4_5g28900
malus_domestica	MD01G1067900.v1.1 MD01G1068000.v1.1 MD11G1239500.v1.1
prunus_persica	Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1
pyrus_communis	pycom01g09700 pycom01g09710 pycom07g13050 pycom11g21100
rosa_chinensis	RchiOBHm_Chr1g0356891 RchiOBHm_Chr1g0356901 RchiOBHm_Chr1g0356911 RchiOBHm_Chr1g0356921 RchiOBHm_Chr1g0356931 RchiOBHm_Chr7g0221211
rosa_laevigata	RLG00000002173 RLG00000028071
rosa_multiflora	Rmu_sc0000324.1_g000014
rosa_roxburghii	Rroxscaffold_3G00238580 Rroxscaffold_4G00299210
rosa_rugosa	Rorug01G0251900 Rorug01G0252000 Rorug07G0201300
rosa_samantha	Rh1AG266600 Rh1AG266700 Rh1BG234000 Rh1CG250100 Rh1DG261500 Rh6DG315800 Rh7AG340100 Rh7BG331300 Rh7CG358100 Rh7DG338800 Rh7DG338900
rosa_wichuraiana	Rw1G023540 Rw7G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	3 cut(s)	147, 415, 497
AcuI	CTGAAG	2 cut(s)	163, 408
AfaI	GTAC	2 cut(s)	5, 172
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	383, 479, 532
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	3 cut(s)	73, 325, 334
AluI	AGCT	3 cut(s)	73, 325, 334
Alw21I	GWGCWC	3 cut(s)	213, 327, 521
Alw44I	GTGCAC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	552
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	3 cut(s)	147, 415, 497
AseI	ATTAAT	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	3 cut(s)	213, 327, 521
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	551
BfaI	CTAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	357
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	461, 481
BpmI	CTGGAG	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	551
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	80, 371
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	569
BsiHKAI	GWGCWC	3 cut(s)	213, 327, 521
BsiSI	CCGG	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	3 cut(s)	213, 327, 521
Bsp143I	GATC	3 cut(s)	92, 566, 570
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	2 cut(s)	81, 370
BspDI	ATCGAT	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	92, 566, 570
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	89, 357
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	3 cut(s)	95, 569, 573
BstMBI	GATC	3 cut(s)	92, 566, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 331
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	554
BsuTUI	ATCGAT	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	356
ClaI	ATCGAT	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	4, 171
CviAII	CATG	2 cut(s)	263, 296
CviJI	RGCY	9 cut(s)	73, 115, 156, 294, 325, 334, 409, 430, 554
CviKI_1	RGCY	9 cut(s)	73, 115, 156, 294, 325, 334, 409, 430, 554
CviQI	GTAC	2 cut(s)	4, 171
DdeI	CTNAG	2 cut(s)	89, 357
DpnI	GATC	3 cut(s)	94, 568, 572
DpnII	GATC	3 cut(s)	92, 566, 570
EaeI	YGGCCR	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	163, 408
EcoICRI	GAGCTC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	266, 299
FaiI	YATR	9 cut(s)	29, 55, 57, 108, 159, 219, 264, 297, 511
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	2 cut(s)	262, 295
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	1 cut(s)	235
GsaI	CCCAGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	484
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	266, 299
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HinfI	GANTC	3 cut(s)	47, 125, 458
HpaII	CCGG	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	130, 182, 457, 463, 575
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	31, 211, 221, 341, 404, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 331
HpyF3I	CTNAG	2 cut(s)	89, 357
Hsp92II	CATG	2 cut(s)	266, 299
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	92, 566, 570
LmnI	GCTCC	2 cut(s)	70, 250
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	2 cut(s)	461, 481
MaeI	CTAG	1 cut(s)	335
MalI	GATC	3 cut(s)	94, 568, 572
MboI	GATC	3 cut(s)	92, 566, 570
MboII	GAAGA	2 cut(s)	289, 371
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	3 cut(s)	213, 327, 521
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	4 cut(s)	147, 415, 434, 497
MluNI	TGGCCA	1 cut(s)	554
MnlI	CCTC	3 cut(s)	72, 195, 250
Mox20I	TGGCCA	1 cut(s)	554
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	3 cut(s)	246, 437, 563
MslI	CAYNNNNRTG	2 cut(s)	216, 514
Msp20I	TGGCCA	1 cut(s)	554
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	266, 331
NdeII	GATC	3 cut(s)	92, 566, 570
NlaIII	CATG	2 cut(s)	266, 299
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	47, 125, 458
PkrI	GCNGC	1 cut(s)	236
PscI	ACATGT	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	549
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	2 cut(s)	5, 172
RsaNI	GTAC	2 cut(s)	4, 171
RseI	CAYNNNNRTG	2 cut(s)	216, 514
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	246, 437, 563
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	3 cut(s)	92, 566, 570
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	3 cut(s)	213, 327, 521
SetI	ASST	9 cut(s)	9, 28, 75, 83, 206, 242, 306, 327, 336
SfaNI	GCATC	2 cut(s)	461, 481
SmiMI	CAYNNNNRTG	2 cut(s)	216, 514
Sse9I	AATT	4 cut(s)	147, 415, 434, 497
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	2 cut(s)	230, 569
TasI	AATT	4 cut(s)	147, 415, 434, 497
TfiI	GAWTC	3 cut(s)	47, 125, 458
Tru1I	TTAA	3 cut(s)	246, 437, 563
Tru9I	TTAA	3 cut(s)	246, 437, 563
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	3 cut(s)	60, 72, 123
TspGWI	ACGGA	1 cut(s)	158
VneI	GTGCAC	1 cut(s)	209
VspI	ATTAAT	1 cut(s)	437
XapI	RAATTY	3 cut(s)	147, 415, 497
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.