Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002130

Physical Location & Seq

Genomic Coordinates Forward (+)

17176201 .. 17178048

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1068000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAACAACCAGTCATTGTGAAGCTTGAAGGTCCTGCAGTCAGTCAATATTGTGCTTTGCGTTTACTACAGGCAACACTTGATGAATCGTTATATGAACTCGCTGGGGAGCTGGTATCTGTGAGGTTCTTGCTGAGATCGGGAAGGGAATATGAACAGCCATCAACAGATTCAGATGGACTATCTCCCAAAATTTTGGGCTATTTCGGTTTCCGTACTAATTTCAGAAAGCAGTCCTTGGATAAGAGCACCTCATTTAAGGAGCAGAACGCACATGTTGCTTCCGTGAAGAGTATCTTAGAAAGCCATGCTAACTTCTCAAAGCTAGTTGCATTTGTGGAAGGCACTCAGTTTGATTTAGTGGAATATCTTCAAAGAGAGAAAAATGGAAGTGCTCGGCTGGAGAATTTTGCTTCAGGGCTGGAATTAATAGACAAAAGGCATCAGCATCTGAAAATCCTTTTACTCCAAATGGGAACACTACAGAGCCGGTTTGATGCAGAATTCCTTATGGCATATATGTGCTCTGTCAAGTTCAAAGAGTGGATTGTTGTCCTGGCCACCCTTTTAAGGCGATCTGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

196

Amino Acids

22.21

Weight (kDa)

8.49

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61480 AT3G61480 AT5G28350 AT5G28350
fragaria_vesca	FvH4_5g28900 FvH4_5g28900 FvH4_5g28900
malus_domestica	MD01G1067900.v1.1 MD01G1068000.v1.1 MD11G1239500.v1.1
prunus_persica	Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1
pyrus_communis	pycom01g09700 pycom01g09710 pycom07g13050 pycom11g21100
rosa_chinensis	RchiOBHm_Chr1g0356891 RchiOBHm_Chr1g0356901 RchiOBHm_Chr1g0356911 RchiOBHm_Chr1g0356921 RchiOBHm_Chr1g0356931 RchiOBHm_Chr7g0221211
rosa_laevigata	RLG00000002173 RLG00000028071
rosa_multiflora	Rmu_sc0000324.1_g000014
rosa_roxburghii	Rroxscaffold_3G00238580 Rroxscaffold_4G00299210
rosa_rugosa	Rorug01G0251900 Rorug01G0252000 Rorug07G0201300
rosa_samantha	Rh1AG266600 Rh1AG266700 Rh1BG234000 Rh1CG250100 Rh1DG261500 Rh6DG315800 Rh7AG340100 Rh7BG331300 Rh7CG358100 Rh7DG338800 Rh7DG338900
rosa_wichuraiana	Rw1G023540 Rw7G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	3 cut(s)	192, 406, 503
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	29, 374, 538
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	3 cut(s)	25, 112, 325
AluI	AGCT	3 cut(s)	25, 112, 325
Alw21I	GWGCWC	3 cut(s)	251, 397, 527
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	558
ApoI	RAATTY	3 cut(s)	192, 406, 503
AseI	ATTAAT	1 cut(s)	428
Asp700I	GAANNNNTTC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	560
Bbv12I	GWGCWC	3 cut(s)	251, 397, 527
BccI	CCATC	2 cut(s)	169, 170
BciT130I	CCWGG	1 cut(s)	557
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	3 cut(s)	36, 68, 482
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	3 cut(s)	451, 457, 487
BpmI	CTGGAG	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse118I	RCCGGY	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	125, 362, 570
BseNI	ACTGG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	560
BsiHKAI	GWGCWC	3 cut(s)	251, 397, 527
BsiSI	CCGG	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	570
BsnI	GGCC	1 cut(s)	560
Bsp1286I	GDGCHC	3 cut(s)	251, 397, 527
Bsp143I	GATC	2 cut(s)	137, 575
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	3 cut(s)	126, 361, 571
BspMAI	CTGCAG	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	137, 575
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstDEI	CTNAG	4 cut(s)	134, 298, 348, 579
BstKTI	GATC	2 cut(s)	140, 578
BstMBI	GATC	2 cut(s)	137, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	3 cut(s)	36, 68, 482
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	560
CaiI	CAGNNNCTG	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	275, 308
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	4 cut(s)	134, 298, 348, 579
DpnI	GATC	2 cut(s)	139, 577
DpnII	GATC	2 cut(s)	137, 575
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	278, 311
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 281, 313
FatI	CATG	2 cut(s)	274, 307
FspBI	CTAG	1 cut(s)	326
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	490
Hin1II	CATG	2 cut(s)	278, 311
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	86, 170
HpaII	CCGG	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	4 cut(s)	175, 227, 453, 580
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	23, 138, 335
HpyCH4V	TGCA	3 cut(s)	38, 332, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	4 cut(s)	134, 298, 348, 579
Hsp92II	CATG	2 cut(s)	278, 311
Kzo9I	GATC	2 cut(s)	137, 575
LmnI	GCTCC	2 cut(s)	109, 262
LweI	GCATC	3 cut(s)	451, 457, 487
MaeI	CTAG	1 cut(s)	326
MalI	GATC	2 cut(s)	139, 577
MboI	GATC	2 cut(s)	137, 575
MboII	GAAGA	2 cut(s)	301, 362
MhlI	GDGCHC	3 cut(s)	251, 397, 527
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	5 cut(s)	192, 220, 406, 425, 503
MluNI	TGGCCA	1 cut(s)	560
MnlI	CCTC	3 cut(s)	117, 262, 574
Mox20I	TGGCCA	1 cut(s)	560
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	3 cut(s)	258, 428, 569
MslI	CAYNNNNRTG	1 cut(s)	520
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	2 cut(s)	137, 575
NlaIII	CATG	2 cut(s)	278, 311
NmeAIII	GCCGAG	1 cut(s)	376
NspI	RCATGY	1 cut(s)	278
PciI	ACATGT	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	86, 170
PpuMI	RGGWCCY	1 cut(s)	32
PscI	ACATGT	1 cut(s)	274
PshBI	ATTAAT	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	258, 428, 569
Sau3AI	GATC	2 cut(s)	137, 575
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	3 cut(s)	251, 397, 527
SetI	ASST	7 cut(s)	27, 34, 114, 128, 254, 327, 585
SfaNI	GCATC	3 cut(s)	451, 457, 487
SfcI	CTRYAG	3 cut(s)	36, 68, 482
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	520
Sse9I	AATT	5 cut(s)	192, 220, 406, 425, 503
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	237
TasI	AATT	5 cut(s)	192, 220, 406, 425, 503
TfiI	GAWTC	2 cut(s)	86, 170
Tru1I	TTAA	3 cut(s)	258, 428, 569
Tru9I	TTAA	3 cut(s)	258, 428, 569
TspDTI	ATGAA	4 cut(s)	17, 99, 111, 168
TspGWI	ACGGA	2 cut(s)	203, 274
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	428
XapI	RAATTY	3 cut(s)	192, 406, 503
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.