Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002130

Physical Location & Seq

Genomic Coordinates Reverse (-)

42961245 .. 42970177

Gene Structure 8933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGTATATGGCATATGGATGGCCACAGGTCATCCCACTTGAACAGGGTTTATGCCCGTCTTCCCAGAAGATCATATATTTCAAGGTCATCAATGGCTTACTGCTTGTTGTGTCTCCCTCTCACCTTGAGCTCTGGAGCTCTTCCCAGCATAAAGTGAGACTGGGCAAGTACATGAGGGATGCTGATTCACTTCAGAGAGAAGGCGAGAATTTGCAAGCAGTCTGGAGCCCTGATGCCAAATTGATCGCTGTTCTTACGTCCTCTTTCTTTCTTCACCTTTTCAAGGTCCAGTTTTCTGAGAAAAAGATACAATTAGGAGGGAAGCAGCCCTCTGGTTTATTTCTTGCTACTATATCTCCTCTTCTCAGTGAGCAGGTGCCATTTGCAGATAAGGACATCATAGTGAGCAATATTGTAAGCGATAGCAAACATATGCTACTTGGACTTTCTGATGGATCACTTTACAGTATCTCATGGAAAGGGGAGTTCTATGGGACTTATGAACTTGATCCAGTTCCACATGATGGCTGTGAAGTTATCCCATCATCACATTCTTTAGATAATGGTGTTGCTTCTAAAGGGGTTCCAGGAACTATTCCTGCCAATAATTGCGTCCCCAGGAAGTCTGCTATTATCCAACTGGAGCTTTGTTTTCCACTTAGGTTACTGTTTGTGTTATATTCTGATGGACAACTGGTGTCATGTTCTATAAGTAAGAAAGGCTTAAAGCATCCTGAATCTATTAAAGCTGAGAAGAGGCTGGGGGCTGGTGATGCTGTATGTACTTCAGTAGCTTCAGAGCAACAAATCCTTGCTGTTGGGACCAAAAGAGGGGTTGTGGAGTTATATGACTTCGCAGAATCTGTATCACTGATCCGATCCGTATCTCTGTATGACTGGGGATACTCAATGGAAGACACTGGACCTGTCAGTTGCATTGCATGGACGCCTGATAATTCTGCTTTTGCAGTTGGGTGGAAGTTAAGAGGACTTACAGTTTGGTCTGTCTCTGGTTGTCGTTTGATGTCAACAATCCGTCAAATAGGTTTAAGTTCAGTATCTTCTCCGGTGGTTAAGCCAGTCAACGAATGCAAATTTGAACCTTTGATGGGTGGCACCTCATTGATGCAGTGGGATGAATATGGATATAGGCTCTATGCTATTGAAGAACGATCGTTGGAGAGGATTCTTGGATTTTCCTTTGGTAAATGTTGCCTTAACAGAGGAGTTTCAGGCATGACATATGTCCGTCAAGTGATATATGGTGATGATCGGTTGCTTGTTGTTCAGTCTGAAGATACTGATGAACTTAAGATGCTACATCTTAACCTTCCAGTTTCTTATATCTCACAAAATTGGCCAGTTCAACATGTAGCGGCTAGCAAAGATGGAATGTACTTAGCAGTTGCTGGTCTCCATGGGTTAATCATATATGATATACGATTCAAGAAGTGGCGAGTGTTTGGAGACATTACTCAGGAACAGAAGATTCAGTGCAAAGGTTTGTTATGGATGGGGAAGATTGTTGTTGTCTGCAACTACATTGATTCTACTAACACATATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTTGCCGAAAGTTGTTGCTTGCGAAACCAATGGTCATGGATGTCTATCAAGATTATATACTAGTCACATATCGCCCGTTTGATGTACACATATTCCATGTGAAATTATTTGGTGAATTGACGCCTTTCACTACTCCAAATCTAGAGCTTTCTACAGTACGAGAACTCTCAATTATGACTGCGAAGAGCCATCCTGCAGCAATGCGTTTTGTCCCAGATCAGCTTCCAAGAGATCGCATTTCAGATAATCATACGTCTAACTCAGATCCTTTATTAAAAGAGCCTGCAAGGTGTTTGATATTGAGAGTAAATGGGGAGCTTTCACTTCTTGATTTGGACGATGGACGTGAAAGGGAGCTCACTGATTCTGTTGAATTATTTTGGGTTACATGTGGTCAATCGGAGGAAAAATCAAATCTTATTGAGGAGGTTTCATGGTTAGATTATGGCCACCGCGGAATGCAGGTTTGGTATCCATCTCTGGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAGTTGGATCCGGAGCTTGAATTTGATCGTGAGGTATACCCTCTGGGACTTCTTCCAAATGCTGGGGTGGTTGTTGGTGTTTCCCAGCGAATGTCATTTTCAGCCTGCACAGAGTTTCCGTGTTTTGAGCCAACTCCGCAAGCTCAAACTATATTACATTGTCTTCTAAGGCACCTTATTCAGAGGGACAAAAGGGAGGAAGCTTTAAGATTGGCCCAATTATCAGCTGAAAAACCTCATTTCTCTCACTGTATGGAGTGGCTTCTGTTTACTGTATTTGAGGCAGACATATCCAGGCAAAGTGCAAACAAGAATCAGAGCTCTGTGCCTAAATATGCAAAGAATTCCTCTCTTTTAGAGAAGACATGTGATTTGCTCAGAAATTTTCCGGAGTATTTTGATGTGGTTGTCAGTGTTGCAAGAAAAACTGATGGTCGACATTGGGCGGATTTGTTCACTGCTGCTGGGAGATCAACAGAGTTGTTTGAGGAATGCTTCCAACGCAGATGGTACCGCACTGCTGCATGCTATATACTTGTGATTGCTAAGCTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTGCGTTTATTACAGGCAACACTGGACGAATCTTTATATGAACTAGCTGGGGAGCTGGTGAGGTTCTTGCTGAGATCTGGAAGGGAATATGAACAAGCATCAACAGATTCAGACAGACAAGCTCCATCATCTCCCAGATTCTTGGGTTATTTCGGTTTTCGTTCTAGTAATAGAAAACAGTCCTTGGATAAAAGCTCTTCATTCAAGGAGCAGAGCGCACATGTTGCTTCTGTGAAGAACATTTTAGAAAGCCATGCTAGCTATTTGATGTCAGGAAAAGAGCTTTCAAAGCTAGTTGCATTTGTGAAAGGCACTCAGTTTGATTTAGTGGAATATCTTCAGCGAGAGAGATATGGATGTGCTCGTTTGGAGAATTTCGCTTCAGGACTTGAATTAATTGGGCAAAAGCTCCAAATGAGTATACTGCAGAGTCGATTTGATGCAGAATTTCTTTTGGCACACATGTGCTCTGTCAAGTTCAAAGAATGGATAGTGGTCCTTGCCACTCTTTTAAGACGATCTGAGGTTCTATTTGATCTTTTCCAGCATGATATGCGGTTGTGGAAAGCATATAGCATCACCCTGCAGTCACATCCCGCCTTTACTGAATACCATGATCTGCTTGGAGATTTGGAAGATCAACTTTCCTCCATTGGAACTTCTCAAGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

1126

Amino Acids

127.44

Weight (kDa)

6.08

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_VPS8	PF23410	250 - 347	2.9e-06	Vps8 beta-propeller
Beta-prop_RIC1_2nd	PF25440	421 - 754	5.2e-90	RIC1 second beta propeller domain
RIC1	PF07064	761 - 936	1.3e-48	RIC1 C-terminal alpha solenoid region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61480 AT3G61480 AT5G28350 AT5G28350
fragaria_vesca	FvH4_5g28900 FvH4_5g28900 FvH4_5g28900
malus_domestica	MD01G1067900.v1.1 MD01G1068000.v1.1 MD11G1239500.v1.1
prunus_persica	Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1
pyrus_communis	pycom01g09700 pycom01g09710 pycom07g13050 pycom11g21100
rosa_chinensis	RchiOBHm_Chr1g0356891 RchiOBHm_Chr1g0356901 RchiOBHm_Chr1g0356911 RchiOBHm_Chr1g0356921 RchiOBHm_Chr1g0356931 RchiOBHm_Chr7g0221211
rosa_laevigata	RLG00000002173 RLG00000028071
rosa_multiflora	Rmu_sc0000324.1_g000014
rosa_roxburghii	Rroxscaffold_3G00238580 Rroxscaffold_4G00299210
rosa_rugosa	Rorug01G0251900 Rorug01G0252000 Rorug07G0201300
rosa_samantha	Rh1AG266600 Rh1AG266700 Rh1BG234000 Rh1CG250100 Rh1DG261500 Rh6DG315800 Rh7AG340100 Rh7BG331300 Rh7CG358100 Rh7DG338800 Rh7DG338900
rosa_wichuraiana	Rw1G023540 Rw7G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	364
Acc36I	ACCTGC	2 cut(s)	364, 2062
Acc65I	GGTACC	1 cut(s)	2634
AccB1I	GGYRCC	4 cut(s)	376, 1115, 2295, 2634
AccB7I	CCANNNNNTGG	2 cut(s)	524, 2186
AccI	GTMKAC	3 cut(s)	2160, 2560, 3127
AccII	CGCG	1 cut(s)	2064
AccIII	TCCGGA	2 cut(s)	2134, 2512
AciI	CCGC	8 cut(s)	1376, 2062, 2064, 2261, 2570, 2638, 3262, 3303
AclWI	GGATC	7 cut(s)	463, 503, 868, 873, 1868, 2126, 2139
AcoI	YGGCCR	3 cut(s)	20, 1358, 2056
AcsI	RAATTY	7 cut(s)	208, 1094, 2144, 2467, 2506, 3079, 3152
AcuI	CTGAAG	6 cut(s)	176, 771, 780, 1314, 3029, 3072
AcyI	GRCGYC	2 cut(s)	947, 1730
AfaI	GTAC	7 cut(s)	170, 784, 1397, 1695, 1767, 2636, 2699
AfiI	CCNNNNNNNGG	6 cut(s)	283, 524, 831, 1109, 2090, 2186
AflII	CTTAAG	1 cut(s)	1310
AflIII	ACRYGT	5 cut(s)	1369, 1997, 2489, 2926, 3168
AhlI	ACTAGT	1 cut(s)	1669
AjiI	CACGTC	1 cut(s)	1955
AjnI	CCWGG	3 cut(s)	586, 617, 2417
AjuI	GAANNNNNNNTTGG	2 cut(s)	2059, 2091
AleI	CACNNNNGTG	1 cut(s)	3169
Alw21I	GWGCWC	7 cut(s)	132, 140, 1604, 1968, 2447, 3070, 3176
Alw26I	GTCTC	5 cut(s)	117, 151, 1012, 1418, 1461
AlwI	GGATC	7 cut(s)	463, 503, 868, 873, 1868, 2126, 2139
AlwNI	CAGNNNCTG	2 cut(s)	863, 1409
Aor13HI	TCCGGA	2 cut(s)	2134, 2512
AoxI	GGCC	4 cut(s)	20, 1358, 2056, 2337
ApeKI	GCWGC	4 cut(s)	325, 1805, 2585, 2645
ApoI	RAATTY	7 cut(s)	208, 1094, 2144, 2467, 2506, 3079, 3152
ArsI	GACNNNNNNTTYG	4 cut(s)	981, 1013, 2479, 2511
AseI	ATTAAT	1 cut(s)	3101
Asp700I	GAANNNNTTC	1 cut(s)	3042
Asp718I	GGTACC	1 cut(s)	2634
AspLEI	GCGC	1 cut(s)	2924
AspS9I	GGNCC	6 cut(s)	286, 822, 923, 2338, 2681, 3202
AsuHPI	GGTGA	8 cut(s)	113, 266, 782, 1277, 1580, 1733, 2776, 3277
AsuNHI	GCTAGC	2 cut(s)	1379, 2963
AvaII	GGWCC	5 cut(s)	286, 822, 923, 2681, 3202
BalI	TGGCCA	3 cut(s)	22, 1360, 2058
BamHI	GGATCC	1 cut(s)	2131
BanI	GGYRCC	4 cut(s)	376, 1115, 2295, 2634
BanII	GRGCYC	6 cut(s)	132, 140, 230, 1604, 1968, 2447
BbsI	GAAGAC	4 cut(s)	51, 921, 2279, 2492
Bbv12I	GWGCWC	7 cut(s)	132, 140, 1604, 1968, 2447, 3070, 3176
BbvI	GCAGC	4 cut(s)	337, 1817, 2572, 2632
BciT130I	CCWGG	3 cut(s)	588, 619, 2419
BciVI	GTATCC	2 cut(s)	896, 2091
BclI	TGATCA	1 cut(s)	1594
BcoDI	GTCTC	5 cut(s)	117, 151, 1012, 1418, 1461
BcuI	ACTAGT	1 cut(s)	1669
BfaI	CTAG	7 cut(s)	1380, 1670, 1751, 2750, 2871, 2964, 2999
BfmI	CTRYAG	4 cut(s)	1761, 1803, 3131, 3290
BfrI	CTTAAG	1 cut(s)	1310
BfuAI	ACCTGC	2 cut(s)	364, 2062
BfuI	GTATCC	2 cut(s)	896, 2091
BglII	AGATCT	1 cut(s)	2780
BisI	GCNGC	5 cut(s)	326, 1377, 1806, 2586, 2646
BlpI	GCTNAGC	1 cut(s)	2670
BlsI	GCNGC	5 cut(s)	327, 1378, 1807, 2587, 2647
BmcAI	AGTACT	1 cut(s)	2699
Bme1390I	CCNGG	3 cut(s)	588, 619, 2419
Bme18I	GGWCC	5 cut(s)	286, 822, 923, 2681, 3202
BmgBI	CACGTC	1 cut(s)	1955
BmgT120I	GGNCC	6 cut(s)	286, 822, 923, 2338, 2681, 3202
BmiI	GGNNCC	8 cut(s)	227, 378, 585, 823, 1117, 2133, 2297, 2636
BmrFI	CCNGG	3 cut(s)	588, 619, 2419
BmrI	ACTGGG	2 cut(s)	170, 907
BmsI	GCATC	9 cut(s)	169, 223, 739, 763, 1116, 1305, 2813, 3136, 3291
BmtI	GCTAGC	2 cut(s)	1383, 2967
BmuI	ACTGGG	2 cut(s)	170, 907
BoxI	GACNNNNGTC	1 cut(s)	1244
BpiI	GAAGAC	4 cut(s)	51, 921, 2279, 2492
BpmI	CTGGAG	3 cut(s)	154, 244, 662
Bpu1102I	GCTNAGC	1 cut(s)	2670
BpuEI	CTTGAG	2 cut(s)	146, 3354
BsaBI	GATNNNNATC	2 cut(s)	883, 1653
BsaHI	GRCGYC	2 cut(s)	947, 1730
BsaI	GGTCTC	1 cut(s)	1418
BsaJI	CCNNGG	4 cut(s)	617, 1417, 2062, 2889
BsaWI	WCCGGW	3 cut(s)	1066, 2134, 2512
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	6 cut(s)	283, 524, 831, 1109, 2090, 2186
Bse3DI	GCAATG	2 cut(s)	936, 1815
Bse8I	GATNNNNATC	2 cut(s)	883, 1653
BseAI	TCCGGA	2 cut(s)	2134, 2512
BseBI	CCWGG	3 cut(s)	588, 619, 2419
BseDI	CCNNGG	4 cut(s)	617, 1417, 2062, 2889
BseJI	GATNNNNATC	2 cut(s)	883, 1653
BseLI	CCNNNNNNNGG	6 cut(s)	283, 524, 831, 1109, 2090, 2186
BseMI	GCAATG	2 cut(s)	936, 1815
BseMII	CTCAG	9 cut(s)	288, 379, 741, 1490, 1884, 2515, 2768, 3035, 3219
BseRI	GAGGAG	3 cut(s)	348, 1239, 2048
BseXI	GCAGC	4 cut(s)	337, 1817, 2572, 2632
BseYI	CCCAGC	6 cut(s)	144, 760, 2186, 2208, 2588, 2753
BsgI	GTGCAG	1 cut(s)	2215
Bsh1236I	CGCG	1 cut(s)	2064
Bsh1285I	CGRYCG	1 cut(s)	1175
BshFI	GGCC	4 cut(s)	22, 1360, 2058, 2339
BshNI	GGYRCC	4 cut(s)	376, 1115, 2295, 2634
BsiEI	CGRYCG	1 cut(s)	1175
BsiHKAI	GWGCWC	7 cut(s)	132, 140, 1604, 1968, 2447, 3070, 3176
BsiSI	CCGG	3 cut(s)	1067, 2135, 2513
BslFI	GGGAC	6 cut(s)	508, 599, 835, 1805, 2184, 2324
BslI	CCNNNNNNNGG	6 cut(s)	283, 524, 831, 1109, 2090, 2186
BsmAI	GTCTC	5 cut(s)	117, 151, 1012, 1418, 1461
BsmFI	GGGAC	6 cut(s)	508, 599, 835, 1805, 2184, 2324
BsmI	GAATGC	3 cut(s)	1094, 2073, 2621
BsnI	GGCC	4 cut(s)	22, 1360, 2058, 2339
Bso31I	GGTCTC	1 cut(s)	1418
Bsp1286I	GDGCHC	8 cut(s)	132, 140, 230, 1604, 1968, 2447, 3070, 3176
Bsp13I	TCCGGA	2 cut(s)	2134, 2512
Bsp1407I	TGTACA	1 cut(s)	1693
Bsp1720I	GCTNAGC	1 cut(s)	2670
Bsp19I	CCATGG	1 cut(s)	1417
BspACI	CCGC	8 cut(s)	1376, 2062, 2064, 2261, 2570, 2638, 3262, 3303
BspANI	GGCC	4 cut(s)	22, 1360, 2058, 2339
BspCNI	CTCAG	9 cut(s)	289, 378, 742, 1489, 1883, 2514, 2769, 3034, 3220
BspEI	TCCGGA	2 cut(s)	2134, 2512
BspFNI	CGCG	1 cut(s)	2064
BspLI	GGNNCC	8 cut(s)	227, 378, 585, 823, 1117, 2133, 2297, 2636
BspMAI	CTGCAG	3 cut(s)	1807, 3135, 3294
BspMI	ACCTGC	2 cut(s)	364, 2062
BspOI	GCTAGC	2 cut(s)	1383, 2967
BspPI	GGATC	7 cut(s)	463, 503, 868, 873, 1868, 2126, 2139
BspQI	GCTCTTC	3 cut(s)	145, 1787, 2908
BspT107I	GGYRCC	4 cut(s)	376, 1115, 2295, 2634
BspTI	CTTAAG	1 cut(s)	1310
BspTNI	GGTCTC	1 cut(s)	1418
BsrDI	GCAATG	2 cut(s)	936, 1815
BsrGI	TGTACA	1 cut(s)	1693
BssECI	CCNNGG	4 cut(s)	617, 1417, 2062, 2889
BssNAI	GTATAC	2 cut(s)	2161, 3128
BssNI	GRCGYC	2 cut(s)	947, 1730
BssT1I	CCWWGG	2 cut(s)	1417, 2889
Bst1107I	GTATAC	2 cut(s)	2161, 3128
Bst2UI	CCWGG	3 cut(s)	588, 619, 2419
Bst4CI	ACNGT	8 cut(s)	467, 669, 997, 1765, 2375, 2398, 2702, 2886
Bst6I	CTCTTC	5 cut(s)	145, 366, 749, 1787, 2908
BstACI	GRCGYC	2 cut(s)	947, 1730
BstAFI	CTTAAG	1 cut(s)	1310
BstAPI	GCANNNNNTGC	2 cut(s)	2930, 3259
BstAUI	TGTACA	1 cut(s)	1693
BstC8I	GCNNGC	8 cut(s)	216, 1381, 1629, 1893, 2230, 2265, 2650, 2965
BstDSI	CCRYGG	2 cut(s)	1417, 2062
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	2064
BstHHI	GCGC	1 cut(s)	2924
BstMAI	GTCTC	5 cut(s)	117, 151, 1012, 1418, 1461
BstMCI	CGRYCG	1 cut(s)	1175
BstMWI	GCNNNNNNNGC	7 cut(s)	773, 2260, 2625, 2930, 2964, 2995, 3259
BstNI	CCWGG	3 cut(s)	588, 619, 2419
BstNSI	RCATGY	6 cut(s)	1373, 2001, 2493, 2652, 2930, 3172
BstPAI	GACNNNNGTC	1 cut(s)	1244
BstSCI	CCNGG	3 cut(s)	586, 617, 2417
BstSFI	CTRYAG	4 cut(s)	1761, 1803, 3131, 3290
BstUI	CGCG	1 cut(s)	2064
BstV1I	GCAGC	4 cut(s)	337, 1817, 2572, 2632
BstV2I	GAAGAC	4 cut(s)	51, 921, 2279, 2492
BstX2I	RGATCY	3 cut(s)	1873, 2131, 2780
BstXI	CCANNNNNNTGG	1 cut(s)	2848
BstYI	RGATCY	3 cut(s)	1873, 2131, 2780
BstZ17I	GTATAC	2 cut(s)	2161, 3128
BsuI	GTATCC	2 cut(s)	896, 2091
BsuRI	GGCC	4 cut(s)	22, 1360, 2058, 2339
BtgI	CCRYGG	2 cut(s)	1417, 2062
BtrI	CACGTC	1 cut(s)	1955
BtsI	GCAGTG	3 cut(s)	1136, 2580, 2640
BveI	ACCTGC	2 cut(s)	364, 2062
Cac8I	GCNNGC	8 cut(s)	216, 1381, 1629, 1893, 2230, 2265, 2650, 2965
CaiI	CAGNNNCTG	2 cut(s)	863, 1409
CfoI	GCGC	1 cut(s)	2924
Cfr13I	GGNCC	6 cut(s)	286, 822, 923, 2338, 2681, 3202
Cfr42I	CCGCGG	1 cut(s)	2065
CseI	GACGC	3 cut(s)	601, 955, 1738
Csp6I	GTAC	7 cut(s)	169, 783, 1396, 1694, 1766, 2635, 2698
CviQI	GTAC	7 cut(s)	169, 783, 1396, 1694, 1766, 2635, 2698
EaeI	YGGCCR	3 cut(s)	20, 1358, 2056
Eam1104I	CTCTTC	5 cut(s)	145, 366, 749, 1787, 2908
EarI	CTCTTC	5 cut(s)	145, 366, 749, 1787, 2908
EciI	GGCGGA	1 cut(s)	2585
Ecl136II	GAGCTC	5 cut(s)	130, 138, 1602, 1966, 2445
Eco130I	CCWWGG	2 cut(s)	1417, 2889
Eco24I	GRGCYC	6 cut(s)	132, 140, 230, 1604, 1968, 2447
Eco31I	GGTCTC	1 cut(s)	1418
Eco32I	GATATC	1 cut(s)	1586
Eco47I	GGWCC	5 cut(s)	286, 822, 923, 2681, 3202
Eco53kI	GAGCTC	5 cut(s)	130, 138, 1602, 1966, 2445
Eco57I	CTGAAG	6 cut(s)	176, 771, 780, 1314, 3029, 3072
EcoICRI	GAGCTC	5 cut(s)	130, 138, 1602, 1966, 2445
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	2681
EcoRI	GAATTC	1 cut(s)	2467
EcoRII	CCWGG	3 cut(s)	586, 617, 2417
EcoRV	GATATC	1 cut(s)	1586
EcoT14I	CCWWGG	2 cut(s)	1417, 2889
EcoT38I	GRGCYC	6 cut(s)	132, 140, 230, 1604, 1968, 2447
ErhI	CCWWGG	2 cut(s)	1417, 2889
FalI	AAGNNNNNCTT	4 cut(s)	707, 739, 3333, 3365
FaqI	GGGAC	6 cut(s)	508, 599, 835, 1805, 2184, 2324
FauI	CCCGC	1 cut(s)	3310
FauNDI	CATATG	4 cut(s)	13, 432, 1243, 1561
FbaI	TGATCA	1 cut(s)	1594
FblI	GTMKAC	3 cut(s)	2160, 2560, 3127
Fnu4HI	GCNGC	5 cut(s)	326, 1377, 1806, 2586, 2646
FriOI	GRGCYC	6 cut(s)	132, 140, 230, 1604, 1968, 2447
Fsp4HI	GCNGC	5 cut(s)	326, 1377, 1806, 2586, 2646
FspBI	CTAG	7 cut(s)	1380, 1670, 1751, 2750, 2871, 2964, 2999
GlaI	GCGC	1 cut(s)	2923
GluI	GCNGC	5 cut(s)	326, 1377, 1806, 2586, 2646
GsaI	CCCAGC	6 cut(s)	148, 764, 2190, 2212, 2592, 2757
GsuI	CTGGAG	3 cut(s)	154, 244, 662
HaeIII	GGCC	4 cut(s)	22, 1360, 2058, 2339
HapII	CCGG	3 cut(s)	1067, 2135, 2513
HgaI	GACGC	3 cut(s)	601, 955, 1738
HhaI	GCGC	1 cut(s)	2924
Hin1I	GRCGYC	2 cut(s)	947, 1730
Hin6I	GCGC	1 cut(s)	2922
HinP1I	GCGC	1 cut(s)	2922
HincII	GTYRAC	4 cut(s)	1029, 1084, 2098, 2561
HindII	GTYRAC	4 cut(s)	1029, 1084, 2098, 2561
HindIII	AAGCTT	2 cut(s)	2325, 2672
HpaII	CCGG	3 cut(s)	1067, 2135, 2513
HphI	GGTGA	8 cut(s)	113, 266, 782, 1277, 1580, 1733, 2776, 3277
Hpy166II	GTNNAC	9 cut(s)	1029, 1084, 1696, 2098, 2161, 2394, 2561, 2580, 3128
Hpy8I	GTNNAC	9 cut(s)	1029, 1084, 1696, 2098, 2161, 2394, 2561, 2580, 3128
HpyAV	CCTTC	4 cut(s)	194, 1340, 2672, 2781
HpyCH4III	ACNGT	8 cut(s)	467, 669, 997, 1765, 2375, 2398, 2702, 2886
HpyCH4IV	ACGT	3 cut(s)	257, 1862, 1954
HpyF10VI	GCNNNNNNNGC	7 cut(s)	773, 2260, 2625, 2930, 2964, 2995, 3259
HpySE526I	ACGT	3 cut(s)	257, 1862, 1954
Hsp92I	GRCGYC	2 cut(s)	947, 1730
HspAI	GCGC	1 cut(s)	2922
Kpn2I	TCCGGA	2 cut(s)	2134, 2512
KpnI	GGTACC	1 cut(s)	2638
Ksp22I	TGATCA	1 cut(s)	1594
KspI	CCGCGG	1 cut(s)	2065
LguI	GCTCTTC	3 cut(s)	145, 1787, 2908
Lsp1109I	GCAGC	4 cut(s)	337, 1817, 2572, 2632
LweI	GCATC	9 cut(s)	169, 223, 739, 763, 1116, 1305, 2813, 3136, 3291
MaeI	CTAG	7 cut(s)	1380, 1670, 1751, 2750, 2871, 2964, 2999
MaeII	ACGT	3 cut(s)	257, 1862, 1954
MaeIII	GTNAC	4 cut(s)	663, 1672, 1993, 3294
MflI	RGATCY	3 cut(s)	1873, 2131, 2780
MhlI	GDGCHC	8 cut(s)	132, 140, 230, 1604, 1968, 2447, 3070, 3176
MlsI	TGGCCA	3 cut(s)	22, 1360, 2058
MluNI	TGGCCA	3 cut(s)	22, 1360, 2058
MlyI	GAGTC	1 cut(s)	3145
MmeI	TCCRAC	4 cut(s)	661, 1158, 2109, 2647
Mox20I	TGGCCA	3 cut(s)	22, 1360, 2058
MroI	TCCGGA	2 cut(s)	2134, 2512
MroXI	GAANNNNTTC	1 cut(s)	3042
MscI	TGGCCA	3 cut(s)	22, 1360, 2058
MslI	CAYNNNNRTG	3 cut(s)	16, 401, 3169
Msp20I	TGGCCA	3 cut(s)	22, 1360, 2058
MspA1I	CMGCKG	2 cut(s)	2064, 2351
MspCI	CTTAAG	1 cut(s)	1310
MspI	CCGG	3 cut(s)	1067, 2135, 2513
MspR9I	CCNGG	3 cut(s)	588, 619, 2419
Mva1269I	GAATGC	3 cut(s)	1094, 2073, 2621
MvaI	CCWGG	3 cut(s)	588, 619, 2419
MvnI	CGCG	1 cut(s)	2064
MwoI	GCNNNNNNNGC	7 cut(s)	773, 2260, 2625, 2930, 2964, 2995, 3259
NcoI	CCATGG	1 cut(s)	1417
NdeI	CATATG	4 cut(s)	13, 432, 1243, 1561
NheI	GCTAGC	2 cut(s)	1379, 2963
NlaIV	GGNNCC	8 cut(s)	227, 378, 585, 823, 1117, 2133, 2297, 2636
NmuCI	GTSAC	2 cut(s)	1672, 3294
NspI	RCATGY	6 cut(s)	1373, 2001, 2493, 2652, 2930, 3172
OliI	CACNNNNGTG	1 cut(s)	3169
PaeI	GCATGC	1 cut(s)	2652
PaqCI	CACCTGC	1 cut(s)	364
PciI	ACATGT	5 cut(s)	1369, 1997, 2489, 2926, 3168
PciSI	GCTCTTC	3 cut(s)	145, 1787, 2908
PctI	GAATGC	3 cut(s)	1094, 2073, 2621
PdmI	GAANNNNTTC	1 cut(s)	3042
PflMI	CCANNNNNTGG	2 cut(s)	524, 2186
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	5 cut(s)	327, 1378, 1807, 2587, 2647
Ple19I	CGATCG	1 cut(s)	1175
PleI	GAGTC	1 cut(s)	3144
PpsI	GAGTC	1 cut(s)	3144
PpuMI	RGGWCCY	1 cut(s)	2681
PscI	ACATGT	5 cut(s)	1369, 1997, 2489, 2926, 3168
PshAI	GACNNNNGTC	1 cut(s)	1244
PshBI	ATTAAT	1 cut(s)	3101
Psp124BI	GAGCTC	5 cut(s)	132, 140, 1604, 1968, 2447
Psp5II	RGGWCCY	1 cut(s)	2681
Psp6I	CCWGG	3 cut(s)	586, 617, 2417
PspFI	CCCAGC	6 cut(s)	144, 760, 2186, 2208, 2588, 2753
PspGI	CCWGG	3 cut(s)	586, 617, 2417
PspN4I	GGNNCC	8 cut(s)	227, 378, 585, 823, 1117, 2133, 2297, 2636
PspPI	GGNCC	6 cut(s)	286, 822, 923, 2338, 2681, 3202
PspPPI	RGGWCCY	1 cut(s)	2681
PstI	CTGCAG	3 cut(s)	1807, 3135, 3294
PstNI	CAGNNNCTG	2 cut(s)	863, 1409
PsuI	RGATCY	3 cut(s)	1873, 2131, 2780
PvuI	CGATCG	1 cut(s)	1175
PvuII	CAGCTG	1 cut(s)	2351
RsaI	GTAC	7 cut(s)	170, 784, 1397, 1695, 1767, 2636, 2699
RsaNI	GTAC	7 cut(s)	169, 783, 1396, 1694, 1766, 2635, 2698
RseI	CAYNNNNRTG	3 cut(s)	16, 401, 3169
SacI	GAGCTC	5 cut(s)	132, 140, 1604, 1968, 2447
SacII	CCGCGG	1 cut(s)	2065
SalI	GTCGAC	1 cut(s)	2559
SapI	GCTCTTC	3 cut(s)	145, 1787, 2908
SatI	GCNGC	5 cut(s)	326, 1377, 1806, 2586, 2646
Sau96I	GGNCC	6 cut(s)	286, 822, 923, 2338, 2681, 3202
ScaI	AGTACT	1 cut(s)	2699
SchI	GAGTC	1 cut(s)	3145
ScrFI	CCNGG	3 cut(s)	588, 619, 2419
SduI	GDGCHC	8 cut(s)	132, 140, 230, 1604, 1968, 2447, 3070, 3176
SfaNI	GCATC	9 cut(s)	169, 223, 739, 763, 1116, 1305, 2813, 3136, 3291
SfcI	CTRYAG	4 cut(s)	1761, 1803, 3131, 3290
Sfr303I	CCGCGG	1 cut(s)	2065
SgrBI	CCGCGG	1 cut(s)	2065
SinI	GGWCC	5 cut(s)	286, 822, 923, 2681, 3202
SmiMI	CAYNNNNRTG	3 cut(s)	16, 401, 3169
SmlI	CTYRAG	3 cut(s)	125, 1310, 3369
SmoI	CTYRAG	3 cut(s)	125, 1310, 3369
SpeI	ACTAGT	1 cut(s)	1669
SphI	GCATGC	1 cut(s)	2652
SsiI	CCGC	8 cut(s)	1376, 2062, 2064, 2261, 2570, 2638, 3262, 3303
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	7 cut(s)	1380, 1670, 1751, 2750, 2871, 2964, 2999
SstI	GAGCTC	5 cut(s)	132, 140, 1604, 1968, 2447
StyD4I	CCNGG	3 cut(s)	586, 617, 2417
StyI	CCWWGG	2 cut(s)	1417, 2889
TaaI	ACNGT	8 cut(s)	467, 669, 997, 1765, 2375, 2398, 2702, 2886
TaiI	ACGT	3 cut(s)	260, 1865, 1957
TaqI	TCGA	2 cut(s)	2560, 3139
TatI	WGTACW	5 cut(s)	168, 782, 1395, 1693, 2697
TauI	GCSGC	1 cut(s)	1379
TseFI	GTSAC	2 cut(s)	1672, 3294
TseI	GCWGC	4 cut(s)	325, 1805, 2585, 2645
Tsp45I	GTSAC	2 cut(s)	1672, 3294
TspDTI	ATGAA	8 cut(s)	516, 1152, 1320, 1578, 2031, 2760, 2811, 2895
TspGWI	ACGGA	4 cut(s)	871, 1025, 1238, 2232
Van91I	CCANNNNNTGG	2 cut(s)	524, 2186
Vha464I	CTTAAG	1 cut(s)	1310
VpaK11BI	GGWCC	5 cut(s)	286, 822, 923, 2681, 3202
VspI	ATTAAT	1 cut(s)	3101
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	7 cut(s)	208, 1094, 2144, 2467, 2506, 3079, 3152
XbaI	TCTAGA	1 cut(s)	1750
XceI	RCATGY	6 cut(s)	1373, 2001, 2493, 2652, 2930, 3172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3326
XmiI	GTMKAC	3 cut(s)	2160, 2560, 3127
XmnI	GAANNNNTTC	1 cut(s)	3042
XspI	CTAG	7 cut(s)	1380, 1670, 1751, 2750, 2871, 2964, 2999
ZrmI	AGTACT	1 cut(s)	2699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.