Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002130

Physical Location & Seq

Genomic Coordinates Forward (+)

10549755 .. 10551597

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCAGATATATCCGGATATGCAAAATGTAAACAAGAATCAGAACTCTGTCCCTAGATTTGCAAAGAGTCCAACACTCTTAGAGAAGACCTGTGATTTGCTCAGAAAATTTCCAGAATATTTTGATGTGGTCGTCAGTGTCGCAAGAAAAACTGATGTCGACATTGGGCGGATTTGTTCTCTGCTGCTGGAAGATCAACAGAGTTGTTTGAGGAATGCTTCCAACGTAGATGGTACCGGACTGCTGCCTGCTATATCCTTGTTCTATTCGATCTCTTCCAGCACGACATGCGGTTGTGGAAAGCATATAGCATCACCCTGCAGTCACATCCTGCATTTACTGAATCCCATGATCTATCGGGAGATTTGGACGAGAGACTTTCATCCACTGAAACTTTTGAAGAGAAATGAGGTTATAGTTGGACCTGTAAATCCTGTATCCTGCTTGGCAACAAATGGTGCTCGTTCAGTCGTTTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIC1

Protein Analysis

161

Amino Acids

17.82

Weight (kDa)

8.72

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61480 AT3G61480 AT5G28350 AT5G28350
fragaria_vesca	FvH4_5g28900 FvH4_5g28900 FvH4_5g28900
malus_domestica	MD01G1067900.v1.1 MD01G1068000.v1.1 MD11G1239500.v1.1
prunus_persica	Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1 Prupe.2G174200_v2.0.a1
pyrus_communis	pycom01g09700 pycom01g09710 pycom07g13050 pycom11g21100
rosa_chinensis	RchiOBHm_Chr1g0356891 RchiOBHm_Chr1g0356901 RchiOBHm_Chr1g0356911 RchiOBHm_Chr1g0356921 RchiOBHm_Chr1g0356931 RchiOBHm_Chr7g0221211
rosa_laevigata	RLG00000002173 RLG00000028071
rosa_multiflora	Rmu_sc0000324.1_g000014
rosa_roxburghii	Rroxscaffold_3G00238580 Rroxscaffold_4G00299210
rosa_rugosa	Rorug01G0251900 Rorug01G0252000 Rorug07G0201300
rosa_samantha	Rh1AG266600 Rh1AG266700 Rh1BG234000 Rh1CG250100 Rh1DG261500 Rh6DG315800 Rh7AG340100 Rh7BG331300 Rh7CG358100 Rh7DG338800 Rh7DG338900
rosa_wichuraiana	Rw1G023540 Rw7G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	2 cut(s)	169, 291
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	400
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	1 cut(s)	369
Aor13HI	TCCGGA	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	184, 244
ApoI	RAATTY	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
Asp718I	GGTACC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	171, 231
BccI	CCATC	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	448
BisI	GCNGC	2 cut(s)	185, 245
BlsI	GCNGC	2 cut(s)	186, 246
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	92
BsaWI	WCCGGW	2 cut(s)	13, 236
BseAI	TCCGGA	1 cut(s)	13
BseGI	GGATG	2 cut(s)	327, 382
BseMII	CTCAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	171, 231
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	14, 237
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	193, 270, 351
BspACI	CCGC	2 cut(s)	169, 291
BspCNI	CTCAG	1 cut(s)	114
BspEI	TCCGGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	233
BssMI	GATC	3 cut(s)	193, 270, 351
Bst6I	CTCTTC	2 cut(s)	280, 395
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	79, 101
BstF5I	GGATG	2 cut(s)	327, 382
BstKTI	GATC	3 cut(s)	196, 273, 354
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	3 cut(s)	193, 270, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	171, 231
BstV2I	GAAGAC	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	448
BtsCI	GGATG	2 cut(s)	327, 382
BtsIMutI	CAGTG	2 cut(s)	142, 386
Cac8I	GCNNGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	288, 349, 480
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	79, 101
DpnI	GATC	3 cut(s)	195, 272, 353
DpnII	GATC	3 cut(s)	193, 270, 351
Eam1104I	CTCTTC	2 cut(s)	280, 395
EarI	CTCTTC	2 cut(s)	280, 395
EciI	GGCGGA	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	422
FaeI	CATG	3 cut(s)	291, 352, 483
FaiI	YATR	9 cut(s)	10, 20, 254, 289, 306, 308, 350, 416, 481
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	287, 348, 479
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	185, 245
FokI	GGATG	2 cut(s)	314, 369
Fsp4HI	GCNGC	2 cut(s)	185, 245
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	2 cut(s)	185, 245
HapII	CCGG	2 cut(s)	14, 237
Hin1II	CATG	3 cut(s)	291, 352, 483
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	37, 67, 343
HpaII	CCGG	2 cut(s)	14, 237
HphI	GGTGA	1 cut(s)	306
Hpy166II	GTNNAC	2 cut(s)	31, 160
Hpy188I	TCNGA	2 cut(s)	42, 104
Hpy188III	TCNNGA	3 cut(s)	14, 113, 359
Hpy8I	GTNNAC	2 cut(s)	31, 160
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	4, 22, 62, 321, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	2 cut(s)	79, 101
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	291, 352, 483
Kpn2I	TCCGGA	1 cut(s)	13
KpnI	GGTACC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	193, 270, 351
Lsp1109I	GCAGC	2 cut(s)	171, 231
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	3 cut(s)	195, 272, 353
MboI	GATC	3 cut(s)	193, 270, 351
MboII	GAAGA	4 cut(s)	97, 203, 267, 412
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	3 cut(s)	95, 246, 400
MnlI	CCTC	2 cut(s)	204, 403
MroI	TCCGGA	1 cut(s)	13
MspI	CCGG	2 cut(s)	14, 237
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeII	GATC	3 cut(s)	193, 270, 351
NlaIII	CATG	3 cut(s)	291, 352, 483
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	291
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	37, 343
PkrI	GCNGC	2 cut(s)	186, 246
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	2 cut(s)	185, 245
Sau3AI	GATC	3 cut(s)	193, 270, 351
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	4 cut(s)	92, 228, 414, 427
SfaNI	GCATC	1 cut(s)	320
SfcI	CTRYAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	169, 291
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	159, 269
TasI	AATT	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	37, 343
TscAI	CASTG	2 cut(s)	142, 393
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	184, 244
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	2 cut(s)	142, 393
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.