Rh1BG234000

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002130
Physical Location & Seq
Forward (+)
35705575 .. 35709863
4289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG234000.1

Sequence Viewer

Length: 609 bp
ATGAATATGGATACAGGCTCTATGCTATTGAAGAACGATCGTTGGAGAGTATTCTTGGATTTTTATTCGATGCTGATGAACTTAAGATGGTTAAGATGTAACCTTCCAGTTTCTTATATCTCACAAAATTGTGGTGTATTTGGAGACATTACTCAGGAACAGAAGATTCAGAGCAAAGTTTTGTTATGGGTGAGGAAGATTGTTGTTGTCTGCAACTACATTGATTCTACTAACACATATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTACTTTGCCGAAACCAATCAGAGGAAAAATCAAATCTTATTGTGAAAAATTTCATGGTTAGATTATGGCCACCGCGGAATGCAGGAGGATTTCTTGCAGTTCTGATTGGATGTAGTTTAATGGAGCTTGAATTTGATTGTGAGCCAACACCTCAAGCTCAAACTATATTACATTGTCTTCTAAGGCACCTTATTCAGGGACAAAAGGGAGGAAGCTTTAAGGTTGGCCAATTATCAGCAGAAAAACCTCATTTCTCTCATTGTATGGAGTGGCTTCTGTTTACTGTATTTGATCGGACATATCCAGGCAAAGTGCTCTGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

202

Amino Acids

23.48

Weight (kDa)

8.57

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RIC1_2nd PF25440 46 - 102 4.3e-14 RIC1 second beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 468
AccII CGCG 1 cut(s) 358
AciI CCGC 2 cut(s) 356, 358
AcoI YGGCCR 2 cut(s) 350, 508
AcsI RAATTY 2 cut(s) 331, 413
AfiI CCNNNNNNNGG 2 cut(s) 304, 478
AflII CTTAAG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 31, 413
AjnI CCWGG 1 cut(s) 586
AluBI AGCT 4 cut(s) 279, 409, 440, 498
AluI AGCT 4 cut(s) 279, 409, 440, 498
Alw21I GWGCWC 2 cut(s) 281, 600
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 2 cut(s) 350, 508
ApoI RAATTY 2 cut(s) 331, 413
Asp700I GAANNNNTTC 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 202, 257
BalI TGGCCA 2 cut(s) 352, 510
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 2 cut(s) 281, 600
BccI CCATC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 588
BciVI GTATCC 1 cut(s) 4
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 82
BfuI GTATCC 1 cut(s) 4
Bme1390I CCNGG 1 cut(s) 588
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 356
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 478
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 2 cut(s) 304, 478
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 352, 510
BshNI GGYRCC 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 281, 600
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 304, 478
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 352, 510
Bsp1286I GDGCHC 2 cut(s) 281, 600
Bsp143I GATC 3 cut(s) 37, 271, 574
BspACI CCGC 2 cut(s) 356, 358
BspANI GGCC 2 cut(s) 352, 510
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 468
BspTI CTTAAG 1 cut(s) 82
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 3 cut(s) 37, 271, 574
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 1 cut(s) 568
BstAFI CTTAAG 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 153, 464
BstDSI CCRYGG 1 cut(s) 356
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 358
BstKTI GATC 3 cut(s) 40, 274, 577
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 3 cut(s) 37, 271, 574
BstMCI CGRYCG 1 cut(s) 40
BstNI CCWGG 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 586
BstUI CGCG 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 452
BsuI GTATCC 1 cut(s) 4
BsuRI GGCC 2 cut(s) 352, 510
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 398
Cfr42I CCGCGG 1 cut(s) 359
CviAII CATG 1 cut(s) 337
CviJI RGCY 9 cut(s) 18, 279, 352, 409, 427, 440, 498, 510, 556
CviKI_1 RGCY 9 cut(s) 18, 279, 352, 409, 427, 440, 498, 510, 556
DdeI CTNAG 2 cut(s) 153, 464
DpnI GATC 3 cut(s) 39, 273, 576
DpnII GATC 3 cut(s) 37, 271, 574
EaeI YGGCCR 2 cut(s) 350, 508
Ecl136II GAGCTC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 586
EcoRV GATATC 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 1 cut(s) 340
FaqI GGGAC 1 cut(s) 495
FatI CATG 1 cut(s) 336
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 271
FokI GGATG 1 cut(s) 405
FriOI GRGCYC 1 cut(s) 281
HaeIII GGCC 2 cut(s) 352, 510
Hin1II CATG 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 496
HinfI GANTC 2 cut(s) 166, 224
HphI GGTGA 2 cut(s) 202, 257
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 5 cut(s) 171, 276, 304, 387, 579
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 564
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4V TGCA 3 cut(s) 213, 365, 380
HpyF3I CTNAG 2 cut(s) 153, 464
Hsp92II CATG 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 271
KspI CCGCGG 1 cut(s) 359
Kzo9I GATC 3 cut(s) 37, 271, 574
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 6 cut(s) 120, 140, 351, 464, 573, 600
LweI GCATC 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 98
MalI GATC 3 cut(s) 39, 273, 576
MboI GATC 3 cut(s) 37, 271, 574
MboII GAAGA 4 cut(s) 43, 175, 208, 452
MhlI GDGCHC 2 cut(s) 281, 600
MlsI TGGCCA 2 cut(s) 352, 510
MluCI AATT 5 cut(s) 127, 242, 331, 413, 512
MluNI TGGCCA 2 cut(s) 352, 510
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 6 cut(s) 186, 298, 362, 444, 485, 540
Mox20I TGGCCA 2 cut(s) 352, 510
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 2 cut(s) 352, 510
MseI TTAA 5 cut(s) 83, 92, 401, 501, 607
Msp20I TGGCCA 2 cut(s) 352, 510
MspA1I CMGCKG 1 cut(s) 358
MspCI CTTAAG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 358
NdeI CATATG 1 cut(s) 238
NdeII GATC 3 cut(s) 37, 271, 574
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 470
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 2 cut(s) 166, 224
Ple19I CGATCG 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 586
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 1 cut(s) 470
PvuI CGATCG 1 cut(s) 40
SacI GAGCTC 1 cut(s) 281
SacII CCGCGG 1 cut(s) 359
SaqAI TTAA 5 cut(s) 83, 92, 401, 501, 607
Sau3AI GATC 3 cut(s) 37, 271, 574
ScrFI CCNGG 1 cut(s) 588
SduI GDGCHC 2 cut(s) 281, 600
SfaNI GCATC 1 cut(s) 60
Sfr303I CCGCGG 1 cut(s) 359
SgrBI CCGCGG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 82, 435
SmoI CTYRAG 2 cut(s) 82, 435
Sse9I AATT 5 cut(s) 127, 242, 331, 413, 512
SsiI CCGC 2 cut(s) 356, 358
SstI GAGCTC 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 586
TaaI ACNGT 1 cut(s) 568
TaqI TCGA 1 cut(s) 68
TasI AATT 5 cut(s) 127, 242, 331, 413, 512
TfiI GAWTC 2 cut(s) 166, 224
Tru1I TTAA 5 cut(s) 83, 92, 401, 501, 607
Tru9I TTAA 5 cut(s) 83, 92, 401, 501, 607
TspDTI ATGAA 4 cut(s) 17, 92, 255, 325
Vha464I CTTAAG 1 cut(s) 82
XagI CCTNNNNNAGG 1 cut(s) 476
XapI RAATTY 2 cut(s) 331, 413
XmnI GAANNNNTTC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.