FvH4_5g28900

Protein RIC1 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
19999751 .. 20009431
9681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28900.t1

Sequence Viewer

Length: 3372 bp
ATGTATATGGCATATGGATGGCCTCAGGTGATCCCACTGGAACAGGGTTTGTGCCCGTCTTCCCAGAAGATCATATATTTGAAGGTCATCAATGGCTTACTCCTGGTCGTCTCTCCCTCCCACCTTGAGCTCTGGAGCTGTTCGCAGCATAAAGTGAGACTCGGCAAGTACATGAGGGATGCCGATTCTCTCCACTCACAAGGCGAGAATTTGCAAGCAGTCTGGAGCCCTGACGCCAAATTCGTTGCTCTTCTTACGTCTTCTTTCTTTCTTCACCTTTTCAAGGTCCAGTTTTCTGAGAAAAAGATTCAATTAGGAGGAGGGAAGCAGCCCTCTGCTGTATATCTCGCTACTATATCTCCTCTTCTCACTGAGCAGGTGCCATTTGCACATAAGGACATCACACTGAGCAATATTGTAAGCGACAGCAAACACATGCTACTTGGACTTTCTGATGGATCACTTTACAGTATCTCATGGAAAGGGGAGTTCTATGGGAGTTATAAACTTGATCCAATTCCACGTGATGGCCCATTATCACATTCCTTGGATAATGGTGTTGCTACTAAAGGGGTTCCAGGAACTATTCCTGCCAATAATTGCGTCCCCAGGAACTCTGCTATTATTCAACTGGAGCTTTGTCTTCCACTTAGGTTATTGTTTGTTTTGTATTCTGATGGACAACTGGTGTCATGTTCTGTAAGTAAGAAAGGCTTAAAGCATCCTGAATCTATTAAAGCTGAGAAGAGGCTGGGGGATGGTGATGCTGTATGTACTTCAGTAGCTTCGGAGCAACAAATCCTTGCTGTTGGGACCAAAAGAGGGGTTGTGGAGTTATATGACTTCGCCGAATCTGCATCACTGATCCGATCCGTATCTCTGTATGACTGGGGATACTCAATGGAAGACACTGGACCTGTCAGTTGCATTGCATGGACGCCTGATAATTCTGCTTTTGCAGTTGGGTGGAAGTTAAGAGGACTTACAGTTTGGTCTGTCTCCGGTTGTCGTTTGATGTCAACAATCCGTCAAATAGGTTTAAGTTCAGTATCTTCTCCGGTGGTGAAGCCAGTCAATGAATGTAAATTTGAACCTTTGATGGGTGGCACCTCATTGATGCAGTGGGATGAATATGGATATAGACTCTATGCTATTGAAGAACGATCATTGGAGAGGATCCTTGGATTTTCCTTTGGTAAATGTTGCCTTAACAGAGGAGTTTCAGGCATGACATATGTCCGGCAAGTGATATATGGTGATGATCGGTTGCTTGTTGTTCAGTCTGAAGATACTGATGAACTTAAGATGCTACATCTTAACCTTCCAGTTTCTTATATCTCACAAAATTGGCCAGTTCAACATGTAGCGGCTAGCAAAGATGGAATGTACTTGGCAGTTGCTGGCCTTCATGGGTTAATCATATACGATATACGATTCAAGAAGTGGCGAGTGTTTGGAGACATTACTCAGGAACAGAAGATACAGTGCAAAGGTTTGTTATGGATGGGGAAGATTGTTGTCGTCTGCAACTACATTGATTCTACTAACACATATGAATTGCTTTTCTATCCAAGATATCACCTTGATCAGAGCTCACTTCTTTGCCGAAAGTCGTTGCTTGCAAAACCAATGGTCATGGATGTCTATCAAGATTATATACTAGTCACATATCGCCCATTTGATGTTCACATATTCCATGTGAAATTATTTGGTGAATTGACACCTTTCACTACTCCAGATCTAGAGCTTTCTACAGTACGAGAACTCTCAATTATGACTGCAAAGAGCCATCCTGCAGCAATGCGTTTTGTCCCAGATCAGCTTCCAAGAGAGCGCATTTCAGATAATCATATGTCTAACTCAGATCCTTTACTAAAAGAGCCTGCAAGGTGTTTAATATTGAGAGTAAATGGGGAGCTTTCACTTCTTGATTTGGATGATGGACGTGAAAGGGAGCTCACTGATTCTGTTGAATTATTTTGGGTTACATGTGGTCAGTCGGAGGAAAAATCAAATCTTATTGAGGAGGTTTCATGGTTAGATTATGGCCACCGTGGAATGCAGGTTTGGTATCCATCTCTGGGTGTTGACCCTTTTAAGCAGGAGGATTTCTTGCAGTTGGATCCGGAGCTTGAATTTGATCGTGAGGTATACCCTCTGGGACTTCTTCCACATGCTGGGGTTGTTGTTGGCGTTTCCCAGCGAATGTCATTCTCAGCCTGCACAGAGTTTCCATGTTTTGAGCCTACTCCTCAAGCTCAAACTATATTACATTGTCTTTTAAGGCACCTTATTCAGAGGGACAAAAGGGAGGAAGCTTTAAGGTTGGCCCAATTATCAGCTGAAAAACCTCATTTCTCTCACTGTATGGAGTGGCTACTGTTTACCGTATTTGAGGCAGACATATCCAGGCAAAGTGCAAACAAGAATCAGAGCTCTGTGCCTAAATATGCAAAGAATTCCTCTCTTTTAGAGAAGACATGTGATTTGCTCAGAAATTTTCCAGAGTATTTTGATGTGGTTGTCAGTGTTGCAAGAAAAACTGATGGTCGACATTGGGCTGATTTGTTCACTGCTGCTGGGAGATCAACAGAGTTGTTTGAGGAATGCTTCCAACGCAGATGGTACCGCACTGCTGCATGCTATATACTTGTTATTGCTAAGCTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTGCGTTTATTACAGGCAACACTGGACGAATCTTTATATGAGCTCGCTGGGGAGCTGGTGAGGTTCTTGCTGAGATCTGGAAGGGAATATGAACAAGCATCAACAGATACAGATAGACAAGCTCCATCATCTCCCAGATTCTTGGGTTATTTTGGTTTTCGTTCTAGTAATAGAAAACAGTCCTTGGATAAGAGCTCTTCATTCAAGGAGCAGAGTGCACATGTTGCTTCTGTGAAGAACATTTTAGAAAGCCATGCTAGCTATTTGATGTCGGGAAAAGAGCTTTCAAAGCTAGTTGCATTTGTGAAAGGCACTCAGTTCGATTTAGTGGAATATCTTCAGCGAGAGAGATTTGGATGTGCTCGTTTGGAGAATTTCGCTTCGGGACTTGAATTAATTGGACAAAAGCTCCAAATGAGTATACTGCAGAGCCGATTTGATGCAGAATTTCTTTTGGCACATATGTGCTCTGTCAAGTTCAAAGAGTGGATAGTGGTCCTTGCCACTCTTTTAAGACGATCTGAGGTTCTATTTGATCTCTTCCAGGATGATATGCGGTTGTGGAAAGCTTATAGCTTCACTCTGCAGTCACATCCCGCCTTTACTGAATACCATGATCTTCTTGGAGATTTGGAAGATCAACTTTCATCCATTGGAACTTCTGAAGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1124

Amino Acids

127.16

Weight (kDa)

6.1

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RIC1_2nd PF25440 418 - 751 3e-90 RIC1 second beta propeller domain
RIC1 PF07064 758 - 934 1.2e-48 RIC1 C-terminal alpha solenoid region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 2 cut(s) 367, 2053
Acc65I GGTACC 1 cut(s) 2625
AccB1I GGYRCC 4 cut(s) 379, 1106, 2286, 2625
AccB7I CCANNNNNTGG 2 cut(s) 527, 2177
AccI GTMKAC 3 cut(s) 2151, 2551, 3118
AccIII TCCGGA 1 cut(s) 2125
AciI CCGC 4 cut(s) 1367, 2629, 3253, 3294
AcoI YGGCCR 2 cut(s) 1349, 2047
AcsI RAATTY 8 cut(s) 208, 239, 1085, 2135, 2458, 2497, 3070, 3143
AcuI CTGAAG 3 cut(s) 762, 1305, 3020
AcvI CACGTG 1 cut(s) 524
AcyI GRCGYC 2 cut(s) 234, 938
AfaI GTAC 6 cut(s) 170, 775, 1388, 1758, 2627, 2690
AfiI CCNNNNNNNGG 6 cut(s) 283, 527, 822, 1100, 2081, 2177
AflII CTTAAG 1 cut(s) 1301
AflIII ACRYGT 4 cut(s) 1360, 1988, 2480, 2917
AhlI ACTAGT 1 cut(s) 1660
AjiI CACGTC 1 cut(s) 1946
AjnI CCWGG 5 cut(s) 102, 577, 608, 2408, 3240
AjuI GAANNNNNNNTTGG 2 cut(s) 2050, 2082
AleI CACNNNNGTG 1 cut(s) 3160
Alw21I GWGCWC 9 cut(s) 132, 1595, 1959, 2438, 2742, 2894, 2917, 3061, 3167
Alw26I GTCTC 4 cut(s) 115, 151, 1003, 1452
Alw44I GTGCAC 1 cut(s) 2913
AlwNI CAGNNNCTG 1 cut(s) 1400
Aor13HI TCCGGA 1 cut(s) 2125
AoxI GGCC 6 cut(s) 20, 529, 1349, 1402, 2047, 2328
ApaLI GTGCAC 1 cut(s) 2913
ApeKI GCWGC 5 cut(s) 145, 328, 1796, 2576, 2636
ApoI RAATTY 8 cut(s) 208, 239, 1085, 2135, 2458, 2497, 3070, 3143
ArsI GACNNNNNNTTYG 6 cut(s) 224, 256, 972, 1004, 2470, 2502
AseI ATTAAT 1 cut(s) 3092
Asp700I GAANNNNTTC 1 cut(s) 3033
Asp718I GGTACC 1 cut(s) 2625
AspLEI GCGC 1 cut(s) 1836
AspS9I GGNCC 7 cut(s) 286, 530, 813, 914, 2329, 2672, 3193
AsuHPI GGTGA 8 cut(s) 40, 266, 773, 1075, 1268, 1571, 1724, 2767
AsuNHI GCTAGC 2 cut(s) 1370, 2954
AvaII GGWCC 5 cut(s) 286, 813, 914, 2672, 3193
AxyI CCTNAGG 1 cut(s) 24
BaeGI GKGCMC 2 cut(s) 56, 2917
BalI TGGCCA 2 cut(s) 1351, 2049
BamHI GGATCC 2 cut(s) 1176, 2122
BanI GGYRCC 4 cut(s) 379, 1106, 2286, 2625
BanII GRGCYC 7 cut(s) 132, 230, 1595, 1959, 2438, 2742, 2894
BbrPI CACGTG 1 cut(s) 524
BbsI GAAGAC 5 cut(s) 51, 252, 635, 912, 2483
Bbv12I GWGCWC 9 cut(s) 132, 1595, 1959, 2438, 2742, 2894, 2917, 3061, 3167
BbvI GCAGC 5 cut(s) 157, 340, 1808, 2563, 2623
BcgI CGANNNNNNTGC 2 cut(s) 2998, 3032
BciT130I CCWGG 5 cut(s) 104, 579, 610, 2410, 3242
BciVI GTATCC 2 cut(s) 887, 2082
BclI TGATCA 1 cut(s) 1585
BcoDI GTCTC 4 cut(s) 115, 151, 1003, 1452
BcuI ACTAGT 1 cut(s) 1660
BfaI CTAG 6 cut(s) 1371, 1661, 1742, 2862, 2955, 2990
BfmI CTRYAG 4 cut(s) 1752, 1794, 3122, 3281
BfrI CTTAAG 1 cut(s) 1301
BfuAI ACCTGC 2 cut(s) 367, 2053
BfuI GTATCC 2 cut(s) 887, 2082
BglII AGATCT 2 cut(s) 1738, 2771
BisI GCNGC 6 cut(s) 146, 329, 1368, 1797, 2577, 2637
BlpI GCTNAGC 1 cut(s) 2661
BlsI GCNGC 6 cut(s) 147, 330, 1369, 1798, 2578, 2638
BmcAI AGTACT 1 cut(s) 2690
Bme1390I CCNGG 5 cut(s) 104, 579, 610, 2410, 3242
Bme18I GGWCC 5 cut(s) 286, 813, 914, 2672, 3193
BmgBI CACGTC 1 cut(s) 1946
BmgT120I GGNCC 7 cut(s) 286, 530, 813, 914, 2329, 2672, 3193
BmiI GGNNCC 9 cut(s) 227, 381, 576, 814, 1108, 1178, 2124, 2288, 2627
BmrFI CCNGG 5 cut(s) 104, 579, 610, 2410, 3242
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 8 cut(s) 169, 730, 754, 866, 1107, 1296, 2804, 3127
BmtI GCTAGC 2 cut(s) 1374, 2958
BmuI ACTGGG 1 cut(s) 898
BoxI GACNNNNGTC 1 cut(s) 1235
BpiI GAAGAC 5 cut(s) 51, 252, 635, 912, 2483
BpmI CTGGAG 4 cut(s) 154, 244, 653, 1719
Bpu1102I GCTNAGC 1 cut(s) 2661
BpuEI CTTGAG 2 cut(s) 146, 2238
BsaAI YACGTR 1 cut(s) 524
BsaBI GATNNNNATC 2 cut(s) 874, 1644
BsaHI GRCGYC 2 cut(s) 234, 938
BsaJI CCNNGG 5 cut(s) 546, 608, 1180, 2053, 2880
BsaWI WCCGGW 3 cut(s) 1001, 1057, 2125
BsaXI ACNNNNNCTCC 4 cut(s) 343, 373, 3090, 3120
Bsc4I CCNNNNNNNGG 6 cut(s) 283, 527, 822, 1100, 2081, 2177
Bse21I CCTNAGG 1 cut(s) 24
Bse3DI GCAATG 2 cut(s) 927, 1806
Bse8I GATNNNNATC 2 cut(s) 874, 1644
BseAI TCCGGA 1 cut(s) 2125
BseBI CCWGG 5 cut(s) 104, 579, 610, 2410, 3242
BseDI CCNNGG 5 cut(s) 546, 608, 1180, 2053, 2880
BseJI GATNNNNATC 2 cut(s) 874, 1644
BseLI CCNNNNNNNGG 6 cut(s) 283, 527, 822, 1100, 2081, 2177
BseMI GCAATG 2 cut(s) 927, 1806
BseRI GAGGAG 5 cut(s) 333, 351, 1230, 2039, 2241
BseSI GKGCMC 2 cut(s) 56, 2917
BseXI GCAGC 5 cut(s) 157, 340, 1808, 2563, 2623
BseYI CCCAGC 5 cut(s) 751, 2177, 2199, 2579, 2744
BsgI GTGCAG 1 cut(s) 2206
BshFI GGCC 6 cut(s) 22, 531, 1351, 1404, 2049, 2330
BshNI GGYRCC 4 cut(s) 379, 1106, 2286, 2625
BsiHKAI GWGCWC 9 cut(s) 132, 1595, 1959, 2438, 2742, 2894, 2917, 3061, 3167
BsiSI CCGG 4 cut(s) 1002, 1058, 1240, 2126
BslFI GGGAC 6 cut(s) 590, 826, 1796, 2175, 2315, 3096
BslI CCNNNNNNNGG 6 cut(s) 283, 527, 822, 1100, 2081, 2177
BsmAI GTCTC 4 cut(s) 115, 151, 1003, 1452
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 6 cut(s) 590, 826, 1796, 2175, 2315, 3096
BsmI GAATGC 2 cut(s) 2064, 2612
BsnI GGCC 6 cut(s) 22, 531, 1351, 1404, 2049, 2330
Bsp13I TCCGGA 1 cut(s) 2125
Bsp1720I GCTNAGC 1 cut(s) 2661
BspACI CCGC 4 cut(s) 1367, 2629, 3253, 3294
BspANI GGCC 6 cut(s) 22, 531, 1351, 1404, 2049, 2330
BspEI TCCGGA 1 cut(s) 2125
BspLI GGNNCC 9 cut(s) 227, 381, 576, 814, 1108, 1178, 2124, 2288, 2627
BspMAI CTGCAG 3 cut(s) 1798, 3126, 3285
BspMI ACCTGC 2 cut(s) 367, 2053
BspOI GCTAGC 2 cut(s) 1374, 2958
BspQI GCTCTTC 2 cut(s) 255, 2899
BspT107I GGYRCC 4 cut(s) 379, 1106, 2286, 2625
BspTI CTTAAG 1 cut(s) 1301
BsrDI GCAATG 2 cut(s) 927, 1806
BssECI CCNNGG 5 cut(s) 546, 608, 1180, 2053, 2880
BssNAI GTATAC 2 cut(s) 2152, 3119
BssNI GRCGYC 2 cut(s) 234, 938
BssT1I CCWWGG 3 cut(s) 546, 1180, 2880
Bst1107I GTATAC 2 cut(s) 2152, 3119
Bst2UI CCWGG 5 cut(s) 104, 579, 610, 2410, 3242
Bst6I CTCTTC 5 cut(s) 255, 369, 740, 2899, 3242
BstACI GRCGYC 2 cut(s) 234, 938
BstAFI CTTAAG 1 cut(s) 1301
BstAPI GCANNNNNTGC 1 cut(s) 2921
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 9 cut(s) 216, 1372, 1402, 1620, 1884, 2221, 2641, 2742, 2956
BstDSI CCRYGG 1 cut(s) 2053
BstENI CCTNNNNNAGG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 1836
BstMAI GTCTC 4 cut(s) 115, 151, 1003, 1452
BstMWI GCNNNNNNNGC 5 cut(s) 854, 2616, 2921, 2955, 2986
BstNI CCWGG 5 cut(s) 104, 579, 610, 2410, 3242
BstNSI RCATGY 7 cut(s) 439, 1364, 1992, 2177, 2484, 2643, 2921
BstPAI GACNNNNGTC 1 cut(s) 1235
BstSCI CCNGG 5 cut(s) 102, 577, 608, 2408, 3240
BstSFI CTRYAG 4 cut(s) 1752, 1794, 3122, 3281
BstSLI GKGCMC 2 cut(s) 56, 2917
BstV1I GCAGC 5 cut(s) 157, 340, 1808, 2563, 2623
BstV2I GAAGAC 5 cut(s) 51, 252, 635, 912, 2483
BstX2I RGATCY 5 cut(s) 1176, 1738, 1864, 2122, 2771
BstXI CCANNNNNNTGG 1 cut(s) 2839
BstYI RGATCY 5 cut(s) 1176, 1738, 1864, 2122, 2771
BstZ17I GTATAC 2 cut(s) 2152, 3119
Bsu36I CCTNAGG 1 cut(s) 24
BsuI GTATCC 2 cut(s) 887, 2082
BsuRI GGCC 6 cut(s) 22, 531, 1351, 1404, 2049, 2330
BtgI CCRYGG 1 cut(s) 2053
BtrI CACGTC 1 cut(s) 1946
BtsI GCAGTG 3 cut(s) 1127, 2571, 2631
BveI ACCTGC 2 cut(s) 367, 2053
Cac8I GCNNGC 9 cut(s) 216, 1372, 1402, 1620, 1884, 2221, 2641, 2742, 2956
CaiI CAGNNNCTG 1 cut(s) 1400
CfoI GCGC 1 cut(s) 1836
Cfr13I GGNCC 7 cut(s) 286, 530, 813, 914, 2329, 2672, 3193
CseI GACGC 3 cut(s) 242, 592, 946
Csp6I GTAC 6 cut(s) 169, 774, 1387, 1757, 2626, 2689
CviQI GTAC 6 cut(s) 169, 774, 1387, 1757, 2626, 2689
EaeI YGGCCR 2 cut(s) 1349, 2047
Eam1104I CTCTTC 5 cut(s) 255, 369, 740, 2899, 3242
EarI CTCTTC 5 cut(s) 255, 369, 740, 2899, 3242
Ecl136II GAGCTC 6 cut(s) 130, 1593, 1957, 2436, 2740, 2892
Eco130I CCWWGG 3 cut(s) 546, 1180, 2880
Eco24I GRGCYC 7 cut(s) 132, 230, 1595, 1959, 2438, 2742, 2894
Eco32I GATATC 1 cut(s) 1577
Eco47I GGWCC 5 cut(s) 286, 813, 914, 2672, 3193
Eco53kI GAGCTC 6 cut(s) 130, 1593, 1957, 2436, 2740, 2892
Eco57I CTGAAG 3 cut(s) 762, 1305, 3020
Eco72I CACGTG 1 cut(s) 524
Eco81I CCTNAGG 1 cut(s) 24
EcoICRI GAGCTC 6 cut(s) 130, 1593, 1957, 2436, 2740, 2892
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 2672
EcoRI GAATTC 1 cut(s) 2458
EcoRII CCWGG 5 cut(s) 102, 577, 608, 2408, 3240
EcoRV GATATC 1 cut(s) 1577
EcoT14I CCWWGG 3 cut(s) 546, 1180, 2880
EcoT38I GRGCYC 7 cut(s) 132, 230, 1595, 1959, 2438, 2742, 2894
ErhI CCWWGG 3 cut(s) 546, 1180, 2880
Esp3I CGTCTC 1 cut(s) 115
FalI AAGNNNNNCTT 4 cut(s) 698, 730, 3324, 3356
FaqI GGGAC 6 cut(s) 590, 826, 1796, 2175, 2315, 3096
FauI CCCGC 1 cut(s) 3301
FauNDI CATATG 5 cut(s) 13, 1234, 1552, 1851, 3159
FbaI TGATCA 1 cut(s) 1585
FblI GTMKAC 3 cut(s) 2151, 2551, 3118
Fnu4HI GCNGC 6 cut(s) 146, 329, 1368, 1797, 2577, 2637
FriOI GRGCYC 7 cut(s) 132, 230, 1595, 1959, 2438, 2742, 2894
Fsp4HI GCNGC 6 cut(s) 146, 329, 1368, 1797, 2577, 2637
FspBI CTAG 6 cut(s) 1371, 1661, 1742, 2862, 2955, 2990
GlaI GCGC 1 cut(s) 1835
GluI GCNGC 6 cut(s) 146, 329, 1368, 1797, 2577, 2637
GsaI CCCAGC 5 cut(s) 755, 2181, 2203, 2583, 2748
GsuI CTGGAG 4 cut(s) 154, 244, 653, 1719
HaeIII GGCC 6 cut(s) 22, 531, 1351, 1404, 2049, 2330
HapII CCGG 4 cut(s) 1002, 1058, 1240, 2126
HgaI GACGC 3 cut(s) 242, 592, 946
HhaI GCGC 1 cut(s) 1836
Hin1I GRCGYC 2 cut(s) 234, 938
Hin6I GCGC 1 cut(s) 1834
HinP1I GCGC 1 cut(s) 1834
HincII GTYRAC 3 cut(s) 1020, 2089, 2552
HindII GTYRAC 3 cut(s) 1020, 2089, 2552
HindIII AAGCTT 3 cut(s) 2316, 2663, 3264
HpaII CCGG 4 cut(s) 1002, 1058, 1240, 2126
HphI GGTGA 8 cut(s) 40, 266, 773, 1075, 1268, 1571, 1724, 2767
Hpy166II GTNNAC 9 cut(s) 1020, 1687, 2089, 2152, 2385, 2552, 2571, 2915, 3119
Hpy8I GTNNAC 9 cut(s) 1020, 1687, 2089, 2152, 2385, 2552, 2571, 2915, 3119
HpyAV CCTTC 5 cut(s) 76, 1331, 1415, 2663, 2772
HpyCH4IV ACGT 3 cut(s) 257, 523, 1945
HpyF10VI GCNNNNNNNGC 5 cut(s) 854, 2616, 2921, 2955, 2986
HpySE526I ACGT 3 cut(s) 257, 523, 1945
Hsp92I GRCGYC 2 cut(s) 234, 938
HspAI GCGC 1 cut(s) 1834
Kpn2I TCCGGA 1 cut(s) 2125
KpnI GGTACC 1 cut(s) 2629
Ksp22I TGATCA 1 cut(s) 1585
LguI GCTCTTC 2 cut(s) 255, 2899
Lsp1109I GCAGC 5 cut(s) 157, 340, 1808, 2563, 2623
LweI GCATC 8 cut(s) 169, 730, 754, 866, 1107, 1296, 2804, 3127
MaeI CTAG 6 cut(s) 1371, 1661, 1742, 2862, 2955, 2990
MaeII ACGT 3 cut(s) 257, 523, 1945
MaeIII GTNAC 3 cut(s) 1663, 1984, 3285
MflI RGATCY 5 cut(s) 1176, 1738, 1864, 2122, 2771
MlsI TGGCCA 2 cut(s) 1351, 2049
MluNI TGGCCA 2 cut(s) 1351, 2049
MlyI GAGTC 2 cut(s) 153, 1137
MmeI TCCRAC 3 cut(s) 1980, 2100, 2638
Mox20I TGGCCA 2 cut(s) 1351, 2049
MroI TCCGGA 1 cut(s) 2125
MroXI GAANNNNTTC 1 cut(s) 3033
MscI TGGCCA 2 cut(s) 1351, 2049
MslI CAYNNNNRTG 2 cut(s) 16, 3160
Msp20I TGGCCA 2 cut(s) 1351, 2049
MspA1I CMGCKG 1 cut(s) 2342
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 4 cut(s) 1002, 1058, 1240, 2126
MspR9I CCNGG 5 cut(s) 104, 579, 610, 2410, 3242
Mva1269I GAATGC 2 cut(s) 2064, 2612
MvaI CCWGG 5 cut(s) 104, 579, 610, 2410, 3242
MwoI GCNNNNNNNGC 5 cut(s) 854, 2616, 2921, 2955, 2986
NdeI CATATG 5 cut(s) 13, 1234, 1552, 1851, 3159
NheI GCTAGC 2 cut(s) 1370, 2954
NlaIV GGNNCC 9 cut(s) 227, 381, 576, 814, 1108, 1178, 2124, 2288, 2627
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 2 cut(s) 1663, 3285
NspI RCATGY 7 cut(s) 439, 1364, 1992, 2177, 2484, 2643, 2921
OliI CACNNNNGTG 1 cut(s) 3160
PaeI GCATGC 1 cut(s) 2643
PaqCI CACCTGC 1 cut(s) 367
PciI ACATGT 4 cut(s) 1360, 1988, 2480, 2917
PciSI GCTCTTC 2 cut(s) 255, 2899
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 2 cut(s) 2064, 2612
PdmI GAANNNNTTC 1 cut(s) 3033
PflMI CCANNNNNTGG 2 cut(s) 527, 2177
PfoI TCCNGGA 2 cut(s) 577, 3240
PkrI GCNGC 6 cut(s) 147, 330, 1369, 1798, 2578, 2638
PleI GAGTC 2 cut(s) 153, 1137
PmaCI CACGTG 1 cut(s) 524
PmlI CACGTG 1 cut(s) 524
PpsI GAGTC 2 cut(s) 153, 1137
Ppu21I YACGTR 1 cut(s) 524
PpuMI RGGWCCY 1 cut(s) 2672
PscI ACATGT 4 cut(s) 1360, 1988, 2480, 2917
PshAI GACNNNNGTC 1 cut(s) 1235
PshBI ATTAAT 1 cut(s) 3092
PsiI TTATAA 1 cut(s) 504
Psp124BI GAGCTC 6 cut(s) 132, 1595, 1959, 2438, 2742, 2894
Psp5II RGGWCCY 1 cut(s) 2672
Psp6I CCWGG 5 cut(s) 102, 577, 608, 2408, 3240
PspCI CACGTG 1 cut(s) 524
PspFI CCCAGC 5 cut(s) 751, 2177, 2199, 2579, 2744
PspGI CCWGG 5 cut(s) 102, 577, 608, 2408, 3240
PspN4I GGNNCC 9 cut(s) 227, 381, 576, 814, 1108, 1178, 2124, 2288, 2627
PspPI GGNCC 7 cut(s) 286, 530, 813, 914, 2329, 2672, 3193
PspPPI RGGWCCY 1 cut(s) 2672
PsrI GAACNNNNNNTAC 2 cut(s) 1464, 1496
PstI CTGCAG 3 cut(s) 1798, 3126, 3285
PstNI CAGNNNCTG 1 cut(s) 1400
PsuI RGATCY 5 cut(s) 1176, 1738, 1864, 2122, 2771
PvuII CAGCTG 1 cut(s) 2342
RsaI GTAC 6 cut(s) 170, 775, 1388, 1758, 2627, 2690
RsaNI GTAC 6 cut(s) 169, 774, 1387, 1757, 2626, 2689
RseI CAYNNNNRTG 2 cut(s) 16, 3160
SacI GAGCTC 6 cut(s) 132, 1595, 1959, 2438, 2742, 2894
SalI GTCGAC 1 cut(s) 2550
SapI GCTCTTC 2 cut(s) 255, 2899
SatI GCNGC 6 cut(s) 146, 329, 1368, 1797, 2577, 2637
Sau96I GGNCC 7 cut(s) 286, 530, 813, 914, 2329, 2672, 3193
ScaI AGTACT 1 cut(s) 2690
SchI GAGTC 2 cut(s) 153, 1137
ScrFI CCNGG 5 cut(s) 104, 579, 610, 2410, 3242
SfaNI GCATC 8 cut(s) 169, 730, 754, 866, 1107, 1296, 2804, 3127
SfcI CTRYAG 4 cut(s) 1752, 1794, 3122, 3281
SinI GGWCC 5 cut(s) 286, 813, 914, 2672, 3193
SmiMI CAYNNNNRTG 2 cut(s) 16, 3160
SmlI CTYRAG 3 cut(s) 125, 1301, 2253
SmoI CTYRAG 3 cut(s) 125, 1301, 2253
SpeI ACTAGT 1 cut(s) 1660
SphI GCATGC 1 cut(s) 2643
SsiI CCGC 4 cut(s) 1367, 2629, 3253, 3294
SspI AATATT 2 cut(s) 415, 1899
SspMI CTAG 6 cut(s) 1371, 1661, 1742, 2862, 2955, 2990
SstI GAGCTC 6 cut(s) 132, 1595, 1959, 2438, 2742, 2894
StyD4I CCNGG 5 cut(s) 102, 577, 608, 2408, 3240
StyI CCWWGG 3 cut(s) 546, 1180, 2880
TaiI ACGT 3 cut(s) 260, 526, 1948
TaqI TCGA 2 cut(s) 2551, 3018
TatI WGTACW 4 cut(s) 168, 773, 1386, 2688
TauI GCSGC 1 cut(s) 1370
TseFI GTSAC 2 cut(s) 1663, 3285
TseI GCWGC 5 cut(s) 145, 328, 1796, 2576, 2636
Tsp45I GTSAC 2 cut(s) 1663, 3285
TspDTI ATGAA 9 cut(s) 1092, 1143, 1311, 1397, 1569, 2022, 2802, 2886, 3333
TspGWI ACGGA 2 cut(s) 862, 1016
Van91I CCANNNNNTGG 2 cut(s) 527, 2177
Vha464I CTTAAG 1 cut(s) 1301
VneI GTGCAC 1 cut(s) 2913
VpaK11BI GGWCC 5 cut(s) 286, 813, 914, 2672, 3193
VspI ATTAAT 1 cut(s) 3092
XagI CCTNNNNNAGG 1 cut(s) 281
XapI RAATTY 8 cut(s) 208, 239, 1085, 2135, 2458, 2497, 3070, 3143
XbaI TCTAGA 1 cut(s) 1741
XceI RCATGY 7 cut(s) 439, 1364, 1992, 2177, 2484, 2643, 2921
XcmI CCANNNNNNNNNTGG 1 cut(s) 3317
XmiI GTMKAC 3 cut(s) 2151, 2551, 3118
XmnI GAANNNNTTC 1 cut(s) 3033
XspI CTAG 6 cut(s) 1371, 1661, 1742, 2862, 2955, 2990
ZrmI AGTACT 1 cut(s) 2690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.