Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Forward (+)

1440146 .. 1441863

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCGTCCTCATCCCTTTCCCCTGCTACTCAGCTTGGTTCTAGCAGAAGTGCTTTGATGGCGATGTCAAGTGGGTTGTTTGTGAAGCCAACGAAGATGAATCATCAAATGGTTAGAAAAGAGAAGATTGGATTGAGAATTTCTTGTCAAGCGTCGAGTATTCCAGCAGACAGAGTTCCAGATATGGAAAAGAGGAAGACTTTGAATCTTCTTCTTCTTGGGGCTCTTTCTCTACCTACTGGCTACATGCTTGTCCCTTACGCTACCTTCTTTGTTCCTCCTGGAACCGGAGGTGGAGGTGGTGGTACTCCAGCCAAGGATGCCCTTGGAAACGATGTAGTTGCAGCGGAATGGCTTAAGACTCATGGTCCCGGTGACCGAACCTTGACCCAAGGATTAAAGGGAGATCCGACTTACCTAGTTGTAGAGAACGACAAGACTCTAGCGACATACGGTATCAACGCAGTGTGCACTCATCTTGGATGTGTTGTGCCATGGAACAAAGCTGAGAACAAGTTTCTATGTCCTTGCCATGGATCCCAATACAACGCCCAAGGAAGAGTCGTTAGAGGTCCAGCCCCATTGTCGCTAGCGTTGGCTCACGCGGATATAGATGAAGCTGGGAAGGTTCTTTTTGTTCCATGGGTGGAAACTGACTTCAGGACTGGTGATGCTCCATGGTGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009055 GO:0009314 GO:0009416 GO:0009507 GO:0009512 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009767 GO:0009941 GO:0009987 GO:0010196 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0070069 GO:0071944 GO:0080167 GO:0098542 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

229

Amino Acids

24.37

Weight (kDa)

8.8

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TM_PetC	PF25471	56 - 103	2.6e-23	Iron-sulfur subunit PetC transmembrane anchor
Rieske	PF00355	133 - 195	9.3e-10	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	605
AciI	CCGC	2 cut(s)	347, 605
AclWI	GGATC	3 cut(s)	401, 531, 544
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	643
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	287, 533
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	205
AhdI	GACNNNNNGTC	1 cut(s)	366
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	3 cut(s)	34, 506, 620
AluI	AGCT	3 cut(s)	34, 506, 620
Alw21I	GWGCWC	1 cut(s)	473
Alw44I	GTGCAC	1 cut(s)	469
AlwI	GGATC	3 cut(s)	401, 531, 544
ApaLI	GTGCAC	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	368, 572
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	386, 680
AsuNHI	GCTAGC	1 cut(s)	589
AvaII	GGWCC	2 cut(s)	368, 572
BaeGI	GKGCMC	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	372
BfaI	CTAG	4 cut(s)	42, 419, 443, 590
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	282, 372
Bme18I	GGWCC	2 cut(s)	368, 572
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	368, 572
BmiI	GGNNCC	3 cut(s)	286, 370, 538
BmrFI	CCNGG	2 cut(s)	282, 372
BmsI	GCATC	2 cut(s)	310, 661
BmtI	GCTAGC	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 533
Bse1I	ACTGG	2 cut(s)	244, 670
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
BseGI	GGATG	3 cut(s)	11, 325, 488
BseLI	CCNNNNNNNGG	2 cut(s)	287, 533
BseMII	CTCAG	2 cut(s)	44, 498
BseNI	ACTGG	2 cut(s)	244, 670
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	288, 372
BslFI	GGGAC	2 cut(s)	239, 354
BslI	CCNNNNNNNGG	2 cut(s)	287, 533
BsmFI	GGGAC	2 cut(s)	239, 354
Bsp1286I	GDGCHC	2 cut(s)	226, 473
Bsp143I	GATC	2 cut(s)	406, 536
Bsp19I	CCATGG	4 cut(s)	494, 532, 641, 677
BspACI	CCGC	2 cut(s)	347, 605
BspCNI	CTCAG	2 cut(s)	43, 499
BspFNI	CGCG	1 cut(s)	605
BspLI	GGNNCC	3 cut(s)	286, 370, 538
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	3 cut(s)	401, 531, 544
BspTI	CTTAAG	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	244, 670
BssECI	CCNNGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
BssMI	GATC	2 cut(s)	406, 536
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	553
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	2 cut(s)	30, 507
BstDSI	CCRYGG	4 cut(s)	494, 532, 641, 677
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	11, 325, 488
BstFNI	CGCG	1 cut(s)	605
BstKTI	GATC	2 cut(s)	409, 539
BstMBI	GATC	2 cut(s)	406, 536
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 320
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	250
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	280, 370
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	406, 536
BstYI	RGATCY	2 cut(s)	406, 536
BtgI	CCRYGG	4 cut(s)	494, 532, 641, 677
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	11, 325, 488
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	368, 572
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	6 cut(s)	247, 365, 495, 533, 642, 678
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	2 cut(s)	30, 507
DpnI	GATC	2 cut(s)	408, 538
DpnII	GATC	2 cut(s)	406, 536
DriI	GACNNNNNGTC	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	553
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	553
Eco130I	CCWWGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	368, 572
Eco57I	CTGAAG	1 cut(s)	643
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
FaeI	CATG	6 cut(s)	250, 368, 498, 536, 645, 681
FaqI	GGGAC	2 cut(s)	239, 354
FatI	CATG	6 cut(s)	246, 364, 494, 532, 641, 677
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	332, 495
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	4 cut(s)	42, 419, 443, 590
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	294
HapII	CCGG	2 cut(s)	288, 372
HgaI	GACGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	250, 368, 498, 536, 645, 681
HinfI	GANTC	5 cut(s)	100, 205, 361, 439, 561
HpaII	CCGG	2 cut(s)	288, 372
HphI	GGTGA	2 cut(s)	386, 680
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	2 cut(s)	179, 661
Hpy8I	GTNNAC	1 cut(s)	471
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	277, 619
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	344, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 320
HpyF3I	CTNAG	2 cut(s)	30, 507
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	250, 368, 498, 536, 645, 681
Kzo9I	GATC	2 cut(s)	406, 536
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	310, 661
MaeI	CTAG	4 cut(s)	42, 419, 443, 590
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	2 cut(s)	408, 538
MboI	GATC	2 cut(s)	406, 536
MboII	GAAGA	7 cut(s)	106, 136, 200, 203, 206, 208, 570
MflI	RGATCY	2 cut(s)	406, 536
MhlI	GDGCHC	2 cut(s)	226, 473
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	3 cut(s)	355, 433, 570
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	6 cut(s)	19, 186, 284, 288, 290, 563
MseI	TTAA	3 cut(s)	357, 398, 688
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	2 cut(s)	288, 372
MspR9I	CCNGG	2 cut(s)	282, 372
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	59, 320
NciI	CCSGG	1 cut(s)	372
NcoI	CCATGG	4 cut(s)	494, 532, 641, 677
NdeII	GATC	2 cut(s)	406, 536
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	6 cut(s)	250, 368, 498, 536, 645, 681
NlaIV	GGNNCC	3 cut(s)	286, 370, 538
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	100, 205
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	3 cut(s)	355, 433, 569
PpsI	GAGTC	3 cut(s)	355, 433, 569
Psp6I	CCWGG	1 cut(s)	280
PspEI	GGTNACC	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	286, 370, 538
PspPI	GGNCC	2 cut(s)	368, 572
PsuI	RGATCY	2 cut(s)	406, 536
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	357, 398, 688
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	406, 536
Sau96I	GGNCC	2 cut(s)	368, 572
SchI	GAGTC	3 cut(s)	355, 433, 570
ScrFI	CCNGG	2 cut(s)	282, 372
SduI	GDGCHC	2 cut(s)	226, 473
SfaNI	GCATC	2 cut(s)	310, 661
SinI	GGWCC	2 cut(s)	368, 572
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	347, 605
SspMI	CTAG	4 cut(s)	42, 419, 443, 590
StyD4I	CCNGG	2 cut(s)	280, 370
StyI	CCWWGG	8 cut(s)	315, 325, 391, 494, 532, 553, 641, 677
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	1 cut(s)	155
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	100, 205
Tru1I	TTAA	3 cut(s)	357, 398, 688
Tru9I	TTAA	3 cut(s)	357, 398, 688
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	113, 630
TspRI	CASTG	1 cut(s)	471
Vha464I	CTTAAG	1 cut(s)	356
VneI	GTGCAC	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	368, 572
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	4 cut(s)	42, 419, 443, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.