Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

7141561 .. 7146634

Gene Structure 5074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1098300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTTCCTCTACTCTATGTCCTGCTACCACTTCCCAGCTGTGTTCCAGCAAGAGTGCAATGTTCTCATCAGCAAAGGGCTTTGCTGTGAAGAGCAAGAGGACACAGATGATGGGAAAGGGAAAGGGAATGAGAGTCACTTGCCAGGCAGGCAGTATTGCTGCTGATAGAGTGCCAGACATGGAGAAGAGGAAGCTTATGAATCTGCTTCTTCTGGGTACTATCTCACTCCCCAGTGGCTTCATGTTGGTTCCCTATGCCACTTTCTTTGCTCCACCTGGCTCCGGTGCCGGCTCTGGTGGTCAAGTTGCCAAGGATGCTCTTGGAAACGACGTGCTTGCAGCTGAATGGCTTAAGACTCATGGCCCTGGTGACAGGACTCTCACACAAGGATTGAAGGGTGATCCTACATACCTTGTTGTGGAGAAAGATAAAACTCTTGCCACATATGCAATCAATGCCGTCTGCACTCACCTTGGCTGTGTCGTGCCATTTAACAGGGCGGAGAACAAGTTCATATGCCCCTGCCATGGATCCCAGTACAATGACCAAGGAAGGGTTGTCAGAGGACCTGCTCCTTTGTCTCTGGCGTTGGCTCATTGTGATATTGATGATGGGAAGGTCGTGTTTGTTCCATGGGTTGAAACCGATTTCAGAACCGGCGAAGATCCATGGTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

228

Amino Acids

24.18

Weight (kDa)

8.77

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TM_PetC	PF25471	55 - 102	5e-23	Iron-sulfur subunit PetC transmembrane anchor
Rieske	PF00355	133 - 194	2.2e-11	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	4 cut(s)	398, 528, 541, 662
AfaI	GTAC	2 cut(s)	220, 542
AfiI	CCNNNNNNNGG	4 cut(s)	284, 421, 530, 556
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	397, 644
AjiI	CACGTC	1 cut(s)	334
AjnI	CCWGG	3 cut(s)	144, 277, 367
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	3 cut(s)	40, 196, 344
AluI	AGCT	3 cut(s)	40, 196, 344
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	4 cut(s)	398, 528, 541, 662
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	2 cut(s)	161, 341
Asp700I	GAANNNNTTC	1 cut(s)	512
AspS9I	GGNCC	2 cut(s)	365, 569
AsuHPI	GGTGA	3 cut(s)	383, 413, 464
AvaII	GGWCC	1 cut(s)	569
BamHI	GGATCC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	148, 353
BccI	CCATC	2 cut(s)	106, 608
BceAI	ACGGC	1 cut(s)	446
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	3 cut(s)	146, 279, 369
BcoDI	GTCTC	1 cut(s)	588
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	580
BglI	GCCNNNNNGGC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	162, 342
BlsI	GCNGC	2 cut(s)	163, 343
Bme1390I	CCNGG	3 cut(s)	146, 279, 369
Bme18I	GGWCC	1 cut(s)	569
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	365, 569
BmiI	GGNNCC	4 cut(s)	252, 283, 289, 535
BmrFI	CCNGG	3 cut(s)	146, 279, 369
BmrI	ACTGGG	2 cut(s)	228, 532
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	2 cut(s)	228, 532
BsaJI	CCNNGG	7 cut(s)	312, 367, 475, 529, 550, 635, 671
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 421, 530, 556
Bse118I	RCCGGY	2 cut(s)	290, 659
Bse1I	ACTGG	2 cut(s)	234, 538
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	3 cut(s)	146, 279, 369
BseDI	CCNNGG	7 cut(s)	312, 367, 475, 529, 550, 635, 671
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	4 cut(s)	284, 421, 530, 556
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	234, 538
BseXI	GCAGC	2 cut(s)	148, 353
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	285, 291, 660
BslI	CCNNNNNNNGG	4 cut(s)	284, 421, 530, 556
BsmAI	GTCTC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	403, 533, 667
Bsp19I	CCATGG	3 cut(s)	529, 635, 671
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	252, 283, 289, 535
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	4 cut(s)	398, 528, 541, 662
BspQI	GCTCTTC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	290, 659
BsrI	ACTGG	2 cut(s)	234, 538
BssAI	RCCGGY	2 cut(s)	290, 659
BssECI	CCNNGG	7 cut(s)	312, 367, 475, 529, 550, 635, 671
BssMI	GATC	3 cut(s)	403, 533, 667
BssT1I	CCWWGG	6 cut(s)	312, 475, 529, 550, 635, 671
Bst2UI	CCWGG	3 cut(s)	146, 279, 369
Bst6I	CTCTTC	2 cut(s)	86, 182
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	151, 292, 339
BstDSI	CCRYGG	3 cut(s)	529, 635, 671
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	3 cut(s)	406, 536, 670
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	3 cut(s)	403, 533, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 317, 449, 458
BstNI	CCWGG	3 cut(s)	146, 279, 369
BstSCI	CCNGG	3 cut(s)	144, 277, 367
BstV1I	GCAGC	2 cut(s)	148, 353
BstX2I	RGATCY	2 cut(s)	533, 667
BstYI	RGATCY	2 cut(s)	533, 667
BsuRI	GGCC	1 cut(s)	366
BtgI	CCRYGG	3 cut(s)	529, 635, 671
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	3 cut(s)	151, 292, 339
Cfr10I	RCCGGY	2 cut(s)	290, 659
Cfr13I	GGNCC	2 cut(s)	365, 569
Csp6I	GTAC	2 cut(s)	219, 541
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	6 cut(s)	181, 244, 362, 530, 636, 672
CviQI	GTAC	2 cut(s)	219, 541
DpnI	GATC	3 cut(s)	405, 535, 669
DpnII	GATC	3 cut(s)	403, 533, 667
Eam1104I	CTCTTC	2 cut(s)	86, 182
EarI	CTCTTC	2 cut(s)	86, 182
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	6 cut(s)	312, 475, 529, 550, 635, 671
Eco47I	GGWCC	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	144, 277, 367
EcoT14I	CCWWGG	6 cut(s)	312, 475, 529, 550, 635, 671
ErhI	CCWWGG	6 cut(s)	312, 475, 529, 550, 635, 671
FaeI	CATG	6 cut(s)	184, 247, 365, 533, 639, 675
FatI	CATG	6 cut(s)	180, 243, 361, 529, 635, 671
FauNDI	CATATG	2 cut(s)	448, 518
Fnu4HI	GCNGC	2 cut(s)	162, 342
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	162, 342
GluI	GCNGC	2 cut(s)	162, 342
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	3 cut(s)	285, 291, 660
Hin1II	CATG	6 cut(s)	184, 247, 365, 533, 639, 675
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	135, 202, 358, 379
HpaII	CCGG	3 cut(s)	285, 291, 660
HphI	GGTGA	3 cut(s)	383, 413, 464
Hpy188I	TCNGA	2 cut(s)	566, 656
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	391, 549, 613
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	59, 341, 452, 468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 317, 449, 458
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	6 cut(s)	184, 247, 365, 533, 639, 675
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	403, 533, 667
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	3 cut(s)	277, 287, 580
Lsp1109I	GCAGC	2 cut(s)	148, 353
LweI	GCATC	1 cut(s)	307
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	136, 371
MalI	GATC	3 cut(s)	405, 535, 669
MboI	GATC	3 cut(s)	403, 533, 667
MboII	GAAGA	4 cut(s)	103, 199, 203, 677
MflI	RGATCY	2 cut(s)	533, 667
MlyI	GAGTC	3 cut(s)	144, 352, 373
MnlI	CCTC	4 cut(s)	19, 93, 183, 560
MroNI	GCCGGC	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	3 cut(s)	354, 495, 682
MspA1I	CMGCKG	2 cut(s)	40, 344
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	3 cut(s)	285, 291, 660
MspR9I	CCNGG	3 cut(s)	146, 279, 369
MvaI	CCWGG	3 cut(s)	146, 279, 369
MwoI	GCNNNNNNNGC	4 cut(s)	150, 317, 449, 458
NaeI	GCCGGC	1 cut(s)	292
NcoI	CCATGG	3 cut(s)	529, 635, 671
NdeI	CATATG	2 cut(s)	448, 518
NdeII	GATC	3 cut(s)	403, 533, 667
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	6 cut(s)	184, 247, 365, 533, 639, 675
NlaIV	GGNNCC	4 cut(s)	252, 283, 289, 535
NmuCI	GTSAC	2 cut(s)	136, 371
PciSI	GCTCTTC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	163, 343
PleI	GAGTC	3 cut(s)	143, 352, 373
PpsI	GAGTC	3 cut(s)	143, 352, 373
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	3 cut(s)	144, 277, 367
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	3 cut(s)	144, 277, 367
PspN4I	GGNNCC	4 cut(s)	252, 283, 289, 535
PspPI	GGNCC	2 cut(s)	365, 569
PspPPI	RGGWCCY	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	533, 667
PvuII	CAGCTG	2 cut(s)	40, 344
RsaI	GTAC	2 cut(s)	220, 542
RsaNI	GTAC	2 cut(s)	219, 541
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	354, 495, 682
SatI	GCNGC	2 cut(s)	162, 342
Sau3AI	GATC	3 cut(s)	403, 533, 667
Sau96I	GGNCC	2 cut(s)	365, 569
SchI	GAGTC	3 cut(s)	144, 352, 373
ScrFI	CCNGG	3 cut(s)	146, 279, 369
SetI	ASST	9 cut(s)	42, 198, 280, 336, 346, 417, 477, 574, 624
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SsiI	CCGC	1 cut(s)	503
StyD4I	CCNGG	3 cut(s)	144, 277, 367
StyI	CCWWGG	6 cut(s)	312, 475, 529, 550, 635, 671
TaiI	ACGT	1 cut(s)	336
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	354, 495, 682
Tru9I	TTAA	3 cut(s)	354, 495, 682
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	136, 371
TseI	GCWGC	2 cut(s)	161, 341
Tsp45I	GTSAC	2 cut(s)	136, 371
TspDTI	ATGAA	3 cut(s)	215, 232, 505
TspRI	CASTG	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.