Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

28537401 .. 28537683

Gene Structure 283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1189200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGATCCGTACAATGACCAAGGAAGGGTTGTCAGAGGACCTGCTCCTTTGTCTCTGGCGTTGGCTCATGCCGATATTGATGACGGGAAGGTGTTTGTTCCATGGGTTGAAACCGATTTCAGAACCGGGGAAGCACCATGGTGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009055 GO:0009314 GO:0009416 GO:0009507 GO:0009512 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009767 GO:0009941 GO:0009987 GO:0010196 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0070069 GO:0071944 GO:0080167 GO:0098542 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

50

Amino Acids

5.48

Weight (kDa)

4.4

Isoelectric Point (pI)

9.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	110
AleI	CACNNNNGTG	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	4 cut(s)	19, 101, 126, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
BseDI	CCNNGG	4 cut(s)	19, 101, 126, 137
BseLI	CCNNNNNNNGG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	2 cut(s)	101, 137
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	4 cut(s)	19, 101, 126, 137
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	3 cut(s)	19, 101, 137
BstDSI	CCRYGG	2 cut(s)	101, 137
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtgI	CCRYGG	2 cut(s)	101, 137
BveI	ACCTGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	68, 102, 138
CviJI	RGCY	1 cut(s)	65
CviKI_1	RGCY	1 cut(s)	65
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco130I	CCWWGG	3 cut(s)	19, 101, 137
Eco47I	GGWCC	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	38
EcoT14I	CCWWGG	3 cut(s)	19, 101, 137
ErhI	CCWWGG	3 cut(s)	19, 101, 137
FaeI	CATG	3 cut(s)	71, 105, 141
FaiI	YATR	3 cut(s)	69, 103, 139
FatI	CATG	3 cut(s)	67, 101, 137
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	3 cut(s)	71, 105, 141
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	35, 122
HpyAV	CCTTC	2 cut(s)	18, 82
Hsp92II	CATG	3 cut(s)	71, 105, 141
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	3 cut(s)	41, 54, 139
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MnlI	CCTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	148
MslI	CAYNNNNRTG	1 cut(s)	139
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	127
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	2 cut(s)	101, 137
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	71, 105, 141
NlaIV	GGNNCC	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	38
PspPPI	RGGWCCY	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	2 cut(s)	43, 93
SgeI	CNNG	8 cut(s)	32, 53, 68, 80, 97, 114, 138, 139
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	3 cut(s)	19, 101, 137
Tru1I	TTAA	1 cut(s)	148
Tru9I	TTAA	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.