Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434711.1

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 672

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434711.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 370 bp

atgagcagcaacacagagagttcggagcctcctgaccttgagaggcagcagcagcgtgacgggagcgctgaggtggttacctcaattcccgattcttctggctttcagaaccacatgctccctccgccgctaccaccgaatccactgctaattcgtccaaggaggcataatagaagagcacaggccctgtctctgatgcccaagaggacccagatgatgggaaagggaaaaggaatgagaatcacatgccaggccgcaattccagctgataatgtccctgacatgggtaagaggaagcttatgaatttgcttattctaacgaatctcacttccctctggtttcctatgccactttctttgctccacctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

123

Amino Acids

13.76

Weight (kDa)

10.47

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	3 cut(s)	125, 128, 255
AcsI	RAATTY	1 cut(s)	304
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	3 cut(s)	217, 283, 284
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	266, 298
AluI	AGCT	2 cut(s)	266, 298
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	2 cut(s)	183, 252
ApeKI	GCWGC	4 cut(s)	6, 46, 49, 52
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	184, 207
AvaII	GGWCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	18, 58, 61, 64
BccI	CCATC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	2 cut(s)	251, 368
BcoDI	GTCTC	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	6 cut(s)	7, 47, 50, 53, 128, 255
BlsI	GCNGC	6 cut(s)	8, 48, 51, 54, 129, 256
Bme1390I	CCNGG	2 cut(s)	251, 368
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	184, 207
BmiI	GGNNCC	2 cut(s)	27, 209
BmrFI	CCNGG	2 cut(s)	251, 368
BmsI	GCATC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 283, 284
BseBI	CCWGG	2 cut(s)	251, 368
BseDI	CCNNGG	1 cut(s)	158
BseLI	CCNNNNNNNGG	3 cut(s)	217, 283, 284
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	18, 58, 61, 64
BshFI	GGCC	2 cut(s)	185, 254
BsiHKAI	GWGCWC	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	217, 283, 284
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	185, 254
Bsp1286I	GDGCHC	1 cut(s)	181
BspACI	CCGC	3 cut(s)	125, 128, 255
BspANI	GGCC	2 cut(s)	185, 254
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	27, 209
BspQI	GCTCTTC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	251, 368
Bst6I	CTCTTC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	69
BstEII	GGTNACC	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 124, 263
BstNI	CCWGG	2 cut(s)	251, 368
BstNSI	RCATGY	2 cut(s)	118, 249
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	18, 58, 61, 64
BsuRI	GGCC	2 cut(s)	185, 254
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	184, 207
CspCI	CAANNNNNGTGG	1 cut(s)	339
CviAII	CATG	3 cut(s)	115, 246, 283
CviJI	RGCY	6 cut(s)	28, 102, 185, 254, 266, 298
CviKI_1	RGCY	6 cut(s)	28, 102, 185, 254, 266, 298
DdeI	CTNAG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	76
EcoO109I	RGGNCCY	2 cut(s)	184, 207
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	3 cut(s)	118, 249, 286
FaiI	YATR	6 cut(s)	116, 168, 247, 284, 302, 347
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	114, 245, 282
Fnu4HI	GCNGC	6 cut(s)	7, 47, 50, 53, 128, 255
Fsp4HI	GCNGC	6 cut(s)	7, 47, 50, 53, 128, 255
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	6 cut(s)	7, 47, 50, 53, 128, 255
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	185, 254
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	118, 249, 286
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	92, 139, 240, 322
Hpy188I	TCNGA	3 cut(s)	25, 108, 195
Hpy188III	TCNNGA	2 cut(s)	32, 89
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 124, 263
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	118, 249, 286
HspAI	GCGC	1 cut(s)	66
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	4 cut(s)	25, 63, 123, 366
Lsp1109I	GCAGC	4 cut(s)	18, 58, 61, 64
LweI	GCATC	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	56, 76
MboII	GAAGA	2 cut(s)	87, 186
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	4 cut(s)	84, 150, 258, 304
MnlI	CCTC	9 cut(s)	36, 39, 64, 91, 132, 156, 198, 285, 344
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	251, 368
MvaI	CCWGG	2 cut(s)	251, 368
MwoI	GCNNNNNNNGC	3 cut(s)	52, 124, 263
NlaIII	CATG	3 cut(s)	118, 249, 286
NlaIV	GGNNCC	2 cut(s)	27, 209
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	2 cut(s)	118, 249
PciSI	GCTCTTC	1 cut(s)	169
PfeI	GAWTC	4 cut(s)	92, 139, 240, 322
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	8, 48, 51, 54, 129, 256
PpuMI	RGGWCCY	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	249
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	27, 209
PspPI	GGNCC	2 cut(s)	184, 207
PspPPI	RGGWCCY	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	169
SatI	GCNGC	6 cut(s)	7, 47, 50, 53, 128, 255
Sau96I	GGNCC	2 cut(s)	184, 207
ScrFI	CCNGG	2 cut(s)	251, 368
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	6 cut(s)	39, 75, 83, 268, 300, 369
SfaNI	GCATC	1 cut(s)	186
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	4 cut(s)	84, 150, 258, 304
SsiI	CCGC	3 cut(s)	125, 128, 255
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	158
TasI	AATT	4 cut(s)	84, 150, 258, 304
TauI	GCSGC	2 cut(s)	130, 257
TfiI	GAWTC	4 cut(s)	92, 139, 240, 322
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	4 cut(s)	6, 46, 49, 52
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	304
XceI	RCATGY	2 cut(s)	118, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.