Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

21461314 .. 21469029

Gene Structure 7716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAGCCGGGAGAGGAAGGAATTGAAGGACTTGAAGGTAATTTTGGGGGGGGGGGTAATTGGTGGATTGGGAATCCATGGAAGTGTTTTTGGGGGAGAAAAGGAGGAGATGGGAGCTCGTGCTGGAAATGGTGGTCAAGTTGCCAAAGATGCTCTAGGAAATGATGTAATTGCAGCAGAATGGCTTAAGACCCATGGGCCTGATAATGGAAGCAGTTTTGTAGATAATGACTTAAGTGAGGCTGACCCCGAGGTGCGTGCTATTATTGACAAGGAGAAAGAGCGGCAGTTCAAAAGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

100

Amino Acids

10.62

Weight (kDa)

5.15

Isoelectric Point (pI)

16.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	283
AciI	CCGC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflII	CTTAAG	2 cut(s)	185, 232
AgsI	TTSAA	3 cut(s)	25, 34, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	1 cut(s)	155
BfrI	CTTAAG	2 cut(s)	185, 232
BisI	GCNGC	2 cut(s)	174, 284
BlsI	GCNGC	2 cut(s)	175, 285
Bme1390I	CCNGG	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	76, 193, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	76, 193, 249
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	206
BsnI	GGCC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp19I	CCATGG	2 cut(s)	76, 193
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	199
BspTI	CTTAAG	2 cut(s)	185, 232
BsrBI	CCGCTC	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	76, 193, 249
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	76, 193
Bst2BI	CACGAG	1 cut(s)	117
BstAFI	CTTAAG	2 cut(s)	185, 232
BstC8I	GCNNGC	1 cut(s)	258
BstDSI	CCRYGG	2 cut(s)	76, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	199
BtgI	CCRYGG	2 cut(s)	76, 193
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	197
CviAII	CATG	2 cut(s)	77, 194
CviJI	RGCY	6 cut(s)	6, 116, 184, 199, 242, 297
CviKI_1	RGCY	6 cut(s)	6, 116, 184, 199, 242, 297
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	76, 193
Eco24I	GRGCYC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	76, 193
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	2 cut(s)	76, 193
FaeI	CATG	2 cut(s)	80, 197
FaiI	YATR	2 cut(s)	78, 195
FatI	CATG	2 cut(s)	76, 193
Fnu4HI	GCNGC	2 cut(s)	174, 284
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	174, 284
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	174, 284
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	7
Hin1II	CATG	2 cut(s)	80, 197
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	10, 19, 28
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	80, 197
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	3 cut(s)	20, 108, 213
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	155
MbiI	CCGCTC	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	4 cut(s)	20, 39, 57, 168
MnlI	CCTC	4 cut(s)	6, 97, 232, 244
MseI	TTAA	2 cut(s)	186, 233
MslI	CAYNNNNRTG	1 cut(s)	81
MspCI	CTTAAG	2 cut(s)	185, 232
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	8
NcoI	CCATGG	2 cut(s)	76, 193
NlaIII	CATG	2 cut(s)	80, 197
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	175, 285
Psp124BI	GAGCTC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	186, 233
SatI	GCNGC	2 cut(s)	174, 284
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	3 cut(s)	39, 118, 255
SfaNI	GCATC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	185, 232
SmoI	CTYRAG	2 cut(s)	185, 232
Sse9I	AATT	4 cut(s)	20, 39, 57, 168
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	76, 193
TasI	AATT	4 cut(s)	20, 39, 57, 168
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	186, 233
Tru9I	TTAA	2 cut(s)	186, 233
TseI	GCWGC	1 cut(s)	173
Vha464I	CTTAAG	2 cut(s)	185, 232
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.