Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Forward (+)

71593058 .. 71594441

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG538500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTGCCTCTACTCTATCTTCTGCTACCACTTCACAGCTATGCTCCAGCAAGAGTGCTATGTTCTCTTCAGCACAGGCCCTGTCTGTGATGCCCAGGAGGACCCAGATGATGGGAAAGGGAAAGGGAATGAGAATCACATGCCAGGCAGCAATTCCAGCTGATAATGTCCCTGACATGGGTAAGAGGAAGCTTATGAATTTGCTTCTTCTGGGTGCTATCTCACTTCCCTCTGGTTTCATGCTGGGTGATCCTACCTACCTTGTTGTGGAGAAAGACAGAACTCTTGCCACATATGGAATCAATGCTGTATGCACTCACCTTGGTTGTGTCGTGCCATTCAACACCGCCGAGAACAAGTTCATCTGCCCATGCCATGGATCCCAGTACAATGACCAAGGAAGGGTTGTCAGGGGACCTGCACCTCTGTCTCTGGCTTTGGCTCATGCTGATATTGATGAAGGCAAGGTAATATTTGTTCCTTGGGTCGAAACCGATTTCAGAACCGGTGAGGATCCATGGTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

176

Amino Acids

18.94

Weight (kDa)

8.24

Isoelectric Point (pI)

25.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TM_PetC	PF25471	54 - 83	2.3e-12	Iron-sulfur subunit PetC transmembrane anchor
Rieske	PF00355	82 - 143	3.3e-10	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	427
AccB7I	CCANNNNNTGG	2 cut(s)	112, 377
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	5 cut(s)	245, 375, 388, 509, 522
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 268, 377, 403
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	95, 144
AluBI	AGCT	3 cut(s)	40, 161, 193
AluI	AGCT	3 cut(s)	40, 161, 193
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	5 cut(s)	245, 375, 388, 509, 522
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	5, 149
ApoI	RAATTY	1 cut(s)	199
AsiGI	ACCGGT	1 cut(s)	506
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	79, 102, 416
AsuHPI	GGTGA	3 cut(s)	260, 311, 521
AvaII	GGWCC	2 cut(s)	102, 416
BamHI	GGATCC	2 cut(s)	380, 514
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	97, 146
BcoDI	GTCTC	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	427
BisI	GCNGC	2 cut(s)	6, 150
BlsI	GCNGC	2 cut(s)	7, 151
Bme1390I	CCNGG	2 cut(s)	97, 146
Bme18I	GGWCC	2 cut(s)	102, 416
BmgT120I	GGNCC	3 cut(s)	79, 102, 416
BmiI	GGNNCC	4 cut(s)	104, 382, 417, 516
BmrFI	CCNGG	2 cut(s)	97, 146
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	31
BsaJI	CCNNGG	6 cut(s)	95, 322, 376, 397, 482, 518
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 268, 377, 403
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	97, 146
BseDI	CCNNGG	6 cut(s)	95, 322, 376, 397, 482, 518
BseLI	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 268, 377, 403
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	80
BshTI	ACCGGT	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	2 cut(s)	155, 429
BslI	CCNNNNNNNGG	6 cut(s)	112, 178, 179, 268, 377, 403
BsmAI	GTCTC	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	155, 429
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	250, 380, 514
Bsp19I	CCATGG	2 cut(s)	376, 518
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	104, 382, 417, 516
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	5 cut(s)	245, 375, 388, 509, 522
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	6 cut(s)	95, 322, 376, 397, 482, 518
BssMI	GATC	3 cut(s)	250, 380, 514
BssT1I	CCWWGG	5 cut(s)	322, 376, 397, 482, 518
Bst2UI	CCWGG	2 cut(s)	97, 146
Bst6I	CTCTTC	1 cut(s)	73
BstDSI	CCRYGG	2 cut(s)	376, 518
BstKTI	GATC	3 cut(s)	253, 383, 517
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	3 cut(s)	250, 380, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	2 cut(s)	97, 146
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	95, 144
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	380, 514
BstYI	RGATCY	2 cut(s)	380, 514
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	2 cut(s)	376, 518
BveI	ACCTGC	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	3 cut(s)	79, 102, 416
Csp6I	GTAC	1 cut(s)	388
CspAI	ACCGGT	1 cut(s)	506
CviAII	CATG	7 cut(s)	141, 178, 241, 372, 377, 446, 519
CviJI	RGCY	8 cut(s)	5, 40, 80, 161, 193, 437, 443, 527
CviKI_1	RGCY	8 cut(s)	5, 40, 80, 161, 193, 437, 443, 527
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	3 cut(s)	252, 382, 516
DpnII	GATC	3 cut(s)	250, 380, 514
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	5 cut(s)	322, 376, 397, 482, 518
Eco47I	GGWCC	2 cut(s)	102, 416
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	3 cut(s)	79, 102, 416
EcoRII	CCWGG	2 cut(s)	95, 144
EcoT14I	CCWWGG	5 cut(s)	322, 376, 397, 482, 518
ErhI	CCWWGG	5 cut(s)	322, 376, 397, 482, 518
FaeI	CATG	7 cut(s)	144, 181, 244, 375, 380, 449, 522
FaqI	GGGAC	2 cut(s)	155, 429
FatI	CATG	7 cut(s)	140, 177, 240, 371, 376, 445, 518
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	6, 150
Fsp4HI	GCNGC	2 cut(s)	6, 150
GluI	GCNGC	2 cut(s)	6, 150
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	507
Hin1II	CATG	7 cut(s)	144, 181, 244, 375, 380, 449, 522
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	135, 300
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	3 cut(s)	260, 311, 521
Hpy188I	TCNGA	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	396, 455
HpyCH4V	TGCA	2 cut(s)	315, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	7 cut(s)	144, 181, 244, 375, 380, 449, 522
Kzo9I	GATC	3 cut(s)	250, 380, 514
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	81
MalI	GATC	3 cut(s)	252, 382, 516
MboI	GATC	3 cut(s)	250, 380, 514
MboII	GAAGA	3 cut(s)	12, 60, 200
MflI	RGATCY	2 cut(s)	380, 514
MluCI	AATT	2 cut(s)	153, 199
MnlI	CCTC	6 cut(s)	19, 93, 180, 241, 435, 505
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	529
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	2 cut(s)	97, 146
MvaI	CCWGG	2 cut(s)	97, 146
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	2 cut(s)	376, 518
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	3 cut(s)	250, 380, 514
NlaIII	CATG	7 cut(s)	144, 181, 244, 375, 380, 449, 522
NlaIV	GGNNCC	4 cut(s)	104, 382, 417, 516
NmeAIII	GCCGAG	1 cut(s)	376
NspI	RCATGY	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	135, 300
PflMI	CCANNNNNTGG	2 cut(s)	112, 377
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	2 cut(s)	7, 151
PpuMI	RGGWCCY	2 cut(s)	102, 416
Psp5II	RGGWCCY	2 cut(s)	102, 416
Psp6I	CCWGG	2 cut(s)	95, 144
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	95, 144
PspN4I	GGNNCC	4 cut(s)	104, 382, 417, 516
PspPI	GGNCC	3 cut(s)	79, 102, 416
PspPPI	RGGWCCY	2 cut(s)	102, 416
PsrI	GAACNNNNNNTAC	2 cut(s)	462, 494
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	380, 514
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	2 cut(s)	6, 150
Sau3AI	GATC	3 cut(s)	250, 380, 514
Sau96I	GGNCC	3 cut(s)	79, 102, 416
ScrFI	CCNGG	2 cut(s)	97, 146
SetI	ASST	9 cut(s)	42, 163, 195, 260, 264, 324, 421, 427, 471
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	2 cut(s)	102, 416
SmiMI	CAYNNNNRTG	1 cut(s)	40
Sse9I	AATT	2 cut(s)	153, 199
SsiI	CCGC	1 cut(s)	348
SspI	AATATT	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	95, 144
StyI	CCWWGG	5 cut(s)	322, 376, 397, 482, 518
TaqI	TCGA	1 cut(s)	489
TasI	AATT	2 cut(s)	153, 199
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	135, 300
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TseI	GCWGC	2 cut(s)	5, 149
TspDTI	ATGAA	4 cut(s)	212, 229, 352, 474
Van91I	CCANNNNNTGG	2 cut(s)	112, 377
VpaK11BI	GGWCC	2 cut(s)	102, 416
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.