Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

1668307 .. 1670441

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02210.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTTCCTTAACTCTCTCTCCTGCAACCACTTCCCAGCTATGTTCCAGCAAGAGTGCAATGTTCTCATCAGCAAATGGCTTTGCTGTGAACAGCAAGAGAACACAGATGATGGGAAGGGGAAAGGGAAAGGGAATGAGAGTCACTTGCCAGGCAGGCAGTATTGCTGCTGATAGAGTGCCAGACATGGAGAAGAGGAAGCTTATGAATCTGCTTCTTCTAGGTGCTATCTCACTTCCCACTGGCTTCATGTTGGTTCCCTATGCCACTTTCTTTGCTCCACCTGGCTCCGGTGCCGGCGCTGGTGGTCAAGTTGCCAAGGATGCTCTTGGAAACGACGTGCTTGCAGCTGAATGGCTTAAGACTCATGGACCTGGTGACAGGACTCTCACACAAGGATTGAAGGGTGATCCTACATACCTTGTTGTGGAGAAAGATAAAACTCTTGCCACATATGCAATCAATGCCGTCTGCACTCACCTTGGCTGTGTCGTGCCATTTAACAAGGCGGAGAACAAGTTCATATGCTCCTGCCATGGATCCCAGTACAATGACCAAGGAAGAGTTGTCAGAGGACCTGCTCCTTTGTCTCTGGCGTTGGCTCATTGTGATATTGATGATGGGAAGGTCGTGTTTGTTCCATGGGTTGAAACCGATTTCAGAACCGGCGAAGATCCATGGTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

230

Amino Acids

24.3

Weight (kDa)

8.67

Isoelectric Point (pI)

23.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	293
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	4 cut(s)	404, 534, 547, 668
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	290, 427
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	403, 650
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	3 cut(s)	150, 283, 373
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AluBI	AGCT	3 cut(s)	40, 202, 350
AluI	AGCT	3 cut(s)	40, 202, 350
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	4 cut(s)	404, 534, 547, 668
ApeKI	GCWGC	2 cut(s)	167, 347
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	371, 575
AsuHPI	GGTGA	3 cut(s)	389, 419, 470
AvaII	GGWCC	2 cut(s)	371, 575
BamHI	GGATCC	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	154, 359
BccI	CCATC	2 cut(s)	106, 614
BceAI	ACGGC	1 cut(s)	452
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	3 cut(s)	152, 285, 375
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	168, 348
BlsI	GCNGC	2 cut(s)	169, 349
Bme1390I	CCNGG	3 cut(s)	152, 285, 375
Bme18I	GGWCC	2 cut(s)	371, 575
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	371, 575
BmiI	GGNNCC	4 cut(s)	258, 289, 295, 541
BmrFI	CCNGG	3 cut(s)	152, 285, 375
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	538
BsaJI	CCNNGG	6 cut(s)	318, 481, 535, 556, 641, 677
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 427
Bse118I	RCCGGY	2 cut(s)	296, 665
Bse1I	ACTGG	2 cut(s)	247, 544
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	3 cut(s)	152, 285, 375
BseDI	CCNNGG	6 cut(s)	318, 481, 535, 556, 641, 677
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	290, 427
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	247, 544
BseXI	GCAGC	2 cut(s)	154, 359
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	291, 297, 666
BslI	CCNNNNNNNGG	2 cut(s)	290, 427
BsmAI	GTCTC	1 cut(s)	594
Bsp143I	GATC	3 cut(s)	409, 539, 673
Bsp19I	CCATGG	3 cut(s)	535, 641, 677
BspACI	CCGC	1 cut(s)	509
BspLI	GGNNCC	4 cut(s)	258, 289, 295, 541
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	4 cut(s)	404, 534, 547, 668
BspT107I	GGYRCC	1 cut(s)	293
BspTI	CTTAAG	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	296, 665
BsrI	ACTGG	2 cut(s)	247, 544
BssAI	RCCGGY	2 cut(s)	296, 665
BssECI	CCNNGG	6 cut(s)	318, 481, 535, 556, 641, 677
BssMI	GATC	3 cut(s)	409, 539, 673
BssT1I	CCWWGG	6 cut(s)	318, 481, 535, 556, 641, 677
Bst2UI	CCWGG	3 cut(s)	152, 285, 375
Bst6I	CTCTTC	2 cut(s)	188, 556
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	157, 298, 345
BstDSI	CCRYGG	3 cut(s)	535, 641, 677
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	3 cut(s)	412, 542, 676
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	3 cut(s)	409, 539, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 323, 455, 464
BstNI	CCWGG	3 cut(s)	152, 285, 375
BstSCI	CCNGG	3 cut(s)	150, 283, 373
BstV1I	GCAGC	2 cut(s)	154, 359
BstX2I	RGATCY	2 cut(s)	539, 673
BstYI	RGATCY	2 cut(s)	539, 673
BtgI	CCRYGG	3 cut(s)	535, 641, 677
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	3 cut(s)	157, 298, 345
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	2 cut(s)	296, 665
Cfr13I	GGNCC	2 cut(s)	371, 575
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	547
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	6 cut(s)	187, 250, 368, 536, 642, 678
CviQI	GTAC	1 cut(s)	547
DpnI	GATC	3 cut(s)	411, 541, 675
DpnII	GATC	3 cut(s)	409, 539, 673
Eam1104I	CTCTTC	2 cut(s)	188, 556
EarI	CTCTTC	2 cut(s)	188, 556
EciI	GGCGGA	1 cut(s)	524
Eco130I	CCWWGG	6 cut(s)	318, 481, 535, 556, 641, 677
Eco47I	GGWCC	2 cut(s)	371, 575
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	150, 283, 373
EcoT14I	CCWWGG	6 cut(s)	318, 481, 535, 556, 641, 677
ErhI	CCWWGG	6 cut(s)	318, 481, 535, 556, 641, 677
FaeI	CATG	6 cut(s)	190, 253, 371, 539, 645, 681
FatI	CATG	6 cut(s)	186, 249, 367, 535, 641, 677
FauNDI	CATATG	2 cut(s)	454, 524
Fnu4HI	GCNGC	2 cut(s)	168, 348
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	2 cut(s)	168, 348
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	168, 348
GsaI	CCCAGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	303
HapII	CCGG	3 cut(s)	291, 297, 666
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	6 cut(s)	190, 253, 371, 539, 645, 681
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	4 cut(s)	141, 208, 364, 385
HpaII	CCGG	3 cut(s)	291, 297, 666
HphI	GGTGA	3 cut(s)	389, 419, 470
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	572, 662
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	3 cut(s)	111, 397, 619
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	5 cut(s)	26, 59, 347, 458, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 323, 455, 464
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	6 cut(s)	190, 253, 371, 539, 645, 681
HspAI	GCGC	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	409, 539, 673
LmnI	GCTCC	4 cut(s)	283, 293, 533, 586
Lsp1109I	GCAGC	2 cut(s)	154, 359
LweI	GCATC	1 cut(s)	313
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	142, 377
MalI	GATC	3 cut(s)	411, 541, 675
MboI	GATC	3 cut(s)	409, 539, 673
MboII	GAAGA	4 cut(s)	205, 209, 573, 683
MflI	RGATCY	2 cut(s)	539, 673
MlyI	GAGTC	3 cut(s)	150, 358, 379
MnlI	CCTC	2 cut(s)	189, 566
MroNI	GCCGGC	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	4 cut(s)	11, 360, 501, 688
MspA1I	CMGCKG	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	3 cut(s)	291, 297, 666
MspR9I	CCNGG	3 cut(s)	152, 285, 375
MvaI	CCWGG	3 cut(s)	152, 285, 375
MwoI	GCNNNNNNNGC	4 cut(s)	156, 323, 455, 464
NaeI	GCCGGC	1 cut(s)	298
NcoI	CCATGG	3 cut(s)	535, 641, 677
NdeI	CATATG	2 cut(s)	454, 524
NdeII	GATC	3 cut(s)	409, 539, 673
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	6 cut(s)	190, 253, 371, 539, 645, 681
NlaIV	GGNNCC	4 cut(s)	258, 289, 295, 541
NmuCI	GTSAC	2 cut(s)	142, 377
PdiI	GCCGGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	169, 349
PleI	GAGTC	3 cut(s)	149, 358, 379
PpsI	GAGTC	3 cut(s)	149, 358, 379
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	3 cut(s)	150, 283, 373
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	3 cut(s)	150, 283, 373
PspN4I	GGNNCC	4 cut(s)	258, 289, 295, 541
PspPI	GGNCC	2 cut(s)	371, 575
PspPPI	RGGWCCY	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	539, 673
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SaqAI	TTAA	4 cut(s)	11, 360, 501, 688
SatI	GCNGC	2 cut(s)	168, 348
Sau3AI	GATC	3 cut(s)	409, 539, 673
Sau96I	GGNCC	2 cut(s)	371, 575
SchI	GAGTC	3 cut(s)	150, 358, 379
ScrFI	CCNGG	3 cut(s)	152, 285, 375
SexAI	ACCWGGT	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	2 cut(s)	371, 575
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SsiI	CCGC	1 cut(s)	509
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	3 cut(s)	150, 283, 373
StyI	CCWWGG	6 cut(s)	318, 481, 535, 556, 641, 677
TaiI	ACGT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	4 cut(s)	11, 360, 501, 688
Tru9I	TTAA	4 cut(s)	11, 360, 501, 688
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	142, 377
TseI	GCWGC	2 cut(s)	167, 347
Tsp45I	GTSAC	2 cut(s)	142, 377
TspDTI	ATGAA	3 cut(s)	221, 238, 511
TspRI	CASTG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	371, 575
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.