Rh5AG266600

Belongs to the membrane-bound acyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003668
Physical Location & Seq
Forward (+)
35123398 .. 35126984
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG266600.1

Sequence Viewer

Length: 525 bp
ATGCTGAAGAAGAGAGGGAGAGAGAGGCATCACAACCTGGATCCATTTTTGGCCGACAACGATGGCACCTCTGTGGCCTCCAAGAAGCGAACCAACTCTGGTGTTGGAAGTGGTGGTCAAGTTGCCAAGGATGCTCTAGGAAACGATGTAATTGCAGCAAAATGGATTAAGAACCATGGCCGTGGTGACAGGACTTTCACACAAAGATTGAAGAAACATACTCAACTTTGCAATACGTGTAGAGCCGGGAAAACTTGTTACCAACTTTTACAGGAGAGAGGTGTCCAGAGCGACAAGTTTGCCTTTATTACATTCCTTTCTTATCTGGCATATGCACCTCTTTATCTTGCTGGGCCAATTCTAAGCTTCAATGCCTTTGCTTCACAGCTGGATATTCCTCAAAATAACTATTCAGTTAGAGACACTACATGGTACGGTTTGCGTTGGGTATTCAGTCTCCTTCTGATGGAACTAATGACACATCTCTTGTACTACAATGCCTTTGCAATCAGGTGCGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBOAT

Protein Analysis

174

Amino Acids

19.7

Weight (kDa)

9.72

Isoelectric Point (pI)

23.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT PF03062 87 - 168 6.7e-08 MBOAT, membrane-bound O-acyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AclWI GGATC 2 cut(s) 35, 48
AcoI YGGCCR 2 cut(s) 51, 178
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 2 cut(s) 434, 491
AfiI CCNNNNNNNGG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 2 cut(s) 211, 370
AjnI CCWGG 1 cut(s) 36
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 366, 388
AluI AGCT 2 cut(s) 366, 388
Alw26I GTCTC 2 cut(s) 414, 461
AlwI GGATC 2 cut(s) 35, 48
AoxI GGCC 4 cut(s) 51, 75, 178, 353
ApeKI GCWGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 197
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 56, 460
BceAI ACGGC 1 cut(s) 165
BcgI CGANNNNNNTGC 4 cut(s) 134, 168, 281, 315
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 414, 461
BfaI CTAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 38, 247
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 42, 67
BmrFI CCNGG 2 cut(s) 38, 247
BmsI GCATC 2 cut(s) 37, 121
BpuMI CCSGG 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 126, 175, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 126, 175, 181
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 4 cut(s) 53, 77, 180, 355
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 2 cut(s) 414, 461
BsnI GGCC 4 cut(s) 53, 77, 180, 355
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 175
BspANI GGCC 4 cut(s) 53, 77, 180, 355
BspLI GGNNCC 2 cut(s) 42, 67
BspPI GGATC 2 cut(s) 35, 48
BspT107I GGYRCC 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 126, 175, 181
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 2 cut(s) 126, 175
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 437
Bst6I CTCTTC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 362
BstDSI CCRYGG 2 cut(s) 175, 181
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 2 cut(s) 414, 461
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 36, 245
BstV1I GCAGC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 4 cut(s) 53, 77, 180, 355
BtgI CCRYGG 2 cut(s) 175, 181
BtsCI GGATG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 2 cut(s) 433, 490
CviAII CATG 2 cut(s) 176, 429
CviJI RGCY 7 cut(s) 53, 77, 180, 245, 355, 366, 388
CviKI_1 RGCY 7 cut(s) 53, 77, 180, 245, 355, 366, 388
CviQI GTAC 2 cut(s) 433, 490
DdeI CTNAG 1 cut(s) 362
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 51, 178
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco130I CCWWGG 2 cut(s) 126, 175
Eco57I CTGAAG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 2 cut(s) 126, 175
ErhI CCWWGG 2 cut(s) 126, 175
FaeI CATG 2 cut(s) 179, 432
FaiI YATR 5 cut(s) 177, 219, 331, 333, 430
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FatI CATG 2 cut(s) 175, 428
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 354
HaeIII GGCC 4 cut(s) 53, 77, 180, 355
HapII CCGG 1 cut(s) 246
Hin1II CATG 2 cut(s) 179, 432
HindIII AAGCTT 1 cut(s) 364
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 465
Hpy188III TCNNGA 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 155, 231, 335, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 2 cut(s) 179, 432
Kzo9I GATC 1 cut(s) 40
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 2 cut(s) 37, 121
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 185, 257
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 3 cut(s) 19, 22, 223
MflI RGATCY 1 cut(s) 40
MluCI AATT 2 cut(s) 150, 357
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 7 cut(s) 8, 18, 79, 88, 272, 348, 408
MseI TTAA 2 cut(s) 168, 523
MslI CAYNNNNRTG 2 cut(s) 71, 180
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 38, 247
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 247
NcoI CCATGG 1 cut(s) 175
NdeI CATATG 1 cut(s) 331
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 179, 432
NlaIV GGNNCC 2 cut(s) 42, 67
NmuCI GTSAC 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 42, 67
PspPI GGNCC 1 cut(s) 353
PsuI RGATCY 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 2 cut(s) 434, 491
RsaNI GTAC 2 cut(s) 433, 490
RseI CAYNNNNRTG 2 cut(s) 71, 180
SaqAI TTAA 2 cut(s) 168, 523
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 353
ScrFI CCNGG 2 cut(s) 38, 247
SetI ASST 8 cut(s) 39, 71, 239, 283, 340, 368, 390, 515
SfaNI GCATC 2 cut(s) 37, 121
SmiMI CAYNNNNRTG 2 cut(s) 71, 180
Sse9I AATT 2 cut(s) 150, 357
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 36, 245
StyI CCWWGG 2 cut(s) 126, 175
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 1 cut(s) 239
TasI AATT 2 cut(s) 150, 357
TatI WGTACW 1 cut(s) 489
Tru1I TTAA 2 cut(s) 168, 523
Tru9I TTAA 2 cut(s) 168, 523
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 185
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.