Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Forward (+)

270810 .. 271222

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgccgaagaagagaaggagagagaggtatcataacccggagccatttcgggccgacgacgatggcgcctctgccttgtctctgatgcccaggaggacccagatgataggaaagggtaaaggaatgagaatcacataccaggccgcaattccagctgataatgtccctgacatgggtaagaggaagcttatgaatctgcttcttctaatgaatctcacttccctctggcttcctatgccactttctttactccacctaggtgagtttgaatcattggttcctttgtattccctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

98

Amino Acids

11.22

Weight (kDa)

10.08

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	172, 173
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	89, 138
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	155, 187
AluI	AGCT	2 cut(s)	155, 187
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	51, 141
AspA2I	CCTAGG	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	51, 96
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	96
AvrII	CCTAGG	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	65
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	91, 140
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	1 cut(s)	144
BlnI	CCTAGG	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	3 cut(s)	38, 91, 140
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	51, 96
BmiI	GGNNCC	4 cut(s)	42, 67, 98, 279
BmrFI	CCNGG	3 cut(s)	38, 91, 140
BmsI	GCATC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	89, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 173
BseBI	CCWGG	2 cut(s)	91, 140
BseDI	CCNNGG	2 cut(s)	89, 256
BseLI	CCNNNNNNNGG	2 cut(s)	172, 173
BshFI	GGCC	2 cut(s)	53, 143
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	172, 173
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	53, 143
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	53, 143
BspLI	GGNNCC	4 cut(s)	42, 67, 98, 279
BspT107I	GGYRCC	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	89, 256
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	91, 140
Bst6I	CTCTTC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 235
BstNI	CCWGG	2 cut(s)	91, 140
BstSCI	CCNGG	3 cut(s)	36, 89, 138
BsuRI	GGCC	2 cut(s)	53, 143
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	51, 96
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	6 cut(s)	43, 53, 143, 155, 187, 229
CviKI_1	RGCY	6 cut(s)	43, 53, 143, 155, 187, 229
DinI	GGCGCC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	89, 138
EcoT14I	CCWWGG	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	175
FaiI	YATR	5 cut(s)	33, 136, 173, 191, 236
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	53, 143
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	4 cut(s)	129, 193, 211, 269
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	84
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 235
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	66
KasI	GGCGCC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	9 cut(s)	51, 76, 103, 113, 125, 152, 165, 180, 211
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	257
MboII	GAAGA	3 cut(s)	19, 22, 194
MluCI	AATT	1 cut(s)	147
Mly113I	GGCGCC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	18, 79, 87, 174, 233
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	38, 91, 140
MvaI	CCWGG	2 cut(s)	91, 140
MwoI	GCNNNNNNNGC	2 cut(s)	152, 235
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	38
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	4 cut(s)	42, 67, 98, 279
OliI	CACNNNNGTG	1 cut(s)	258
PfeI	GAWTC	4 cut(s)	129, 193, 211, 269
PkrI	GCNGC	1 cut(s)	145
PluTI	GGCGCC	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	89, 138
PspGI	CCWGG	2 cut(s)	89, 138
PspN4I	GGNNCC	4 cut(s)	42, 67, 98, 279
PspPI	GGNCC	2 cut(s)	51, 96
PspPPI	RGGWCCY	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	1 cut(s)	144
Sau96I	GGNCC	2 cut(s)	51, 96
ScrFI	CCNGG	3 cut(s)	38, 91, 140
SetI	ASST	5 cut(s)	29, 157, 189, 258, 262
SfaNI	GCATC	1 cut(s)	75
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	144
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	36, 89, 138
StyI	CCWWGG	1 cut(s)	256
TasI	AATT	1 cut(s)	147
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	4 cut(s)	129, 193, 211, 269
TspDTI	ATGAA	2 cut(s)	206, 224
VpaK11BI	GGWCC	1 cut(s)	96
XmaJI	CCTAGG	1 cut(s)	256
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.