Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006558.1

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

5348 .. 9912

Gene Structure 4565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006558.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgagcagcaacacagagagttcggagcctcctgaccttgagaggcagcagcagcgtgacggcagcgctgaggtggttacctcaattcccgattcttctggctttcagaaccacatgctccctccgccgctaccaccgaatccactgctaattcgtccaaggaggcataatagaagagcacaggccctgtctctgatgcccaagaggacccagatgatgggaaagggaaaaggaatgagaatcacatgccaggccgcaattccagctgataatgtccctgacatgggtaagaggaagcttatgaatttgcttattctaacgaatctcacttccctctggtttcctatgccactttctttgctccacctggaaagattccaattggaacaagctcgtgataagttatcggatgataaccaaggattatttttatgctctggtgttggaagtggtggtcaagttgccaaggatgctctaggaaacgatgtaattgcagcaaaatggattaagaaccatggcagtggtgacaggactttcacacaaagattgaaggtggtgatagaactgttaggagatactatttattgggaagcaggtgcaaatatgaagggtagacaaattttggaaacagttttggtggtaagtgatgcgattgacgagaaaagagggaaacatactcagctttgcaatacatgtagagccgggaaaacttgttaccaacttttacaggagagaggtgtccagagcgacaagtttgcctttattacatccctttcttatctggcatatgcacctctttatcttgctgggccaattctaagcttcaatgcctttgcttcacagctggatattcctcaaaataactgttcagttagagacactacttggtacggtttgcgttgggtattcagtctccttctgatggcactaatgacacatctcttttactacaatgcctttgcaatcagaaactccagatcaaaagggatttatagctcagttagtagaccagatattccaaacaagtcaatctctttaagctcaacgttggaagtatgggatgcaggtactatatgttacttttctgtctgtgactcggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBOAT

Protein Analysis

367

Amino Acids

40.9

Weight (kDa)

9.05

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	584
Acc36I	ACCTGC	2 cut(s)	584, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	2 cut(s)	613, 1006
AciI	CCGC	3 cut(s)	125, 128, 255
AclI	AACGTT	1 cut(s)	1046
AcsI	RAATTY	2 cut(s)	304, 618
AfaI	GTAC	2 cut(s)	890, 1069
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	4 cut(s)	217, 283, 284, 922
AflIII	ACRYGT	1 cut(s)	692
AgsI	TTSAA	2 cut(s)	550, 826
AjnI	CCWGG	2 cut(s)	249, 366
AluBI	AGCT	8 cut(s)	266, 298, 392, 682, 822, 844, 996, 1041
AluI	AGCT	8 cut(s)	266, 298, 392, 682, 822, 844, 996, 1041
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	3 cut(s)	195, 870, 917
AlwNI	CAGNNNCTG	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	3 cut(s)	183, 252, 809
ApeKI	GCWGC	6 cut(s)	6, 46, 49, 52, 63, 494
ApoI	RAATTY	2 cut(s)	304, 618
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	3 cut(s)	184, 207, 809
AsuC2I	CCSGG	1 cut(s)	703
AsuHPI	GGTGA	2 cut(s)	536, 568
AvaII	GGWCC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	6 cut(s)	18, 58, 61, 64, 75, 506
BccI	CCATC	2 cut(s)	211, 916
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	6 cut(s)	127, 161, 473, 507, 737, 771
BciT130I	CCWGG	2 cut(s)	251, 368
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	3 cut(s)	195, 870, 917
BfaI	CTAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	2 cut(s)	584, 1055
BisI	GCNGC	8 cut(s)	7, 47, 50, 53, 64, 128, 255, 495
BlsI	GCNGC	8 cut(s)	8, 48, 51, 54, 65, 129, 256, 496
Bme1390I	CCNGG	3 cut(s)	251, 368, 703
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	3 cut(s)	184, 207, 809
BmiI	GGNNCC	2 cut(s)	27, 209
BmrFI	CCNGG	3 cut(s)	251, 368, 703
BmsI	GCATC	4 cut(s)	186, 460, 637, 1051
BpmI	CTGGAG	1 cut(s)	958
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	703
BsaJI	CCNNGG	4 cut(s)	158, 418, 465, 514
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 283, 284, 922
BseBI	CCWGG	2 cut(s)	251, 368
BseDI	CCNNGG	4 cut(s)	158, 418, 465, 514
BseGI	GGATG	4 cut(s)	415, 475, 767, 1066
BseLI	CCNNNNNNNGG	4 cut(s)	217, 283, 284, 922
BseMII	CTCAG	3 cut(s)	60, 692, 1011
BseXI	GCAGC	6 cut(s)	18, 58, 61, 64, 75, 506
BseYI	CCCAGC	1 cut(s)	806
BshFI	GGCC	3 cut(s)	185, 254, 811
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	4 cut(s)	217, 283, 284, 922
BsmAI	GTCTC	3 cut(s)	195, 870, 917
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	185, 254, 811
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	977
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	3 cut(s)	125, 128, 255
BspANI	GGCC	3 cut(s)	185, 254, 811
BspCNI	CTCAG	3 cut(s)	61, 691, 1010
BspLI	GGNNCC	2 cut(s)	27, 209
BspMI	ACCTGC	2 cut(s)	584, 1055
BspQI	GCTCTTC	1 cut(s)	169
BssECI	CCNNGG	4 cut(s)	158, 418, 465, 514
BssMI	GATC	1 cut(s)	977
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	4 cut(s)	158, 418, 465, 514
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	251, 368
Bst4CI	ACNGT	4 cut(s)	567, 631, 866, 893
Bst6I	CTCTTC	1 cut(s)	169
BstDEI	CTNAG	4 cut(s)	69, 678, 818, 997
BstDSI	CCRYGG	1 cut(s)	514
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	4 cut(s)	415, 475, 767, 1066
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	980
BstMAI	GTCTC	3 cut(s)	195, 870, 917
BstMBI	GATC	1 cut(s)	977
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 124, 263, 470
BstNI	CCWGG	2 cut(s)	251, 368
BstNSI	RCATGY	3 cut(s)	118, 249, 696
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	3 cut(s)	249, 366, 701
BstV1I	GCAGC	6 cut(s)	18, 58, 61, 64, 75, 506
BstXI	CCANNNNNNTGG	1 cut(s)	521
BsuRI	GGCC	3 cut(s)	185, 254, 811
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	4 cut(s)	415, 475, 767, 1066
BtsI	GCAGTG	2 cut(s)	143, 526
BtsIMutI	CAGTG	2 cut(s)	143, 526
BveI	ACCTGC	2 cut(s)	584, 1055
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	3 cut(s)	184, 207, 809
Csp6I	GTAC	2 cut(s)	889, 1068
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	5 cut(s)	115, 246, 283, 515, 693
CviQI	GTAC	2 cut(s)	889, 1068
DdeI	CTNAG	4 cut(s)	69, 678, 818, 997
DpnI	GATC	1 cut(s)	979
DpnII	GATC	1 cut(s)	977
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	4 cut(s)	158, 418, 465, 514
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	76
EcoO109I	RGGNCCY	2 cut(s)	184, 207
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	249, 366
EcoT14I	CCWWGG	4 cut(s)	158, 418, 465, 514
ErhI	CCWWGG	4 cut(s)	158, 418, 465, 514
FaeI	CATG	5 cut(s)	118, 249, 286, 518, 696
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	5 cut(s)	114, 245, 282, 514, 692
FauNDI	CATATG	1 cut(s)	787
FblI	GTMKAC	2 cut(s)	613, 1006
Fnu4HI	GCNGC	8 cut(s)	7, 47, 50, 53, 64, 128, 255, 495
FokI	GGATG	4 cut(s)	422, 482, 754, 1073
Fsp4HI	GCNGC	8 cut(s)	7, 47, 50, 53, 64, 128, 255, 495
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	8 cut(s)	7, 47, 50, 53, 64, 128, 255, 495
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	1 cut(s)	958
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	185, 254, 811
HapII	CCGG	1 cut(s)	702
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	118, 249, 286, 518, 696
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	296, 820
HinfI	GANTC	6 cut(s)	92, 139, 240, 322, 375, 1094
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	2 cut(s)	536, 568
Hpy166II	GTNNAC	2 cut(s)	614, 1007
Hpy188I	TCNGA	6 cut(s)	25, 108, 195, 409, 921, 968
Hpy188III	TCNNGA	5 cut(s)	32, 89, 395, 742, 975
Hpy8I	GTNNAC	2 cut(s)	614, 1007
HpyAV	CCTTC	3 cut(s)	544, 601, 926
HpyCH4III	ACNGT	4 cut(s)	567, 631, 866, 893
HpyCH4IV	ACGT	1 cut(s)	1046
HpyCH4V	TGCA	6 cut(s)	494, 599, 687, 791, 962, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 124, 263, 470
HpyF3I	CTNAG	4 cut(s)	69, 678, 818, 997
HpySE526I	ACGT	1 cut(s)	1046
Hsp92II	CATG	5 cut(s)	118, 249, 286, 518, 696
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	977
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	3 cut(s)	25, 123, 366
Lsp1109I	GCAGC	6 cut(s)	18, 58, 61, 64, 75, 506
LweI	GCATC	4 cut(s)	186, 460, 637, 1051
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	1046
MaeIII	GTNAC	6 cut(s)	56, 76, 524, 713, 1076, 1091
MalI	GATC	1 cut(s)	979
MboI	GATC	1 cut(s)	977
MboII	GAAGA	2 cut(s)	87, 186
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	8 cut(s)	84, 150, 258, 304, 380, 489, 618, 813
MlyI	GAGTC	1 cut(s)	1088
MmeI	TCCRAC	2 cut(s)	424, 1029
MseI	TTAA	2 cut(s)	507, 1037
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	266, 844
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	3 cut(s)	251, 368, 703
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	251, 368
MwoI	GCNNNNNNNGC	4 cut(s)	52, 124, 263, 470
NciI	CCSGG	1 cut(s)	703
NcoI	CCATGG	1 cut(s)	514
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	1 cut(s)	977
NlaIII	CATG	5 cut(s)	118, 249, 286, 518, 696
NlaIV	GGNNCC	2 cut(s)	27, 209
NmuCI	GTSAC	3 cut(s)	56, 524, 1091
NspI	RCATGY	3 cut(s)	118, 249, 696
PaqCI	CACCTGC	1 cut(s)	584
PciI	ACATGT	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	169
PfeI	GAWTC	5 cut(s)	92, 139, 240, 322, 375
PflFI	GACNNNGTC	1 cut(s)	1097
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	8 cut(s)	8, 48, 51, 54, 65, 129, 256, 496
PleI	GAGTC	1 cut(s)	1088
PpsI	GAGTC	1 cut(s)	1088
PpuMI	RGGWCCY	1 cut(s)	207
PscI	ACATGT	1 cut(s)	692
Psp1406I	AACGTT	1 cut(s)	1046
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	249, 366
PspEI	GGTNACC	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	2 cut(s)	249, 366
PspN4I	GGNNCC	2 cut(s)	27, 209
PspPI	GGNCC	3 cut(s)	184, 207, 809
PspPPI	RGGWCCY	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	1097
PvuII	CAGCTG	2 cut(s)	266, 844
RsaI	GTAC	2 cut(s)	890, 1069
RsaNI	GTAC	2 cut(s)	889, 1068
RseI	CAYNNNNRTG	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	507, 1037
SatI	GCNGC	8 cut(s)	7, 47, 50, 53, 64, 128, 255, 495
Sau3AI	GATC	1 cut(s)	977
Sau96I	GGNCC	3 cut(s)	184, 207, 809
SchI	GAGTC	1 cut(s)	1088
ScrFI	CCNGG	3 cut(s)	251, 368, 703
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	4 cut(s)	186, 460, 637, 1051
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	8 cut(s)	84, 150, 258, 304, 380, 489, 618, 813
SsiI	CCGC	3 cut(s)	125, 128, 255
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	249, 366, 701
StyI	CCWWGG	4 cut(s)	158, 418, 465, 514
TaaI	ACNGT	4 cut(s)	567, 631, 866, 893
TaiI	ACGT	1 cut(s)	1049
TaqII	GACCGA	1 cut(s)	1087
TasI	AATT	8 cut(s)	84, 150, 258, 304, 380, 489, 618, 813
TauI	GCSGC	2 cut(s)	130, 257
TfiI	GAWTC	5 cut(s)	92, 139, 240, 322, 375
Tru1I	TTAA	2 cut(s)	507, 1037
Tru9I	TTAA	2 cut(s)	507, 1037
TscAI	CASTG	2 cut(s)	150, 526
TseFI	GTSAC	3 cut(s)	56, 524, 1091
TseI	GCWGC	6 cut(s)	6, 46, 49, 52, 63, 494
Tsp45I	GTSAC	3 cut(s)	56, 524, 1091
TspDTI	ATGAA	2 cut(s)	317, 620
TspRI	CASTG	2 cut(s)	150, 526
Tth111I	GACNNNGTC	1 cut(s)	1097
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	304, 618
XceI	RCATGY	3 cut(s)	118, 249, 696
XmiI	GTMKAC	2 cut(s)	613, 1006
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.