Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Forward (+)

78587699 .. 78589081

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG554800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTGCCTCTACTCTATCTTCTGCTACCACTTCACAGGGTGATCCTACCTACCTTGTTGTGGAGAAAGACAGAACTCTTGCCACATATGGAATCAATGCTGTATGCACTCACCTTGGTTGTGTCGTGCCATTCAACACCGCCGAGAACAAGTTCATCTGCCCATGCCATGGATCCCAGTACAATGACCAAGGAAGGGTTGTCAGGGGACCTGCACCTCTGTCTCTGGCTTTGGCTCATGCTGATATTGATGAAGGCAAGGTAATATTTGTTCCTTGGGTCGAAACCGATTTCAGAACCGGTGAGGATCCATGGTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009055 GO:0009314 GO:0009416 GO:0009507 GO:0009512 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009767 GO:0009941 GO:0009987 GO:0010196 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046028 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0070069 GO:0071944 GO:0080167 GO:0098542 GO:1990066

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

107

Amino Acids

11.6

Weight (kDa)

4.9

Isoelectric Point (pI)

22.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rieske	PF00355	18 - 75	1.1e-10	Rieske [2Fe-2S] domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	5 cut(s)	38, 168, 181, 302, 315
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	61, 170, 196
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	5 cut(s)	38, 168, 181, 302, 315
ApeKI	GCWGC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	53, 104, 314
AvaII	GGWCC	1 cut(s)	209
BamHI	GGATCC	2 cut(s)	173, 307
BcoDI	GTCTC	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	175, 210, 309
BmrI	ACTGGG	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	172
BsaJI	CCNNGG	5 cut(s)	115, 169, 190, 275, 311
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 170, 196
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	178
BseDI	CCNNGG	5 cut(s)	115, 169, 190, 275, 311
BseLI	CCNNNNNNNGG	3 cut(s)	61, 170, 196
BseNI	ACTGG	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	3 cut(s)	61, 170, 196
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	43, 173, 307
Bsp19I	CCATGG	2 cut(s)	169, 311
BspACI	CCGC	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	175, 210, 309
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	5 cut(s)	38, 168, 181, 302, 315
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	115, 169, 190, 275, 311
BssMI	GATC	3 cut(s)	43, 173, 307
BssT1I	CCWWGG	5 cut(s)	115, 169, 190, 275, 311
BstDSI	CCRYGG	2 cut(s)	169, 311
BstKTI	GATC	3 cut(s)	46, 176, 310
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	3 cut(s)	43, 173, 307
BstX2I	RGATCY	2 cut(s)	173, 307
BstYI	RGATCY	2 cut(s)	173, 307
BtgI	CCRYGG	2 cut(s)	169, 311
BveI	ACCTGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	181
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	4 cut(s)	165, 170, 239, 312
CviJI	RGCY	4 cut(s)	5, 230, 236, 320
CviKI_1	RGCY	4 cut(s)	5, 230, 236, 320
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	3 cut(s)	45, 175, 309
DpnII	GATC	3 cut(s)	43, 173, 307
DraIII	CACNNNGTG	1 cut(s)	41
Eco130I	CCWWGG	5 cut(s)	115, 169, 190, 275, 311
Eco47I	GGWCC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT14I	CCWWGG	5 cut(s)	115, 169, 190, 275, 311
ErhI	CCWWGG	5 cut(s)	115, 169, 190, 275, 311
FaeI	CATG	4 cut(s)	168, 173, 242, 315
FaiI	YATR	7 cut(s)	88, 90, 106, 166, 171, 240, 313
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	4 cut(s)	164, 169, 238, 311
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	4 cut(s)	168, 173, 242, 315
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	3 cut(s)	53, 104, 314
Hpy188I	TCNGA	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	189, 248
HpyCH4V	TGCA	2 cut(s)	108, 215
Hsp92II	CATG	4 cut(s)	168, 173, 242, 315
Kzo9I	GATC	3 cut(s)	43, 173, 307
LpnPI	CCDG	6 cut(s)	23, 190, 191, 212, 225, 313
MalI	GATC	3 cut(s)	45, 175, 309
MboI	GATC	3 cut(s)	43, 173, 307
MboII	GAAGA	1 cut(s)	12
MflI	RGATCY	2 cut(s)	173, 307
MnlI	CCTC	3 cut(s)	19, 228, 298
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	322
MspI	CCGG	1 cut(s)	300
NcoI	CCATGG	2 cut(s)	169, 311
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	3 cut(s)	43, 173, 307
NlaIII	CATG	4 cut(s)	168, 173, 242, 315
NlaIV	GGNNCC	3 cut(s)	175, 210, 309
NmeAIII	GCCGAG	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	93
PflMI	CCANNNNNTGG	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	175, 210, 309
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
PsrI	GAACNNNNNNTAC	2 cut(s)	255, 287
PsuI	RGATCY	2 cut(s)	173, 307
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	43, 173, 307
Sau96I	GGNCC	1 cut(s)	209
SetI	ASST	6 cut(s)	53, 57, 117, 214, 220, 264
SinI	GGWCC	1 cut(s)	209
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	267
StyI	CCWWGG	5 cut(s)	115, 169, 190, 275, 311
TaqI	TCGA	1 cut(s)	282
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	145, 267
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.