Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

52603813 .. 52610244

Gene Structure 6432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGCAACAACACGGAGAGTTCCGAGCCTCCTGACCTTGAGAGGCAGCAGCAGCGTGACGGCGGCGCTGAGGTGGTTACCTCAATTCCAGATTCTTCTGGCTTTCAGAACCACAGGCTCCCTCCGCCGCATCCACTGCTAATTCGTTCAAGGAGGCATAATAGAAGAGAGGAAGCTTATGAATCTGCTTCTTCTAATGAATCTCACTTCCCTCTGGTTTCCTATGCCACTTTCTTTGCTCCACCTGGCTCTGGTGTTGGAAGTGGTGGTCAAGTTGCCAAGGATGCTCTAGGAAACGATGTAATTGCAGCAAAATGGATTAAGAACCATGGCCGTGGTGATAGGACTTTCACACAAAGATTGAAGCAGTCTAAAGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

127

Amino Acids

13.95

Weight (kDa)

9.22

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 125, 128
AcoI	YGGCCR	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	150, 364
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	46, 49, 52, 308
AspLEI	GCGC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	350
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	58, 61, 64, 320
BceAI	ACGGC	2 cut(s)	76, 318
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	6 cut(s)	47, 50, 53, 64, 128, 309
BlsI	GCNGC	6 cut(s)	48, 51, 54, 65, 129, 310
Bme1390I	CCNGG	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	139, 274
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	279, 328, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	279, 328, 334
BseGI	GGATG	2 cut(s)	130, 289
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	58, 61, 64, 320
BshFI	GGCC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	251
BsnI	GGCC	1 cut(s)	333
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	3 cut(s)	63, 125, 128
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	279, 328, 334
BssT1I	CCWWGG	2 cut(s)	279, 328
Bst2UI	CCWGG	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	2 cut(s)	328, 334
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	130, 289
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 124, 136, 284
BstNI	CCWGG	1 cut(s)	246
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	58, 61, 64, 320
BstXI	CCANNNNNNTGG	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	2 cut(s)	328, 334
BtsCI	GGATG	2 cut(s)	130, 289
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	6 cut(s)	28, 102, 118, 176, 249, 333
CviKI_1	RGCY	6 cut(s)	28, 102, 118, 176, 249, 333
DdeI	CTNAG	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	279, 328
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	279, 328
ErhI	CCWWGG	2 cut(s)	279, 328
FaeI	CATG	1 cut(s)	332
FaiI	YATR	4 cut(s)	159, 180, 225, 330
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	6 cut(s)	47, 50, 53, 64, 128, 309
FokI	GGATG	2 cut(s)	117, 296
Fsp4HI	GCNGC	6 cut(s)	47, 50, 53, 64, 128, 309
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	6 cut(s)	47, 50, 53, 64, 128, 309
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	3 cut(s)	92, 182, 200
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	25, 108
Hpy188III	TCNNGA	2 cut(s)	32, 89
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 124, 136, 284
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	123, 244
LpnPI	CCDG	8 cut(s)	45, 84, 100, 102, 200, 231, 237, 258
Lsp1109I	GCAGC	4 cut(s)	58, 61, 64, 320
LweI	GCATC	2 cut(s)	139, 274
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	3 cut(s)	56, 76, 376
MboII	GAAGA	3 cut(s)	87, 177, 183
MluCI	AATT	3 cut(s)	84, 141, 303
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	8 cut(s)	36, 39, 64, 91, 132, 147, 163, 222
MseI	TTAA	2 cut(s)	321, 382
MslI	CAYNNNNRTG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	52, 124, 136, 284
NcoI	CCATGG	1 cut(s)	328
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	92, 182, 200
PkrI	GCNGC	6 cut(s)	48, 51, 54, 65, 129, 310
Psp6I	CCWGG	1 cut(s)	244
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	321, 382
SatI	GCNGC	6 cut(s)	47, 50, 53, 64, 128, 309
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	5 cut(s)	39, 75, 83, 178, 247
SfaNI	GCATC	2 cut(s)	139, 274
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	84, 141, 303
SsiI	CCGC	3 cut(s)	63, 125, 128
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	279, 328
TasI	AATT	3 cut(s)	84, 141, 303
TauI	GCSGC	2 cut(s)	66, 130
TfiI	GAWTC	3 cut(s)	92, 182, 200
Tru1I	TTAA	2 cut(s)	321, 382
Tru9I	TTAA	2 cut(s)	321, 382
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	4 cut(s)	46, 49, 52, 308
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	195, 213
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	141
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.