Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8428437.1

Orthogroup ID

OG0003668

Physical Location & Seq

Genomic Coordinates Reverse (-)

114 .. 1343

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8428437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgttctcttcagcacaggccctgtctgtgatgcccaggaggacccagatgatgggaaagggaaagggaatgagaatcacatgccaggcagcaattccagctgataatgtccctgacatgggtaagaggaagcttatgaatttgcttcttctgggtgctatctcacttccctctggtttcatgctggttccctatgctactttctttgctccacctggctctggtgctggaagtggtggtcaagttgccaaggatgctctcggaaacgatgtaattgcatcagaatggcttaagacccatggccctggtgacaagactctcacacaaggattgaagggtgatcctacctaccttgttgtggagaaagacagaactcttgccacatatggaatcaatgctgtatgcactcaccttggttgtgtcgtgccattcaacaccgccgagaacaagttcatctgcccatgccatggatcccagtacaatgaccaaggaagggttgtcaggggacctgcacctttgtctctggctttggctcatgctgatattgatgaaggcaaggtaatatttgttccttgggtcgaaaccgatttcagaaccggtgaggatccatggtgggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

CytB6-F_Fe-S Rieske

Protein Analysis

206

Amino Acids

22.02

Weight (kDa)

7.64

Isoelectric Point (pI)

21.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03280 AT4G03280
fragaria_vesca	FvH4_6g44370
malus_domestica	MD09G1098300.v1.1 MD10G1189200.v1.1 MD17G1086300.v1.1
prunus_persica	Prupe.3G228100_v2.0.a1
pyrus_communis	pycom09g02210 pycom17g08380
rosa_chinensis	RchiOBHm_Chr1g0330511 RchiOBHm_Chr2g0161301
rosa_laevigata	RLG00000009014 RLG00000021278
rosa_multiflora	Rmu_co8428437.1_g000001 Rmu_co8434711.1_g000001 Rmu_sc0001836.1_g000071 Rmu_sc0002763.1_g000003 Rmu_sc0006558.1_g000002 Rmu_ssc0000196.1_g000004
rosa_roxburghii	Rroxscaffold_1G00030230 Rroxscaffold_2G00088910 Rroxscaffold_4G00301090
rosa_rugosa	Rorug02G0488200 Rorug03G0333700
rosa_samantha	Rh2AG554800 Rh2BG568000 Rh2CG538500 Rh2DG326600 Rh2DG577500 Rh4AG225400 Rh5AG266600 Rh6BG115100 Rh6DG102900 Rh7AG084200
rosa_wichuraiana	Rw2G045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	517
AccB7I	CCANNNNNTGG	2 cut(s)	52, 467
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	5 cut(s)	335, 465, 478, 599, 612
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	7 cut(s)	52, 118, 119, 221, 358, 467, 493
AflII	CTTAAG	1 cut(s)	290
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	334, 433
AjnI	CCWGG	4 cut(s)	35, 84, 214, 304
AluBI	AGCT	2 cut(s)	101, 133
AluI	AGCT	2 cut(s)	101, 133
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	5 cut(s)	335, 465, 478, 599, 612
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	18, 301
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	139
AsiGI	ACCGGT	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	4 cut(s)	19, 42, 302, 506
AsuHPI	GGTGA	4 cut(s)	320, 350, 401, 611
AvaII	GGWCC	2 cut(s)	42, 506
BamHI	GGATCC	2 cut(s)	470, 604
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	4 cut(s)	37, 86, 216, 306
BcoDI	GTCTC	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	4 cut(s)	37, 86, 216, 306
Bme18I	GGWCC	2 cut(s)	42, 506
BmgT120I	GGNCC	4 cut(s)	19, 42, 302, 506
BmiI	GGNNCC	5 cut(s)	44, 189, 472, 507, 606
BmrFI	CCNGG	4 cut(s)	37, 86, 216, 306
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	3 cut(s)	21, 244, 287
BmuI	ACTGGG	1 cut(s)	469
BsaJI	CCNNGG	9 cut(s)	35, 249, 298, 304, 412, 466, 487, 572, 608
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	7 cut(s)	52, 118, 119, 221, 358, 467, 493
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	4 cut(s)	37, 86, 216, 306
BseDI	CCNNGG	9 cut(s)	35, 249, 298, 304, 412, 466, 487, 572, 608
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	7 cut(s)	52, 118, 119, 221, 358, 467, 493
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	2 cut(s)	20, 303
BshTI	ACCGGT	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	95, 519
BslI	CCNNNNNNNGG	7 cut(s)	52, 118, 119, 221, 358, 467, 493
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	95, 519
BsnI	GGCC	2 cut(s)	20, 303
Bsp143I	GATC	3 cut(s)	340, 470, 604
Bsp19I	CCATGG	3 cut(s)	298, 466, 608
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	2 cut(s)	20, 303
BspLI	GGNNCC	5 cut(s)	44, 189, 472, 507, 606
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	5 cut(s)	335, 465, 478, 599, 612
BspTI	CTTAAG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	9 cut(s)	35, 249, 298, 304, 412, 466, 487, 572, 608
BssMI	GATC	3 cut(s)	340, 470, 604
BssT1I	CCWWGG	7 cut(s)	249, 298, 412, 466, 487, 572, 608
Bst2UI	CCWGG	4 cut(s)	37, 86, 216, 306
Bst6I	CTCTTC	1 cut(s)	13
BstAFI	CTTAAG	1 cut(s)	290
BstDSI	CCRYGG	3 cut(s)	298, 466, 608
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	343, 473, 607
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	3 cut(s)	340, 470, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 254
BstNI	CCWGG	4 cut(s)	37, 86, 216, 306
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	4 cut(s)	35, 84, 214, 304
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	2 cut(s)	470, 604
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	2 cut(s)	470, 604
BsuRI	GGCC	2 cut(s)	20, 303
BtgI	CCRYGG	3 cut(s)	298, 466, 608
BtsCI	GGATG	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	517
CaiI	CAGNNNCTG	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	4 cut(s)	19, 42, 302, 506
Csp6I	GTAC	1 cut(s)	478
CspAI	ACCGGT	1 cut(s)	596
CviAII	CATG	8 cut(s)	81, 118, 181, 299, 462, 467, 536, 609
CviJI	RGCY	9 cut(s)	20, 101, 133, 219, 289, 303, 527, 533, 617
CviKI_1	RGCY	9 cut(s)	20, 101, 133, 219, 289, 303, 527, 533, 617
CviQI	GTAC	1 cut(s)	478
DpnI	GATC	3 cut(s)	342, 472, 606
DpnII	GATC	3 cut(s)	340, 470, 604
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	7 cut(s)	249, 298, 412, 466, 487, 572, 608
Eco47I	GGWCC	2 cut(s)	42, 506
EcoO109I	RGGNCCY	3 cut(s)	19, 42, 506
EcoRII	CCWGG	4 cut(s)	35, 84, 214, 304
EcoT14I	CCWWGG	7 cut(s)	249, 298, 412, 466, 487, 572, 608
ErhI	CCWWGG	7 cut(s)	249, 298, 412, 466, 487, 572, 608
FaeI	CATG	8 cut(s)	84, 121, 184, 302, 465, 470, 539, 612
FaqI	GGGAC	2 cut(s)	95, 519
FatI	CATG	8 cut(s)	80, 117, 180, 298, 461, 466, 535, 608
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	20, 303
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	8 cut(s)	84, 121, 184, 302, 465, 470, 539, 612
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	75, 316, 390
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	4 cut(s)	320, 350, 401, 611
Hpy188I	TCNGA	3 cut(s)	263, 283, 593
HpyAV	CCTTC	3 cut(s)	328, 486, 545
HpyCH4V	TGCA	3 cut(s)	278, 405, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 254
Hsp92II	CATG	8 cut(s)	84, 121, 184, 302, 465, 470, 539, 612
Kzo9I	GATC	3 cut(s)	340, 470, 604
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	3 cut(s)	21, 244, 287
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	3 cut(s)	342, 472, 606
MboI	GATC	3 cut(s)	340, 470, 604
MboII	GAAGA	1 cut(s)	140
MflI	RGATCY	2 cut(s)	470, 604
MluCI	AATT	3 cut(s)	93, 139, 273
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	4 cut(s)	33, 120, 181, 595
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	291, 619
MslI	CAYNNNNRTG	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	4 cut(s)	37, 86, 216, 306
MvaI	CCWGG	4 cut(s)	37, 86, 216, 306
MwoI	GCNNNNNNNGC	2 cut(s)	98, 254
NcoI	CCATGG	3 cut(s)	298, 466, 608
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	3 cut(s)	340, 470, 604
NlaIII	CATG	8 cut(s)	84, 121, 184, 302, 465, 470, 539, 612
NlaIV	GGNNCC	5 cut(s)	44, 189, 472, 507, 606
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	75, 390
PflMI	CCANNNNNTGG	2 cut(s)	52, 467
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PpuMI	RGGWCCY	2 cut(s)	42, 506
Psp5II	RGGWCCY	2 cut(s)	42, 506
Psp6I	CCWGG	4 cut(s)	35, 84, 214, 304
PspGI	CCWGG	4 cut(s)	35, 84, 214, 304
PspN4I	GGNNCC	5 cut(s)	44, 189, 472, 507, 606
PspPI	GGNCC	4 cut(s)	19, 42, 302, 506
PspPPI	RGGWCCY	2 cut(s)	42, 506
PsrI	GAACNNNNNNTAC	2 cut(s)	552, 584
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	470, 604
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	291, 619
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	340, 470, 604
Sau96I	GGNCC	4 cut(s)	19, 42, 302, 506
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	4 cut(s)	37, 86, 216, 306
SetI	ASST	9 cut(s)	103, 135, 217, 350, 354, 414, 511, 517, 561
SfaNI	GCATC	3 cut(s)	21, 244, 287
SinI	GGWCC	2 cut(s)	42, 506
SmiMI	CAYNNNNRTG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	93, 139, 273
SsiI	CCGC	1 cut(s)	438
SspI	AATATT	1 cut(s)	564
StyD4I	CCNGG	4 cut(s)	35, 84, 214, 304
StyI	CCWWGG	7 cut(s)	249, 298, 412, 466, 487, 572, 608
TaqI	TCGA	1 cut(s)	579
TasI	AATT	3 cut(s)	93, 139, 273
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	75, 390
Tru1I	TTAA	2 cut(s)	291, 619
Tru9I	TTAA	2 cut(s)	291, 619
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	152, 169, 442, 564
Van91I	CCANNNNNTGG	2 cut(s)	52, 467
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	42, 506
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.